Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11434
- Subject:
- NR_104483.1
- Aligned Length:
- 3891
- Identities:
- 1148
- Gaps:
- 2579
Alignment
Query 1 --------------ATGTCC-CT------CGGTCA----------------GTCGGC-----CT----GTCTGT 28
||.||| || |.|.|| |.|||| || |||.||
Sbjct 1 AGAGGCTCCAGCCAATCTCCGCTGTGCAGCAGGCAGGGCCGGAGGCAGCTGGACGGCAGGAGCTGGTCGTCAGT 74
Query 29 -----TCCT-------------CTCTAT-AGCTCGGTCAAGGAGTGTGATGACTGGCGAGCAGATGGCTGCCTT 83
|||| |.||.| |||||||||.||||||||||||||.||.|||||||||||.|||||
Sbjct 75 TGGGCTCCTTTCAGGAGCAGGACCCTGTGAGCTCGGTCGAGGAGTGTGATGACCGGGGAGCAGATGGCGGCCTT 148
Query 84 CCATCCATCGTCCACCCCCAACCCGCTGGAGAGGCCCATCAAGATGGGCTGGCTGAAGAAGCAGAGGTCCATCG 157
.||.|||.|..||||.||||||||.|||||.|||||.||.|||.||||||||||||||||||||||||||||||
Sbjct 149 TCACCCACCCACCACTCCCAACCCCCTGGAAAGGCCAATTAAGGTGGGCTGGCTGAAGAAGCAGAGGTCCATCG 222
Query 158 TGAAGAACTGGCAGCAGAGGTACTTTGTGCTGAGGGCGCAGCAGCTCTACTACTACAAGGATGAAGAGGACACG 231
||||.||||||||||||.|||||||||||.||||.||.|||||.|||||||||||||||||.|||||||||.|.
Sbjct 223 TGAAAAACTGGCAGCAGCGGTACTTTGTGTTGAGAGCTCAGCAACTCTACTACTACAAGGACGAAGAGGACTCA 296
Query 232 AAGCCCCAGGGCTGCATGTATCTACCAGGATGTACAATCAAGGAGATCGCCACAAACCCAGAAGAAGCTGGGAA 305
|||||.|||||||||||||||||.|||||..|||||.||||.||.||.|||||||||||.||||||||||||||
Sbjct 297 AAGCCACAGGGCTGCATGTATCTGCCAGGCAGTACAGTCAAAGAAATTGCCACAAACCCCGAAGAAGCTGGGAA 370
Query 306 GTTTGTCTTTGAAATCATTCCAGCCTCATGGGACCAGAATCGCATGGGACAGGACTCCTATGTCCTCATGGCCA 379
.||||||||||||.|.||||||||||||.|.||||||||.|||||.|||||.||||||||.|||||||||||||
Sbjct 371 ATTTGTCTTTGAAGTTATTCCAGCCTCAAGTGACCAGAACCGCATTGGACAAGACTCCTACGTCCTCATGGCCA 444
Query 380 GCTCTCAGGCGGAGATGGAGGAGTGGGTTAAATTCCTCAGGAGAGTTGCTGGCACACCCTGTGGAGCAGTGTTT 453
||||.||||..||||||||||||||||||||.|||||||||||||||||||||||.||||.||||||.||||||
Sbjct 445 GCTCCCAGGTAGAGATGGAGGAGTGGGTTAAGTTCCTCAGGAGAGTTGCTGGCACGCCCTCTGGAGCGGTGTTT 518
Query 454 GGCCAGCGCTTGGATGAGACTGTGGCCTATGAACAGAAATTCGGCCCCCATCTGGTGCCCATCCTGGTGGAGAA 527
||||||||..||||||||||||||||||||||.|||||.||.|||||.||.||||||||||||.||||||||||
Sbjct 519 GGCCAGCGTCTGGATGAGACTGTGGCCTATGAGCAGAAGTTTGGCCCTCACCTGGTGCCCATCTTGGTGGAGAA 592
Query 528 ATGTGCAGAGTTCATCCTGGAGCACGGCCGGAATGAAGAGGGCATCTTCCGTCTGCCTGGGCAGGACAACCTGG 601
.||.||.||||||||||||||.||.||...||.||||||||||||||||||.|||||.||||||||||||||.|
Sbjct 593 GTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTGAAGAGGGCATCTTCCGCCTGCCCGGGCAGGACAACCTTG 666
Query 602 TGAAGCAGCTGAGAGACGCTTTTGATGCTGGGGAGCGGCCCTCCTTTGACAGAGACACAGATGTGCACACTGTG 675
||||||||||||||||.|||||.|||||.|||||||||||||||||||||||.|||||||||||||||||.|||
Sbjct 667 TGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCTCCTTTGACAGGGACACAGATGTGCACACGGTG 740
Query 676 GCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGCCCGTGGTTCCCTGGAGCCAGTACGAAGGGTTCCT 749
||.||.||..||||||||||||||||||||||.||||||||.||||||||.|||||.|||||.|||||||||||
Sbjct 741 GCATCTCTACTAAAGCTCTACCTCCGAGACCTGCCAGAGCCTGTGGTTCCTTGGAGTCAGTATGAAGGGTTCCT 814
Query 750 GCTCTGTGGGCAGCTCACGAATGCGGATGAGGCAAAGGCTCAGCAGGAGTTGATGAAGCAGCTCTCCATCCTTC 823
|||||||||||||||||.|||.||.|||||||||||||||||||||||||||.||||||||||.||.|.|||||
Sbjct 815 GCTCTGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCTCAGCAGGAGTTGGTGAAGCAGCTTTCTACCCTTC 888
Query 824 CTCGTGACAACTATAGTCTCCTGAGCTACATCTGCAGGTTCCTACATGAAATACAGCTGAACTGTGCTGTTAAC 897
|.||.||||||||.|..||||||||||||||||||||.||.||.||||||||.||||||||||||||.||.|||
