Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11434
- Subject:
- XM_017321530.1
- Aligned Length:
- 2378
- Identities:
- 1044
- Gaps:
- 1183
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGATCTGTTGGAGAGACCCTGTTGGGCAGAGAGATCCAAGCTACAGGCTGGCTTCCCAGAATGGCTATAGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGCCAGGCACTTTCTGGCGGTCTCTGCAGCTGTGTGGACCTTACTCTAAGCACAGAGCGGGGCACTATTTTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCCCCTGTCAGATACTCCCACGCAGGAAAAGGAAGCACCTTCCGTCAGATGCTGTGGCCACTTCCTCTTCAGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTCCAGCCAATCTCCGCTGTGCAGCAGGCAGGGCCGGAGGCAGCTGGACGGCAGGAGCTGGTCGTCAGTTGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCCTTTCAGGAGCAGGACCCTGTGAGGTGTGGGGGACAACAGGGTTTCCTCTCAGCCTCCCCCACCCTTACCC 370
Query 1 -----------------------ATGTCCCTCGGTCAGTCGGCCTGTCTGTTCCTCTCTATAGCTCGGTCAAGG 51
||.||||||||||||.|.||||.||||||||||||..||||||||||.|||
Sbjct 371 CCTCTCTCTTGACTTTGTGCTTCATTTCCCTCGGTCAGCCCGCCTATCTGTTCCTCTCCTTAGCTCGGTCGAGG 444
Query 52 AGTGTGATGACTGGCGAGCAGATGGCTGCCTTCCATCCATCGTCCACCCCCAACCCGCTGGAGAGGCCCATCAA 125
|||||||||||.||.|||||||||||.|||||.||.|||.|..||||.||||||||.|||||.|||||.||.||
Sbjct 445 AGTGTGATGACCGGGGAGCAGATGGCGGCCTTTCACCCACCCACCACTCCCAACCCCCTGGAAAGGCCAATTAA 518
Query 126 GATGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAGAACTGGCAGCAGAGGTACTTTGTGCTGAGGGCGCAGC 199
|.||||||||||||||||||||||||||||||||||.||||||||||||.|||||||||||.||||.||.||||
Sbjct 519 GGTGGGCTGGCTGAAGAAGCAGAGGTCCATCGTGAAAAACTGGCAGCAGCGGTACTTTGTGTTGAGAGCTCAGC 592
Query 200 AGCTCTACTACTACAAGGATGAAGAGGACACGAAGCCCCAGGGCTGCATGTATCTACCAGGATGTACAATCAAG 273
|.|||||||||||||||||.|||||||||.|.|||||.|||||||||||||||||.|||||..|||||.||||.
Sbjct 593 AACTCTACTACTACAAGGACGAAGAGGACTCAAAGCCACAGGGCTGCATGTATCTGCCAGGCAGTACAGTCAAA 666
Query 274 GAGATCGCCACAAACCCAGAAGAAGCTGGGAAGTTTGTCTTTGAAATCATTCCAGCCTCATGGGACCAGAATCG 347
||.||.|||||||||||.||||||||||||||.||||||||||||.|.|||||
Sbjct 667 GAAATTGCCACAAACCCCGAAGAAGCTGGGAAATTTGTCTTTGAAGTTATTCC--------------------- 719
Query 348 CATGGGACAGGACTCCTATGTCCTCATGGCCAGCTCTCAGGCGGAGATGGAGGAGTGGGTTAAATTCCTCAGGA 421
Sbjct 720 -------------------------------------------------------------------------- 719
Query 422 GAGTTGCTGGCACACCCTGTGGAGCAGTGTTTGGCCAGCGCTTGGATGAGACTGTGGCCTATGAACAGAAATTC 495
|||.||||||||||||||..||||||||||||||||||||||.|||||.||.
Sbjct 720 ----------------------AGCGGTGTTTGGCCAGCGTCTGGATGAGACTGTGGCCTATGAGCAGAAGTTT 771
Query 496 GGCCCCCATCTGGTGCCCATCCTGGTGGAGAAATGTGCAGAGTTCATCCTGGAGCACGGCCGGAATGAAGAGGG 569
|||||.||.||||||||||||.||||||||||.||.||.||||||||||||||.||.||...||.|||||||||
Sbjct 772 GGCCCTCACCTGGTGCCCATCTTGGTGGAGAAGTGCGCTGAGTTCATCCTGGAACATGGTGTGAGTGAAGAGGG 845
Query 570 CATCTTCCGTCTGCCTGGGCAGGACAACCTGGTGAAGCAGCTGAGAGACGCTTTTGATGCTGGGGAGCGGCCCT 643
|||||||||.|||||.||||||||||||||.|||||||||||||||||.|||||.|||||.|||||||||||||
Sbjct 846 CATCTTCCGCCTGCCCGGGCAGGACAACCTTGTGAAGCAGCTGAGAGATGCTTTCGATGCGGGGGAGCGGCCCT 919
Query 644 CCTTTGACAGAGACACAGATGTGCACACTGTGGCTTCCCTGTTAAAGCTCTACCTCCGAGACCTCCCAGAGCCC 717
||||||||||.|||||||||||||||||.|||||.||.||..||||||||||||||||||||||.||||||||.
