Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11444
- Subject:
- XR_001747708.2
- Aligned Length:
- 4081
- Identities:
- 926
- Gaps:
- 3145
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CAAACATTGCCATAACCTGTTTGAAGGAACTTGAGCTTCAGGGTTACAAAACTGCTTCTGCTATGATGGAGAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGAGGAAAAAATGCTTAGATAAGAGCAATTTAACTTAAATGGAGGAAGTGTGTCTATATTGACAAAAGTCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGACTTGTTGAGCCAGCTAACTGGGCTTTTTACAATGGCTTTTCAAGATTGCAGATGCCGCCTACAGAGACGAC 222
Query 1 -----------------------------------------------------------------ATGGCGGAA 9
|||||||||
Sbjct 223 AGTCATATTTGAGCCCCGAAGCTCGCGAATGTAGCAGGCGCCCCAAGCTCGGTCCTCAAGAAGCCATGGCGGAA 296
Query 10 TCCAGGGGCCGTCTGTACCTTTGGATGTGCTTGGCTGCTGCGCTGGCATCTTTCCTGATGGGATTTATGGTGGG 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCAGGGGCCGTCTGTACCTTTGGATGTGCTTGGCTGCTGCGCTGGCATCTTTCCTGATGGGATTTATGGTGGG 370
Query 84 CTGGTTTATTAAGCCTCTCAAAGAAACAACCACTTCTGTGCGCTATCATCAAAGTATACGGTGGAAACTGGTAT 157
|||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGGTTTATTAAGCCTCTCAAAGAAACGACCACTTCTGTGCGCTATCATCAAAGTATACGGTGGAAACTGGTAT 444
Query 158 CCGAAATGAAAGCTGAAAACATCAAATCATTTCTTCGTTCTTTTACAAAGCTTCCTCATCTGGCAGGAACAGAA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCGAAATGAAAGCTGAAAACATCAAATCATTTCTTCGTTCTTTTACAAAGCTTCCTCATCTGGCAGGAACAGAA 518
Query 232 CAAAATTTCTTGCTTGCCAAGAAAATCCAAACCCAGTGGAAGAAATTTGGACTAGATTCAGCCAAGTTGGTTCA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAAATTTCTTGCTTGCCAAGAAAATCCAAACCCAGTGGAAGAAATTTGGACTAGATTCAGCCAAGTTGGTTCA 592
Query 306 TTATGATGTCCTCTTATCTTACCCCAATGAGACAAATGCCAACTATATATCGATTGTGGATGAACATGAAACTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTATGATGTCCTCTTATCTTACCCCAATGAGACAAATGCCAACTATATATCGATTGTGGATGAACATGAAACTG 666
Query 380 AGATTTTCAAAACATCATACCTTGAACCACCACCAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATAT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATTTTCAAAACATCATACCTTGAACCACCACCAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATAT 740
Query 454 AATGCTTTCTCAGCCCAAGGCATGCCAGAGGGAGATCTTGTATATGTGAACTATGCTCGCACTGAAGACTTTTT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AATGCTTTCTCAGCCCAAGGCATGCCAGAGGGAGATCTTGTATATGTGAACTATGCTCGCACTGAAGACTTTTT 814
Query 528 CAAACTAGAAAGAGAGATGGGCATCAACTGTACTGGGAAGATTGTTATTGCAAGATATGGAAAAATCTTCAGAG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAAACTAGAAAGAGAGATGGGCATCAACTGTACTGGGAAGATTGTTATTGCAAGATATGGAAAAATCTTCAGAG 888
Query 602 GAAATAAAGTTAAAAATGCCATGTTAGCAGGAGCCATAGGAATCATCTTGTACTCAGATCCAGCTGACTACTTT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAATAAAGTTAAAAATGCCATGTTAGCAGGAGCCATAGGAATCATCTTGTACTCAGATCCAGCTGACTACTTT 962
Query 676 GCTCCTGAGGTACAGCCATATCCCAAAGGATGGAATCTTCCTGGAACTGCAGCCCAGAGAGGAAATGTGTTAAA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCTCCTGAGGTACAGCCATATCCCAAAGGATGGAATCTTCCTGGAACTGCAGCCCAGAGAGGAAATGTGTTAAA 1036
