Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11431
Subject:
XM_006496875.1
Aligned Length:
3180
Identities:
1578
Gaps:
1392

Alignment

Query    1  ATGGAGGTCAGAGCTTCATTACA---------------------------------------------------  23
            |||||||||||||||||.||.||                                                   
Sbjct    1  ATGGAGGTCAGAGCTTCGTTCCAGAAGGTTAGTGGGTCATCTGATTCTGTGGCCACACTGAACAGTGAAGAATT  74

Query   24  ------------------------------------------------------------GAAGATAGTTTCTA  37
                                                                        ||||||||.|||.|
Sbjct   75  TGTTTTGGTTTCTCAGCACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAGATAGCTTCCA  148

Query   38  ATGGTGATGAACAATTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTT  111
            ||||||||||.||.||||||||||||||||||||||||||||||||||||||||||.|.|.||||.||||.|.|
Sbjct  149  ATGGTGATGAGCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCT  222

Query  112  GTTGATTGTCAGAGTTCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCC  185
            ||||||||.||..|.||||||||||||||||||..|.|.|||||||||.|.||.|||||||||||||.||||||
Sbjct  223  GTTGATTGCCAAGGATCCAGTGAGATTTCAGACTGTCCCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCC  296

Query  186  ATCTCTTCAGTTAATTTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTAC  259
            ..||||.|||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||.|..||.|.|
Sbjct  297  GCCTCTCCAGTTAATTTTGGATCCATCTAATACAGAAATTTCCACACCCAGACCATCTTCTCCAAGCAGATTTC  370

Query  260  CTGAAGAAGATAGTGTTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAA  333
            ||||||||||.||||||.|.|||||.||.|||||.||||||||||||||||||||||||||||||||.|.||||
Sbjct  371  CTGAAGAAGACAGTGTTCTCTTTAACAAGCTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGCAGTGAA  444

Query  334  GTAGAGGCTTTACGGGCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACC  407
            ||.||||||||||||||.|||||.|||||||.|.||||||||||.|||||||||.|||||||.||||||||.||
Sbjct  445  GTGGAGGCTTTACGGGCCATGGCCACCATGAGAGCTTCCAGTCAGTACCCCTTTGCTGTTACTCTGTATGTGCC  518

Query  408  AAATGTTCCAGAAGGTTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATA  481
            .||||||||||||||.|||||||||||.||||||||.||.|||||||||||||||||||||||||||||.||||
Sbjct  519  CAATGTTCCAGAAGGATCTGTGAGAATCATAGACCAGTCAAGCAATGTGGAGATAGCATCTTTTCCAATTTATA  592

Query  482  AGGTGTTATTCTGTGCACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCAT  555
            |.|||.|.||||||||||||||.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||
Sbjct  593  AAGTGCTTTTCTGTGCACGTGGGCATGATGGGACAGCCGAGAGCAATTGCTTTGCATTTACAGAGAGTTCTCAT  666

Query  556  GGTTCGGAAGAATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTT  629
            ||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||
Sbjct  667  GGCTCAGAAGAATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTATATAGTTT  740

Query  630  CTGTACAGCATTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTG  703
            |||.||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||||||||||
Sbjct  741  CTGCACTGCATTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTCATCCCGACTCCCGACAGTG  814

Query  704  ATGTGTTTACCTTCAGTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAG  777
            |||||||||||||||||||.|||||||||||.||||||||.||||||||||||||||||||.||.|||||||||
Sbjct  815  ATGTGTTTACCTTCAGTGTTTCCTTGGAGGTCAAAGAAGATGATGGAAAAGGAAACTTTAGTCCCGTGCCTAAG  888

Query  778  GATAGAGATAAATTTTATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTC  851
            ||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct  889  GATAGAGATAAATTTTATTTCAAAATAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTTCAGCAACTGTC  962

Query  852  TAACAAAGAATTAGCTATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACA  925
            |||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TAACAAAGAATTAGCTATTGAGAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACA  1036

Query  926  TGCATTTACTGGATATGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAAC  999
            |||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||.||||||||||||
Sbjct 1037  TGCATTTACTGGATATGGAGTCCATGGGAAAGAGCTATGATGGGAGAGCTTACGTCATCACGGGCATGTGGAAC  1110

Query 1000  CCCAATGCACCAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGT  1073
            |||||.||||||.||||||||||.|||||.||.|||||.||.||||||||.|..||.||||||||.||.|||||
Sbjct 1111  CCCAACGCACCAATATTTCTGGCTCTTAATGAAGAAACGCCCAAAGATAAACGGGTGTACATGACCGTTGCAGT  1184

Query 1074  GGATATGGTAGTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAA  1147
            |||.|||||.||||||||||||||||||||.||.||.||||||||||||||||||||.|||||.||||||||||
Sbjct 1185  GGACATGGTGGTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAA  1258

Query 1148  ATGAGCGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGA  1221
            |||||.|||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||
Sbjct 1259  ATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAGTCTGAGGGA  1332

Query 1222  AAAGGCCATACCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACC  1295
            ||||||||.|.||.|||||||||||||||||||||.|||||||||||.|||.||||.||||||||||||||.||
Sbjct 1333  AAAGGCCACAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCC  1406

