Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11434
- Subject:
- NM_001037727.2
- Aligned Length:
- 2015
- Identities:
- 1141
- Gaps:
- 712
Alignment
Query 1 ATGTCCCTC----------GG----------TCAGT-------CGGCCTGTCTGTTCCTCTC---TATAGCTCG 44
|||||.||| || |||.| ||| .|.|| || .||||||||
Sbjct 1 ATGTCTCTCAAGCTGCCAAGGAACTGGGATTTCAATTTGAAAGCGG--AGGCT-------TCAAAAATAGCTCG 65
Query 45 GTCAAGGAGTGTGATGACTGGCGAGCAGATGGCTGCCTTCCATCCATCGTCCACCCCCAACCCGCTGGAGAGGC 118
|||.||||||||||||||.||.|||||||||||.|||||.||.|||.|..||||.||||||||.|||||.||||
Sbjct 66 GTCGAGGAGTGTGATGACCGGGGAGCAGATGGCGGCCTTTCACCCACCCACCACTCCCAACCCCCTGGAAAGGC 139
Query 119 CCATCAAGATGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAGAACTGGCAGCAGAGGTACTTTGTGCTGAGG 192
|.||.|||.||||||||||||||||||||||||||||||||||.||||||||||||.|||||||||||.||||.
Sbjct 140 CAATTAAGGTGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAAAACTGGCAGCAGCGGTACTTTGTGTTGAGA 213
Query 193 GCGCAGCAGCTCTACTACTACAAGGATGAAGAGGACACGAAGCCCCAGGGCTGCATGTATCTACCAGGATGTAC 266
||.|||||.|||||||||||||||||.|||||||||.|.|||||.|||||||||||||||||.|||||..||||
Sbjct 214 GCTCAGCAACTCTACTACTACAAGGACGAAGAGGACTCAAAGCCACAGGGCTGCATGTATCTGCCAGGCAGTAC 287
Query 267 AATCAAGGAGATCGCCACAAACCCAGAAGAAGCTGGGAAGTTTGTCTTTGAAATCATTCCAGCCTCATGGGACC 340
|.||||.||.||.|||||||||||.||||||||||||||.||||||||||||.|.||||||||||||.|.||||
Sbjct 288 AGTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAAATTTGTCTTTGAAGTTATTCCAGCCTCAAGTGACC 361
Query 341 AGAATCGCATGGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGGGTTAAATTC 414
||||.|||||.|||||.||||||||.|||||||||||||||||.||||..||||||||||||||||||||.|||
Sbjct 362 AGAACCGCATTGGACAAGACTCCTACGTCCTCATGGCCAGCTCCCAGGTAGAGATGGAGGAGTGGGTTAAGTTC 435
Query 415 CTCAGGAGAGTTGCTGGCACACCCTGTGGAGCAGTGTTTGGCCAGCGCTTGGATGAGACTGTGGCCTATGAACA 488
||||||||||||||||||||.||||.||||||.||||||||||||||..||||||||||||||||||||||.||
Sbjct 436 CTCAGGAGAGTTGCTGGCACGCCCTCTGGAGCGGTGTTTGGCCAGCGTCTGGATGAGACTGTGGCCTATGAGCA 509
Query 489 GAAATTCGGCCCCCATCTGGTGCCCATCCTGGTGGAGAAATGTGCAGAGTTCATCCTGGAGCACGGCCGGAATG 562
|||.||.|||||.||.||||||||||||.||||||||||.||.||.||||||||||||||.||.||...||.||
Sbjct 510 GAAGTTTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTG 583
Query 563 AAGAGGGCATCTTCCGTCTGCCTGGGCAGGACAACCTGGTGAAGCAGCTGAGAGACGCTTTTGATGCTGGGGAG 636
||||||||||||||||.|||||.||||||||||||||.|||||||||||||||||.|||||.|||||.||||||
Sbjct 584 AAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAG 657
Query 637 CGGCCCTCCTTTGACAGAGACACAGATGTGCACACTGTGGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCC 710
|||||||||||||||||.|||||||||||||||||.|||||.||.||..||||||||||||||||||||||.||
Sbjct 658 CGGCCCTCCTTTGACAGGGACACAGATGTGCACACGGTGGCATCTCTACTAAAGCTCTACCTCCGAGACCTGCC 731
Query 711 AGAGCCCGTGGTTCCCTGGAGCCAGTACGAAGGGTTCCTGCTCTGTGGGCAGCTCACGAATGCGGATGAGGCAA 784
||||||.||||||||.|||||.|||||.||||||||||||||||||||||||||||.|||.||.||||||||||
Sbjct 732 AGAGCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGGCAA 805
Query 785 AGGCTCAGCAGGAGTTGATGAAGCAGCTCTCCATCCTTCCTCGTGACAACTATAGTCTCCTGAGCTACATCTGC 858
|||||||||||||||||.||||||||||.||.|.||||||.||.||||||||.|..||||||||||||||||||
