Construct: ORF ccsbBroadEn_11431
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017768.1_s300c1, BRDN0000389879
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RABGAP1L (9910)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001366445.1 | 99.8% | 100% | 123A>G;1191T>C |
| 2 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001366447.1 | 73% | 66.7% | (many diffs) |
| 3 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_014857.4 | 69.7% | 63.8% | (many diffs) |
| 4 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001366448.1 | 57.9% | 53.2% | (many diffs) |
| 5 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XM_005245681.2 | 56.2% | 51.7% | (many diffs) |
| 6 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001366446.1 | 54.3% | 50% | (many diffs) |
| 7 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XM_011510223.2 | 54.3% | 50% | (many diffs) |
| 8 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | XR_922004.1 | 54.3% | (many diffs) | |
| 9 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NM_001366449.1 | 38.8% | 37.2% | (many diffs) |
| 10 | human | 9910 | RABGAP1L | RAB GTPase activating prote... | NR_158982.1 | 19.5% | (many diffs) | |
| 11 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496879.3 | 77.1% | 76.8% | (many diffs) |
| 12 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | NM_013862.5 | 63.8% | 59.8% | (many diffs) |
| 13 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496877.2 | 51.4% | 48.5% | (many diffs) |
| 14 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496876.1 | 50.8% | 47.4% | (many diffs) |
| 15 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496875.1 | 49.6% | 46.8% | (many diffs) |
| 16 | mouse | 29809 | Rabgap1l | RAB GTPase activating prote... | XM_006496878.3 | 49.5% | 46.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1881
- ORF length:
- 1815
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGTCAGAGCT TCATTACAGA AGATAGTTTC TAATGGTGAT GAACAATTGG 121 AAAAAGCCAT GGAAGAGATT TTGAGAGATT CCGAGAAAAG GCCAAGCAGT CTTCTTGTTG 181 ATTGTCAGAG TTCCAGTGAG ATTTCAGACC ATTCGTTTGG AGATATTCCA GCCAGCCAAA 241 CAAATAAGCC ATCTCTTCAG TTAATTTTGG ATCCGTCTAA CACAGAAATT TCTACACCCA 301 GACCATCTTC TCCAGGTGGA CTACCTGAAG AAGATAGTGT TTTATTTAAT AAACTGACCT 361 ACTTAGGATG TATGAAGGTT TCTTCCCCAC GTAATGAAGT AGAGGCTTTA CGGGCAATGG 421 CAACCATGAA ATCTTCCAGT CAATACCCCT TTCCTGTTAC CCTGTATGTA CCAAATGTTC 481 CAGAAGGTTC TGTGAGAATT ATAGACCAAT CCAGCAATGT GGAGATAGCA TCTTTTCCAA 541 TCTATAAGGT GTTATTCTGT GCACGTGGAC ATGACGGAAC AACAGAGAGC AATTGCTTTG 601 CATTTACAGA GAGTTCCCAT GGTTCGGAAG AATTTCAGAT ACATGTTTTC TCCTGTGAAA 661 TTAAAGAGGC AGTAAGCAGA ATTTTGTACA GTTTCTGTAC AGCATTCAAA CGTTCTTCCA 721 GACAAGTGTC TGATGTTAAA GACTCAGTTA TTCCTACCCC CGACAGTGAT GTGTTTACCT 781 TCAGTGTCTC CTTGGAGGTA AAAGAAGACG ATGGAAAAGG AAACTTTAGC CCTGTGCCTA 841 AGGATAGAGA TAAATTTTAT TTCAAATTAA AGCAAGGAAT AGAGAAGAAG GTTGTGATTA 901 CAGTGCAGCA ACTTTCTAAC AAAGAATTAG CTATTGAAAG ATGTTTTGGA ATGTTATTAA 961 GCCCAGGTCG AAACGTGAAG AACAGTGACA TGCATTTACT GGATATGGAA TCCATGGGAA 1021 AGAGCTATGA TGGGAGAGCT TATGTCATCA CTGGCATGTG GAACCCCAAT GCACCAGTAT 1081 TTCTGGCACT TAACGAGGAA ACCCCAAAAG ATAAGCAAGT ATACATGACT GTGGCAGTGG 1141 ATATGGTAGT CACAGAGGTG GTGGAGCCTG TTCGCTTTCT CCTGGAGACA GTAGTCCGTG 1201 TGTACCCTGC AAATGAGCGA TTTTGGTATT TCAGCAGAAA GACTTTCACA GAGACCTTCT 1261 TCATGAGATT GAAACAGTCT GAGGGAAAAG GCCATACCAA TGCTGGAGAT GCAATATATG 1321 AGGTGGTGAG TCTACAGCGA GAGTCTGACA AGGAGGAACC AGTCACTCCT ACTAGTGGAG 1381 GGGGTCCAAT GTCACCCCAG GATGATGAAG CAGAAGAGGA GAGTGATAAT GAACTCTCAA 1441 GTGGAACAGG TGATGTGTCT AAGGATTGTC CTGAGAAGAT CCTGTATTCT TGGGGAGAGT 1501 TGCTAGGAAA ATGGCACAGT AACCTTGGTG CACGACCGAA AGGGCTGTCT ACTCTGGTGA 1561 AGAGTGGTGT CCCTGAAGCA TTGAGGGCAG AGGTATGGCA GTTATTGGCA GGCTGCCATG 1621 ACAACCAGGC AATGCTGGAT AGATACCGAA TTCTTATCAC AAAGCAACAG ATGAAATTTA 1681 GTCTTACACC GAGACAGACT ATTCACCTAG TTAAATATGA AGGGTCTATG AAGGTCTCCA 1741 TGACACCCTG TAACCAGCTG CAATTTGACA TTAGACTTGA TGTTCTGATT ACTTATACTT 1801 TTTGTTTTAG TTCCTTTCCT GAGCCTGAAT TGTACAAATA TGTCCTAAAA CACCAACTTA 1861 TTAAGAGGCT TAATGCCTGT TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1921 attgcttatc aatttgttgc aacgaac