Sbjct 889 CCCGAGACAACTACAACCTCCTGAGCTACATCTGCAGATTTCTGCATGAAATCCAGCTGAACTGTGCCGTCAAC 962
Query 898 AAGATGAGTGTGGACAACCTGGCTACTGTGATTGGTGTGAATCTCATCAGGTCGAAGGTCGAAGACCCTGCCGT 971
||||||||.||||||||||||||.||||||||.||.|||||.|||||||||||||||||.||||||||.||.||
Sbjct 963 AAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAACCTCATCAGGTCGAAGGTTGAAGACCCAGCTGT 1036
Query 972 GATCATGAG----------------------------------------------------------------- 980
|||.|||||
Sbjct 1037 GATTATGAGAGGTACACAGGCTGATCCTGCAGGGAAGCGGCTTGCTGGGCGTGACAGCGAGAACACTGCCCCCT 1110
Query 981 -------------------------------------------------------------------------- 980
Sbjct 1111 AGTGTCCGTTTGATGTCCTGCCGCTTACCGAGCTTGCCTACTTGACCTCTTCTGACTTTATTAACATCCCCCAT 1184
Query 981 -------------------------------------------------------------------------- 980
Sbjct 1185 GAGGTCAGCAGTGCAGGAATTAGGTCCCCTGTTCAATGGTCACGGATCGCAGCAGTCTAACCTCAAACCAATTA 1258
Query 981 -------------------------------------------------------------------------- 980
Sbjct 1259 ACTAGTGCTTTCCAGTCCTTTTATGACTTTAACATACCTTTAGCCAAGAAGAGCAAACAGGGTTTTATTTTACA 1332
Query 981 -------------------------------------------------------------------------- 980
Sbjct 1333 AGCCGGTTTCACAAAATGGTTGCTGTAAAGCTTGGCTGAAAGCTTTCTAAGGTCGTGACTTGGCTCAATAAGCA 1406
Query 981 -------------------------------------------------------------------------- 980
Sbjct 1407 AAAGTCCTGGCCGAGAAGACTCGTGATGGACGTGGGGAGGAAGTGTCCCTGACACCCATTTGCTTCAGGAGTAA 1480
Query 981 ----------------------------AGGGACTCCTCAGATCCAAAGAGTGATGACTATGATGATCAGAGAC 1026
||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1481 TAACAAGACAGACCGTATTGAGGACCACAGGGACTCCTCAGATCCAAAGAGTGATGACCATGATGATCAGAGAC 1554
Query 1027 CATGAAGTCCTCTTCCCCAAGTCCAAGGATATACCCCTGTCACCCCCTGCCCAGAAAAATGACCCCAAGAAAGC 1100
||.||||||||||||||||||||.||||||..|||..|.||||||||||||||||||||.||..|||||||.||
Sbjct 1555 CACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAACGATGCCAAGAAGGC 1628
Query 1101 TCCAGTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACAGACAGCTTCAGTA 1174
|||||||.|.|||||||||||.||.|||||||||||.|||||||..|...||||||||||||||||||||||||
Sbjct 1629 TCCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACAGACAGCTTCAGTA 1702
Query 1175 GCATGGTAAGGTGCAGAGAACCTTCCTGCTTCCATTGGGTTCTTCCTTTAGTCCAGGCCATCCCA-TGTAAGGC 1247
.||..|.|||..| |||||.|.||| |||| ||||| || |.|
Sbjct 1703 ACACAGCAAGTAG----------TCCTGATGCCA------------------CCAG----TCCCACTG---GAC 1741
Query 1248 --CTGCTCTCGGGTG----GCAATTTGGGGAGTTTTAGGTGATG-CAGTGG---------CAG----------- 1294
|||| |..||| ||| |.|| ||.| |||.|| |||
Sbjct 1742 CACTGC---CCAGTGACCAGCA------------TCAG--GAAGACAGCGGAAAAGCCCCCAGGGAAAACCCAG 1798
Query 1295 -----TGGGCGCTGC--TGC--TACA--GACTCATCTGAACAC------ACCTTGAAAG-----CCT---GGCC 1343
|||..|.||| |.| ||.| |||||| |||.| ||| |.||| ||| |.||
Sbjct 1799 GAGACTGGAAGATGCAATCCCGTAAAAGGACTCA----AACGCTTCCCAACC--GGAAGTGTTTCCTGACGTCC 1866
Query 1344 TCTTTCC------------------------AAATCT---------AGTT----TCTATTGGCATCTT------ 1374
.|.|||| |||||| |||| ||| .||||||
Sbjct 1867 GCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTTAAAAATGAGTTCTGGTCT----CCATCTTCAGAGG 1936
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1937 CTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTCCAATGACCAGCGGACTTCT 2010
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2011 ACCTACGATAATGTCCCCACCTCACCACAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTCCCCCTGCCAGTGA 2084
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2085 CTCCAAGAGAGATGCTCTTGTTAGCACAGACTCTGAAATGGAGGCTGGAAGCAAGAACTCTGGCGAGGATGACC 2158
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2159 TTGATTCTCTGCAGAGGACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGAAGCAGGTCTATGAGGAACAG 2232
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2233 ATTAAAAACCTGGAGAAGGAAAATTACGATGTCTGGGCTAAGGTGGTGAGGCTCAATGAAGAACTCGAGAGGGA 2306
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2307 GAGGAAGAAATTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGACGTTGAGAAGAGGA 2380
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2381 ACAGAGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAAGACGGATCCTTGA 2454
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2455 GGGTCTGAGTGGTGTGGCAGGGACAGTCAACTCCACTCCATTTCTTCATGCTCCTAGTGAGCTGGAAGCAGGGT 2528
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2529 TACCTCCTAGGATGGACAGGGTATCTGAGGGATGTGCCACAATCCTCAGCAAATACACAGAAGTTGAGAGTGTA 2602
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2603 CAGGAGCACACCAGGACACTTGCCACCCTGTGCTGTGCTCCAAGGATTGCGTTATTCCACTGTGGGAAGAGTGA 2676
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2677 ACTGGAATCTTCCAGTGTATGACCAGGTCCAAAGGAGACATTTAAGGTGTGTGACATCTCAGGACCCCAGGCCA 2750
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2751 GAGCTGGGCCAAGGCCTCAGTTCTTTGTTGTCTCTGTGGCTGTCTTGCCTAGTCAGATGGTTCTGGTCGCTCTA 2824
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2825 AAACATGGCCAGAAAATATTTCTTCACTCTCCAGTGCTGGCCAACTGAGGGCTGCTTGGAGAGGCTGAACTGTT 2898
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2899 GGAATCCAGGATCAAACAATATTTATGAAAGCAAAATGAGTGAGAAAATTATATTCAAATAAAGAAAACAGAAA 2972
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2973 ACAAAAATTGAGCAAGGATATTGGCAATCTAATGAAACACTTTTATTAGAATTAGTAAAAGGGGGTTTGGTAAA 3046
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3047 ATTAGTAAAAGCTGGCTCTGTGGCTGAGAGCACTGGCTGCTCTTTCAGAGGACTCAGCATCCACACGATGATGG 3120
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3121 CTAACAAACCTCTGTAGCTCCAGTTCCAGGAGATCTGACACCCTCTGAGGACACCATATATACATATGCTGCCC 3194
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3195 ATACATATATGCAAACAAACAAACACCCGTACACATCAAATACACACACACACACACACATACATACATACATA 3268
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3269 CATACATTCCAACAACAAAGAAAAAAATAATTAGTAAAAGGCACCTCTTGCCTGAAGCAGGTGAATCTTTCTTG 3342
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3343 TGGTACATGGCTGTGTGACCAGGGCTTTGGGTTCCATCCTGAGTCACCCTCCAGTGGACAAAACTTGTCTGCAA 3416
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3417 AGTCTCAGAGCAAAGGTTTCCAACTATGAAATGACTTTAGGGGTGTGGATTTGTATAGTGAATAGTCAAGATTA 3490
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3491 TTAATTATTATTGTCATTGTTGTTATTGCTATTCTACTTCAACAAAATGAAAATGGGTTTATTTGCTCTTTAGA 3564
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3565 GGGGGATCAGGCACAATCATCTGTTTTCTCAACTATAGCTAATGCCACCTGCCTTTTGCTGAGTTAATTATAAA 3638
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3639 AACAACCAACCAACAATATCGCTGATTACTCTCTGGCCACAATGGTCTCCCTGCTCCCGTGGCTTGCCCCAGGT 3712
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 3713 GGCAGTACCGCCCCAATTGCTGCTGTTGGCTTGCCACTGAACCTCTGTATTCTCAGTCATCTATTCCTTGCGGC 3786
Query 1375 ------------------------------------------- 1374
Sbjct 3787 TAGCTGTCACAAATCCTCTGTAACCCAGTAAAATCAAAACTCT 3829