Sbjct 806 AGGCTCAGCAGGAGTTGGTGAAGCAGCTTTCTACCCTTCCCCGAGACAACTACAACCTCCTGAGCTACATCTGC 879
Query 859 AGGTTCCTACATGAAATACAGCTGAACTGTGCTGTTAACAAGATGAGTGTGGACAACCTGGCTACTGTGATTGG 932
||.||.||.||||||||.||||||||||||||.||.|||||||||||.||||||||||||||.||||||||.||
Sbjct 880 AGATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGG 953
Query 933 TGTGAATCTCATCAGGTCGAAGGTCGAAGACCCTGCCGTGATCATGAGAGGGACTCCTCAGATCCAAAGAGTGA 1006
.|||||.|||||||||||||||||.||||||||.||.|||||.|||||||||||||||||||||||||||||||
Sbjct 954 GGTGAACCTCATCAGGTCGAAGGTTGAAGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGA 1027
Query 1007 TGACTATGATGATCAGAGACCATGAAGTCCTCTTCCCCAAGTCCAAGGATATACCCCTGTCACCCCCTGCCCAG 1080
||||.|||||||||||||||||.||||||||||||||||||||.||||||..|||..|.|||||||||||||||
Sbjct 1028 TGACCATGATGATCAGAGACCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAG 1101
Query 1081 AAAAATGACCCCAAGAAAGCTCCAGTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCTCCGAATTTC 1154
|||||.||..|||||||.|||||||||.|.|||||||||||.||.|||||||||||.|||||||..|...||||
Sbjct 1102 AAAAACGATGCCAAGAAGGCTCCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTC 1175
Query 1155 TAGGACAGACAGCTTCAGTAGCATGGTAAGGTGCAGAGAACCTTCCTGCTTCCATTGGGTTCTTCCTTTAGTCC 1228
||||||||||||||||||||.||..|.|||..| |||||.|.||| ||
Sbjct 1176 TAGGACAGACAGCTTCAGTAACACAGCAAGTAG----------TCCTGATGCCA------------------CC 1221
Query 1229 AGGCCATCCCA-TGTAAGGC--CTGCTCTCGGGTG----GCAATTTGGGGAGTTTTAGGTGATG-CAGTGG--- 1291
|| ||||| || |.| |||| |..||| ||| |.|| ||.| |||.||
Sbjct 1222 AG----TCCCACTG---GACCACTGC---CCAGTGACCAGCA------------TCAG--GAAGACAGCGGAAA 1271
Query 1292 ------CAG----------------TGGGCGCTGC--TGC--TACA--GACTCATCTGAACAC------ACCTT 1331
||| |||..|.||| |.| ||.| |||||| |||.| |||
Sbjct 1272 AGCCCCCAGGGAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCA----AACGCTTCCCAACC-- 1339
Query 1332 GAAAG-----CCT---GGCCTCTTTCC------------------------AAATCT---------AGTT---- 1360
|.||| ||| |.||.|.|||| |||||| ||||
Sbjct 1340 GGAAGTGTTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTTAAAAATGAGTTCTGG 1413
Query 1361 TCTATTGGCATCTT------------------------------------------------------------ 1374
||| .||||||
Sbjct 1414 TCT----CCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTT 1483
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1484 CCAATGACCAGCGGACTTCTACCTACGATAATGTCCCCACCTCACCACAGTCCCAAGGGAACCCAGCAGGTGCA 1557
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1558 CTCTCTCCCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGTTAGCACAGACTCTGAAATGGAGGCTGGAAGCAA 1631
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1632 GAACTCTGGCGAGGATGACCTTGATTCTCTGCAGAGGACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGA 1705
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1706 AGCAGGTCTATGAGGAACAGATTAAAAACCTGGAGAAGGAAAATTACGATGTCTGGGCTAAGGTGGTGAGGCTC 1779
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1780 AATGAAGAACTCGAGAGGGAGAGGAAGAAATTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCG 1853
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1854 GGAGGACGTTGAGAAGAGGAACAGAGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCA 1927
Query 1375 ----------------- 1374
Sbjct 1928 AGACAAAGACGGATCCT 1944