Query 750 TTTGAATGGTGCTGGTGACCCACTCACTCCAGGCTATCCAGCAAAAGAATACACTTTCAGACTTGATGTTGAAG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTGAATGGTGCTGGTGACCCACTCACTCCAGGCTATCCAGCAAAAGAATACACTTTCAGACTTGATGTTGAAG 1110
Query 824 AAGGAGTGGGAATCCCCCGAATACCTGTACATCCCATTGGATATAATGATGCAGAAATATTATTACGGTATAGT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1111 AAGGAGTGGGAATCCCCCGAATACCTGTACATCCCATTGGATATAATGATGCAGAAATATTATTACGCTA---- 1180
Query 898 TTTCTTG-------TTG--------GATATGAGAT------------------TAAGATATTTTGCACTAGT-- 936
|||| ||| ||||.|||.| |.||.|| ||||
Sbjct 1181 ---CTTGGGAGGAATTGCTCCACCAGATAAGAGTTGGAAGGGAGCCCTTAATGTGAGTTA--------TAGTAT 1243
Query 937 ------TGTCT------------ATTTTCTCAT----------------------------------------- 951
||.|| |||.|.|||.
Sbjct 1244 CGGACCTGGCTTTACAGGGAGTGATTCTTTCAGGAAGGTTAGAATGCATGTTTATAACATCAATAAAATTACAA 1317
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1318 GGATTTACAATGTAGTTGGAACTATCAGAGGATCTGTGGAACCTGACAGGTATGTTATTCTGGGAGGTCACCGG 1391
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1392 GACTCCTGGGTATTTGGAGCTATTGACCCAACCAGTGGGGTTGCTGTTTTGCAAGAAATTGCCCGGAGTTTTGG 1465
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1466 AAAACTGATGAGTAAAGGCTGGAGACCTAGAAGAACTATCATTTTTGCCAGCTGGGATGCAGAAGAATTTGGAC 1539
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1540 TTCTGGGTTCCACAGAATGGGCTGAGGTCTGCAACTTTACTCGTGAAGCCAGTGAGACTACGAACCCACCAGGA 1613
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1614 GGAAGGAACAACTCCAGATGGGCCGCCTTAAGAGTAACACTCACCGTGAAGGTCTGCAGCTTCACTTCTGAGCC 1687
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1688 AGCGAGACCACAAACCCACCAGAAGGAAGAAACTCTGAACACATCCGAACATCAGTAGGAATAAACTCCGGACA 1761
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1762 CGCCGCCTTTAAGAACGGTAACACTCACCGCGAGGGTCCGCGGCTTCATTCTTGAAGTCAGTGAGATCAAGAAC 1835
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1836 CCACCAATTCTGGACACAGTGGCACACACCTGTAATCCCGGGTACTCCGGAGGCTGAGTCAAGAGAATTGTTTG 1909
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1910 AACCTGGGAGGCCGTGGTTGCAGTGAGCTGAGATCGTGCCGCTGCATTCTAGCCTGGGCAACAGAGAGAATGTC 1983
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1984 AAAATACTCCAGGAGAGAAGCATTGCTTATATCAACTCGGATTCATCTATAGAAGGCAATTATACTCTCAGAGT 2057
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2058 TGACTGTACTCCCCTTCTTTACCAATTAGTGTATAAACTGACAAAAGAGATCCCCAGCCCTGATGATGGGTTTG 2131
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2132 AGAGTAAATCACTGTATGAAAGCTGGTTGGAAAAAGACCCTTCACCTGAAAATAAAAATTTGCCTAGAATCAAT 2205
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2206 AAGCTGGGATCTGGAAGTGACTTTGAAGCTTATTTTCAGAGACTTGGAATTGCTTCAGGCAGAGCCCGTTACAC 2279
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2280 TAAGAATAAGAAAACAGATAAGTACAGCAGCTACCCAGTGTACCACACAATTTATGAGACATTTGAATTGGTAG 2353
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2354 AGAAATTTTATGACCCCACATTTAAAAAACAACTTTCTGTGGCTCAATTACGAGGAGCACTGGTATATGAGCTT 2427
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2428 GTGGATTCTAAAATCATTCCTTTTAATATTCAAGACTATGCAGAAGCTTTGAAAAACTATGCAGCAAGTATCTA 2501