Sbjct 920 CCTTTGACAGGGACACAGATGTGCACACGGTGGCATCTCTACTAAAGCTCTACCTCCGAGACCTGCCAGAGCCT 993
Query 718 GTGGTTCCCTGGAGCCAGTACGAAGGGTTCCTGCTCTGTGGGCAGCTCACGAATGCGGATGAGGCAAAGGCTCA 791
||||||||.|||||.|||||.||||||||||||||||||||||||||||.|||.||.|||||||||||||||||
Sbjct 994 GTGGTTCCTTGGAGTCAGTATGAAGGGTTCCTGCTCTGTGGGCAGCTCATGAACGCAGATGAGGCAAAGGCTCA 1067
Query 792 GCAGGAGTTGATGAAGCAGCTCTCCATCCTTCCTCGTGACAACTATAGTCTCCTGAGCTACATCTGCAGGTTCC 865
||||||||||.||||||||||.||.|.||||||.||.||||||||.|..||||||||||||||||||||.||.|
Sbjct 1068 GCAGGAGTTGGTGAAGCAGCTTTCTACCCTTCCCCGAGACAACTACAACCTCCTGAGCTACATCTGCAGATTTC 1141
Query 866 TACATGAAATACAGCTGAACTGTGCTGTTAACAAGATGAGTGTGGACAACCTGGCTACTGTGATTGGTGTGAAT 939
|.||||||||.||||||||||||||.||.|||||||||||.||||||||||||||.||||||||.||.|||||.
Sbjct 1142 TGCATGAAATCCAGCTGAACTGTGCCGTCAACAAGATGAGCGTGGACAACCTGGCCACTGTGATCGGGGTGAAC 1215
Query 940 CTCATCAGGTCGAAGGTCGAAGACCCTGCCGTGATCATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACTAT 1013
|||||||||||||||||.||||||||.||.|||||.|||||||||||||||||||||||||||||||||||.||
Sbjct 1216 CTCATCAGGTCGAAGGTTGAAGACCCAGCTGTGATTATGAGAGGGACTCCTCAGATCCAAAGAGTGATGACCAT 1289
Query 1014 GATGATCAGAGACCATGAAGTCCTCTTCCCCAAGTCCAAGGATATACCCCTGTCACCCCCTGCCCAGAAAAATG 1087
|||||||||||||||.||||||||||||||||||||.||||||..|||..|.||||||||||||||||||||.|
Sbjct 1290 GATGATCAGAGACCACGAAGTCCTCTTCCCCAAGTCTAAGGATGCACCGATCTCACCCCCTGCCCAGAAAAACG 1363
Query 1088 ACCCCAAGAAAGCTCCAGTGGCCCGAAGCTCTGTAGGCTGGGATGCCACTGAAGACCTCCGAATTTCTAGGACA 1161
|..|||||||.|||||||||.|.|||||||||||.||.|||||||||||.|||||||..|...|||||||||||
Sbjct 1364 ATGCCAAGAAGGCTCCAGTGCCGCGAAGCTCTGTGGGGTGGGATGCCACGGAAGACCCACCCCTTTCTAGGACA 1437
Query 1162 GACAGCTTCAGTAGCATGGTAAGGTGCAGAGAACCTTCCTGCTTCCATTGGGTTCTTCCTTTAGTCCAGGCCAT 1235
|||||||||||||.||..|.|||..| |||||.|.||| |||| |
Sbjct 1438 GACAGCTTCAGTAACACAGCAAGTAG----------TCCTGATGCCA------------------CCAG----T 1479
Query 1236 CCCA-TGTAAGGC--CTGCTCTCGGGTG----GCAATTTGGGGAGTTTTAGGTGATG-CAGTGG---------C 1292
|||| || |.| |||| |..||| ||| |.|| ||.| |||.|| |
Sbjct 1480 CCCACTG---GACCACTGC---CCAGTGACCAGCA------------TCAG--GAAGACAGCGGAAAAGCCCCC 1533
Query 1293 AG----------------TGGGCGCTGC--TGC--TACA--GACTCATCTGAACAC------ACCTTGAAAG-- 1336
|| |||..|.||| |.| ||.| |||||| |||.| ||| |.|||
Sbjct 1534 AGGGAAAACCCAGGAGACTGGAAGATGCAATCCCGTAAAAGGACTCA----AACGCTTCCCAACC--GGAAGTG 1601
Query 1337 ---CCT---GGCCTCTTTCC------------------------AAATCT---------AGTT----TCTATTG 1367
||| |.||.|.|||| |||||| |||| |||
Sbjct 1602 TTTCCTGACGTCCGCATTCCAAGGCACCACCAGCAGTAAACTGGAAATCTTTAAAAATGAGTTCTGGTCT---- 1671
Query 1368 GCATCTT------------------------------------------------------------------- 1374
.||||||
Sbjct 1672 CCATCTTCAGAGGCTAAGGCAGGAGAAGGGCACAGGCGAACTATGTCCCAAGACTTGCGCCACCTTTCCAATGA 1745
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1746 CCAGCGGACTTCTACCTACGATAATGTCCCCACCTCACCACAGTCCCAAGGGAACCCAGCAGGTGCACTCTCTC 1819
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1820 CCCCTGCCAGTGACTCCAAGAGAGATGCTCTTGTTAGCACAGACTCTGAAATGGAGGCTGGAAGCAAGAACTCT 1893
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1894 GGCGAGGATGACCTTGATTCTCTGCAGAGGACAGTCCAGAGCCTACAGAAGGAAATAGAAACCCAGAAGCAGGT 1967
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 1968 CTATGAGGAACAGATTAAAAACCTGGAGAAGGAAAATTACGATGTCTGGGCTAAGGTGGTGAGGCTCAATGAAG 2041
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2042 AACTCGAGAGGGAGAGGAAGAAATTCGCGGCCCTGGAAATCAGCCTTCGAAATGTGGAGCGCTCCCGGGAGGAC 2115
Query 1375 -------------------------------------------------------------------------- 1374
Sbjct 2116 GTTGAGAAGAGGAACAGAGTCTTGGAAGAAGAAGTCAAGGAGTTTGTGAAGTCGATGGAGAAGCCCAAGACAAA 2189
Query 1375 ---------- 1374
Sbjct 2190 GACGGATCCT 2199
