Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11431
- Subject:
- XM_006496876.1
- Aligned Length:
- 3096
- Identities:
- 1574
- Gaps:
- 1308
Alignment
Query 1 ATGGAGGTCAGAG------CTTCATTA---------------------CAGAAGATAGTTTCTAATGGTGATGA 47
||||||..||.|| ||||..|| |.||||||||.|||.|||||||||||
Sbjct 1 ATGGAGCACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAGATAGCTTCCAATGGTGATGA 74
Query 48 ACAATTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTC 121
.||.||||||||||||||||||||||||||||||||||||||||||.|.|.||||.||||.|.|||||||||.|
Sbjct 75 GCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCTGTTGATTGCC 148
Query 122 AGAGTTCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAG 195
|..|.||||||||||||||||||..|.|.|||||||||.|.||.|||||||||||||.||||||..||||.|||
Sbjct 149 AAGGATCCAGTGAGATTTCAGACTGTCCCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCCGCCTCTCCAG 222
Query 196 TTAATTTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGA 269
||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||.|..||.|.|||||||||||
Sbjct 223 TTAATTTTGGATCCATCTAATACAGAAATTTCCACACCCAGACCATCTTCTCCAAGCAGATTTCCTGAAGAAGA 296
Query 270 TAGTGTTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTT 343
.||||||.|.|||||.||.|||||.||||||||||||||||||||||||||||||||.|.||||||.|||||||
Sbjct 297 CAGTGTTCTCTTTAACAAGCTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGCAGTGAAGTGGAGGCTT 370
Query 344 TACGGGCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCA 417
|||||||.|||||.|||||||.|.||||||||||.|||||||||.|||||||.||||||||.||.|||||||||
Sbjct 371 TACGGGCCATGGCCACCATGAGAGCTTCCAGTCAGTACCCCTTTGCTGTTACTCTGTATGTGCCCAATGTTCCA 444
Query 418 GAAGGTTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATT 491
|||||.|||||||||||.||||||||.||.|||||||||||||||||||||||||||||.|||||.|||.|.||
Sbjct 445 GAAGGATCTGTGAGAATCATAGACCAGTCAAGCAATGTGGAGATAGCATCTTTTCCAATTTATAAAGTGCTTTT 518
Query 492 CTGTGCACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAG 565
||||||||||||.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||||.||.||||
Sbjct 519 CTGTGCACGTGGGCATGATGGGACAGCCGAGAGCAATTGCTTTGCATTTACAGAGAGTTCTCATGGCTCAGAAG 592
Query 566 AATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCA 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.||.|||
Sbjct 593 AATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTATATAGTTTCTGCACTGCA 666
Query 640 TTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTAC 713
||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||||||||||||||||||||
Sbjct 667 TTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTCATCCCGACTCCCGACAGTGATGTGTTTAC 740
Query 714 CTTCAGTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATA 787
|||||||||.|||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||||||||||
Sbjct 741 CTTCAGTGTTTCCTTGGAGGTCAAAGAAGATGATGGAAAAGGAAACTTTAGTCCCGTGCCTAAGGATAGAGATA 814
Query 788 AATTTTATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAA 861
||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||
Sbjct 815 AATTTTATTTCAAAATAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTTCAGCAACTGTCTAACAAAGAA 888
Query 862 TTAGCTATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACT 935
|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTAGCTATTGAGAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACT 962
Query 936 GGATATGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCAC 1009
|||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.||||
Sbjct 963 GGATATGGAGTCCATGGGAAAGAGCTATGATGGGAGAGCTTACGTCATCACGGGCATGTGGAACCCCAACGCAC 1036
Query 1010 CAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTA 1083
||.||||||||||.|||||.||.|||||.||.||||||||.|..||.||||||||.||.||||||||.|||||.
Sbjct 1037 CAATATTTCTGGCTCTTAATGAAGAAACGCCCAAAGATAAACGGGTGTACATGACCGTTGCAGTGGACATGGTG 1110
Query 1084 GTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATT 1157
||||||||||||||||||||.||.||.||||||||||||||||||||.|||||.|||||||||||||||.||||
Sbjct 1111 GTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAAATGAGAGATT 1184
Query 1158 TTGGTATTTCAGCAGAAAGACTTTCACAGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATA 1231
|||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||||||||.|
Sbjct 1185 TTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAGTCTGAGGGAAAAGGCCACA 1258
Query 1232 CCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCT 1305
.||.|||||||||||||||||||||.|||||||||||.|||.||||.||||||||||||||.||..||||.|||
Sbjct 1259 GCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCCCATCACCCCT 1332
Query 1306 ACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGG 1379
|||||||..|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 1333 ACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCGAGTGG 1406
Query 1380 AACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACA 1453
|||||||||||||||.||.||.||||||||||||||.||.||||||||||||||.|||.||||||.||||||||
Sbjct 1407 AACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATTCTCTATTCTTGGGGAGAATTGTTAGGAAGATGGCACA 1480
Query 1454 GTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAG 1527
.|||||||||||..|||||.|||||.||.|..||..||||.|||||||||||.|||||.|||.|.||||||||.