Query 1296  AGTCACTCCTACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAAC  1369
            ..||||.||||||||||..|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||
Sbjct 1407  CATCACCCCTACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGGAGAGTGATAATGAAC  1480

Query 1370  TCTCAAGTGGAACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGA  1443
            ||||.||||||||||||||||||||.||.||.||||||||||||||.||.||||||||||||||.|||.|||||
Sbjct 1481  TCTCGAGTGGAACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATTCTCTATTCTTGGGGAGAATTGTTAGGA  1554

Query 1444  AAATGGCACAGTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATT  1517
            |.||||||||.|||||||||||..|||||.|||||.||.|..||..||||.|||||||||||.|||||.|||.|
Sbjct 1555  AGATGGCACAATAACCTTGGTGGCCGACCAAAAGGACTATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACT  1628

Query 1518  GAGGGCAGAGGTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTA  1591
            .||||||||.||||||||..||||.|||||.|||||||||||.||||.|||||||||||.|||||||||.||||
Sbjct 1629  AAGGGCAGAAGTATGGCAACTATTAGCAGGATGCCATGACAATCAGGAAATGCTGGATAAATACCGAATCCTTA  1702

Query 1592  TCACAAAGCA------ACAGATGAAATTTAGTCTTACACCGAGACAGACTATTCACC-----------------  1642
            ||||||||.|      ||||..||...|||   |||| .|||||     ||||||.|                 
Sbjct 1703  TCACAAAGGACTCTGCACAGGAGAGTGTTA---TTAC-TCGAGA-----TATTCATCGTACATTTCCTGCACAC  1767

Query 1643  ---TAGTT-AAATA---TGAAGGGTCTATGAAGGTCTCCATGACACCCTGTA-ACCAGCTGCAATTTGACATTA  1708
               ||.|| |||.|   ||.|||     .||.|||   ||.||..||||.|| |..|.||||||   |.|.|  
Sbjct 1768  GATTACTTCAAAGACACTGGAGG-----CGATGGT---CAAGAATCCCTTTACAAAATCTGCAA---GGCCT--  1828

Query 1709  GACTTGATGTTC--TGATTACTT---ATACT-------------TTTTGTTTTAGTTCCTTTCCT---------  1755
             |||.|.|||||  |||..||.|   .||||             ||||.||   |.|.||.|.||         
Sbjct 1829  -ACTCGGTGTTCGATGAAGACATTGGGTACTGTCAAGGACAGTCTTTTCTT---GCTGCTGTACTACTGTTGCA  1898

Query 1756  ----------GAGCCTGAATTGT-----------ACAAATATGT------------------CCTAAAACACCA  1790
                      ||||..|.|||.|           ||.|.|||||                  .||.|.|||..|
Sbjct 1899  TATGCCAGAGGAGCAAGCATTCTGTGTTTTGGTGACTATTATGTATGGTTATAAATTGAGAGACTTATACAGAA  1972

Query 1791  AC--TTATTAAGAGGCTT-AATGC-----CTGT-----------------------------------------  1815
            ||  ||.|.|||| .||| |.|||     ||.|                                         
Sbjct 1973  ACAATTTTGAAGA-TCTTCATTGCAAATTCTATCAACTTGAGAAACTAATGCAGGAACAGCTGCCAGACCTGTA  2045

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2046  CAGCCACTTCTGTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTCCTCACTCTCTTTACTGCCA  2119

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2120  AGTTTCCACTCTGCATGGTGTTCCACATCATTGACCTTCTGCTGTGTGAGGGTTTGAATATAATCTTTCATGTA  2193

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2194  GCTTTGGCTCTTCTAAAGACCTCAAAGGAAGACCTCCTTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAG  2267

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2268  AGTTCAGCTTCCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAACAGGCTTGCAATATTAAAG  2341

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2342  TACCAACCAAAAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGAC  2415

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2416  CCAATGGATAGATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAAAATGATGA  2489

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2490  CCTTGCCCATGAACTAGTGACAAGCAAAATTGCTCTGCGGAATGACTTGGATCAGGCAGAAGACAAGGCTGATG  2563

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2564  TGCTGAATAAGGAGCTCCTCTTTACCAAGCAGAGGTTGGTGGAGACTGAGGAAGAGAAGAGGAAGCAAGAGGAG  2637

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2638  GAGACCGCCCAGCTAAAAGAAGTCTTCAGGAAACAGTTAGAAAAGGCAGAATATGAGATAAAGAAGACAACAGC  2711

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2712  TATCATTGCTGAGTATAAACAGATATGTTCTCAATTAAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGG  2785

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2786  AGGAGCTAGAAGCAGTAAAGGGTAAGATGATGGCATGCAAACACTGCAGTGATATCTTCAGCAAGGAAGGAGCT  2859

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2860  TTAAAGCCAGTGGCCGTAAATAGAGAGGACCAGGGACTTGAAGCAGATGATGAAAAGGACTCACTTAAGAAGCA  2933

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2934  GCTGAGGGAGATGGAACTGGAACTGGCACAGACCAAACTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAGGAAC  3007

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 3008  TTGAGCATCAGAGAGGAGCGCTTATGAATGAAATACAAGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAAC  3081

Query 1816  ------------------------------------------------------------------------  1815
                                                                                    
Sbjct 3082  TCTATCAAAACAGCCACAGGCACTCAGCCACTACAGCCGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACA  3153

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