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2502 TAATCTATCTAAGAAACATGATCAACAATTGACAGACCATGGAGTATCATTTGACTCCTTATTTTCTGCTGTGA 2575
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2576 AAAACTTCTCAGAGGCTGCTTCAGATTTTCATAAACGACTTATACAAGTTGATCTTAACAATCCCATTGCAGTG 2649
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2650 AGAATGATGAATGACCAACTGATGCTCCTGGAAAGAGCATTCATCGATCCTCTTGGTTTACCAGGAAAGCTGTT 2723
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2724 CTATAGGCACATCATATTTGCTCCAAGTAGCCACAACAAATATGCTGGAGAATCATTTCCTGGAATCTATGATG 2797
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2798 CTATCTTTGATATTGAAAATAAAGCCAACTCTCGTTTGGCCTGGAAAGAAGTAAAGAAACATATTTCTATTGCA 2871
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2872 GCTTTTACAATTCAAGCAGCAGCAGGAACTCTGAAAGAAGTATTATAGAAGGTCTCAAGTGGCTAGCCATTAAA 2945
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2946 GGTGTTGCTAAAAGTCTGAGGATAAAATTCACCTTTCTGATAACTTATGAAGCCAGGGTGTTCTAAACTCTTTT 3019
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3020 CATGTCATGTTTTGATTATAGGCTTTGGTCTTTTCATCTGCAAAGCCTTTTTTTTTTGCTCTTTAAAAGTTAAT 3093
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3094 AATTATATTAGCAAAGTGTTAATCTAATGAAGTAAAAAACTCCTGTGTGGCAGAAAGTAAAAGAAAATTCCCTA 3167
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3168 AATTATAGCAAGGAACATGAATTCTCAGACATTGTGAGTGTGGGAATGTAAAATGGTAAAATCACTTTTGAAAA 3241
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3242 CAGTTTGGCAGTTTCCTATAAAGTTAAACATACACTTTTACTTTAGGACTCCAGAATTCCACTTCTAGTTATTT 3315
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3316 ATTCAAGAGAAGGAAAAACAATGATCACAGCAATACTTGTATGCATGTTCATTGCAACTTAAAAGCGTAAAAAC 3389
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3390 CCCAAATGTCCATCCACAGACGAATGTATAAACTGTGGTATCCATTACACAATAGACTACTTACTACTCAGCAA 3463
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3464 TAAAAATGAAGTAACTTTCAATAAATGCAATATTATTGGCAGACATTGTTGAAGGAAAAAAGCCAGACAAACAA 3537
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3538 CTACATAAAATATGTTTCTATTTAGATGAAGTGGCAAACTAATCTGTAGTGTTAAAAATTAGATTAGTGATTGC 3611
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3612 CTGGGCCAAGTGGCAGGTTGGGGAGGATGGCTGCAAAGAAGTATGAGGAAACTTTCTCCAATAGATGAGAATTT 3685
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3686 TCCGTATCTTGATCTGAGTGGCAAATTGTAAACTTAAAATATATATAAAATTTATTGTATGAAAATTAAGCCTC 3759
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3760 AATAAACGTGATTATAAAAAACAAGTCTGCAAGGAAACCAGAATCATATACCTTCTCTTGTGAAATCACCATGA 3833
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3834 AGTGTGAATGGTCAGGAAAAAGCCAGTAATATTCATACATTTAATAATTTCAGCTCTACTGAATAAACATATAA 3907
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3908 GTCTGATGGGTGATGAAAATAGCTACTACAATCTTCATATTCTAACTCCTATAAAGACTGTATATCAGAATCTG 3981
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3982 CAAACTTTTATGCAGATCCCAGTGACTCAATTACATGTTCAACTATGATTAAAGCTTCAATAAACTTGGTTGTT 4055
Query 952 ----------- 951
Sbjct 4056 CATCTACTTCA 4066