Sbjct 1481 ATAACCTTGGTGGCCGACCAAAAGGACTATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACTAAGGGCAGAA 1554
Query 1528 GTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAGCA 1601
||||||||..||||.|||||.|||||||||||.||||.|||||||||||.|||||||||.||||||||||||.|
Sbjct 1555 GTATGGCAACTATTAGCAGGATGCCATGACAATCAGGAAATGCTGGATAAATACCGAATCCTTATCACAAAGGA 1628
Query 1602 ------ACAGATGAAATTTAGTCTTACACCGAGACAGACTATTCACC--------------------TAGTT-A 1648
||||..||...||| |||| .||||| ||||||.| ||.|| |
Sbjct 1629 CTCTGCACAGGAGAGTGTTA---TTAC-TCGAGA-----TATTCATCGTACATTTCCTGCACACGATTACTTCA 1693
Query 1649 AATA---TGAAGGGTCTATGAAGGTCTCCATGACACCCTGTA-ACCAGCTGCAATTTGACATTAGACTTGATGT 1718
||.| ||.||| .||.||| ||.||..||||.|| |..|.|||||| |.|.| |||.|.|||
Sbjct 1694 AAGACACTGGAGG-----CGATGGT---CAAGAATCCCTTTACAAAATCTGCAA---GGCCT---ACTCGGTGT 1753
Query 1719 TC--TGATTACTT---ATACT-------------TTTTGTTTTAGTTCCTTTCCT------------------- 1755
|| |||..||.| .|||| ||||.|| |.|.||.|.||
Sbjct 1754 TCGATGAAGACATTGGGTACTGTCAAGGACAGTCTTTTCTT---GCTGCTGTACTACTGTTGCATATGCCAGAG 1824
Query 1756 GAGCCTGAATTGT-----------ACAAATATGT------------------CCTAAAACACCAAC--TTATTA 1798
||||..|.|||.| ||.|.||||| .||.|.|||..||| ||.|.|
Sbjct 1825 GAGCAAGCATTCTGTGTTTTGGTGACTATTATGTATGGTTATAAATTGAGAGACTTATACAGAAACAATTTTGA 1898
Query 1799 AGAGGCTT-AATGC-----CTGT--------------------------------------------------- 1815
||| .||| |.||| ||.|
Sbjct 1899 AGA-TCTTCATTGCAAATTCTATCAACTTGAGAAACTAATGCAGGAACAGCTGCCAGACCTGTACAGCCACTTC 1971
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 1972 TGTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTCCTCACTCTCTTTACTGCCAAGTTTCCACT 2045
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2046 CTGCATGGTGTTCCACATCATTGACCTTCTGCTGTGTGAGGGTTTGAATATAATCTTTCATGTAGCTTTGGCTC 2119
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2120 TTCTAAAGACCTCAAAGGAAGACCTCCTTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTT 2193
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2194 CCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAACAGGCTTGCAATATTAAAGTACCAACCAA 2267
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2268 AAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGACCCAATGGATA 2341
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2342 GATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAAAATGATGACCTTGCCCAT 2415
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2416 GAACTAGTGACAAGCAAAATTGCTCTGCGGAATGACTTGGATCAGGCAGAAGACAAGGCTGATGTGCTGAATAA 2489
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2490 GGAGCTCCTCTTTACCAAGCAGAGGTTGGTGGAGACTGAGGAAGAGAAGAGGAAGCAAGAGGAGGAGACCGCCC 2563
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2564 AGCTAAAAGAAGTCTTCAGGAAACAGTTAGAAAAGGCAGAATATGAGATAAAGAAGACAACAGCTATCATTGCT 2637
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2638 GAGTATAAACAGATATGTTCTCAATTAAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTAGA 2711
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2712 AGCAGTAAAGGGTAAGATGATGGCATGCAAACACTGCAGTGATATCTTCAGCAAGGAAGGAGCTTTAAAGCCAG 2785
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2786 TGGCCGTAAATAGAGAGGACCAGGGACTTGAAGCAGATGATGAAAAGGACTCACTTAAGAAGCAGCTGAGGGAG 2859
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2860 ATGGAACTGGAACTGGCACAGACCAAACTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAGGAACTTGAGCATCA 2933
Query 1816 -------------------------------------------------------------------------- 1815
Sbjct 2934 GAGAGGAGCGCTTATGAATGAAATACAAGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAACTCTATCAAAA 3007
Query 1816 -------------------------------------------------------------- 1815
Sbjct 3008 CAGCCACAGGCACTCAGCCACTACAGCCGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACA 3069
