Construct: ORF ccsbBroadEn_11444

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001502.1_s300c1, BRDN0000386833
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NAALAD2 (10003)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10003 NAALAD2 N-acetylated alpha-linked a... XM_017017046.2 71.2% 70% (many diffs)
2 human 10003 NAALAD2 N-acetylated alpha-linked a... XR_001747711.2 52.1% (many diffs)
3 human 10003 NAALAD2 N-acetylated alpha-linked a... XR_001747707.2 44.8% (many diffs)
4 human 10003 NAALAD2 N-acetylated alpha-linked a... NM_001300930.2 43.5% 42.3% (many diffs)
5 human 10003 NAALAD2 N-acetylated alpha-linked a... XM_017017044.2 41.5% 40.4% (many diffs)
6 human 10003 NAALAD2 N-acetylated alpha-linked a... NM_005467.4 41.4% 40.5% (many diffs)
7 human 10003 NAALAD2 N-acetylated alpha-linked a... XM_017017043.2 39.5% 38.7% (many diffs)
8 human 10003 NAALAD2 N-acetylated alpha-linked a... XM_017017045.1 34.2% 33.2% (many diffs)
9 human 10003 NAALAD2 N-acetylated alpha-linked a... XR_001747710.2 25.7% (many diffs)
10 human 10003 NAALAD2 N-acetylated alpha-linked a... XR_001747709.2 25.7% (many diffs)
11 human 10003 NAALAD2 N-acetylated alpha-linked a... XR_001747708.2 22.6% (many diffs)
12 mouse 72560 Naalad2 N-acetylated alpha-linked a... NM_028279.3 36.4% 36.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1017
ORF length:
951
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GGAATCCAGG GGCCGTCTGT ACCTTTGGAT GTGCTTGGCT GCTGCGCTGG
121CATCTTTCCT GATGGGATTT ATGGTGGGCT GGTTTATTAA GCCTCTCAAA GAAACAACCA
181CTTCTGTGCG CTATCATCAA AGTATACGGT GGAAACTGGT ATCCGAAATG AAAGCTGAAA
241ACATCAAATC ATTTCTTCGT TCTTTTACAA AGCTTCCTCA TCTGGCAGGA ACAGAACAAA
301ATTTCTTGCT TGCCAAGAAA ATCCAAACCC AGTGGAAGAA ATTTGGACTA GATTCAGCCA
361AGTTGGTTCA TTATGATGTC CTCTTATCTT ACCCCAATGA GACAAATGCC AACTATATAT
421CGATTGTGGA TGAACATGAA ACTGAGATTT TCAAAACATC ATACCTTGAA CCACCACCAG
481ATGGCTATGA GAATGTTACA AATATTGTGC CACCATATAA TGCTTTCTCA GCCCAAGGCA
541TGCCAGAGGG AGATCTTGTA TATGTGAACT ATGCTCGCAC TGAAGACTTT TTCAAACTAG
601AAAGAGAGAT GGGCATCAAC TGTACTGGGA AGATTGTTAT TGCAAGATAT GGAAAAATCT
661TCAGAGGAAA TAAAGTTAAA AATGCCATGT TAGCAGGAGC CATAGGAATC ATCTTGTACT
721CAGATCCAGC TGACTACTTT GCTCCTGAGG TACAGCCATA TCCCAAAGGA TGGAATCTTC
781CTGGAACTGC AGCCCAGAGA GGAAATGTGT TAAATTTGAA TGGTGCTGGT GACCCACTCA
841CTCCAGGCTA TCCAGCAAAA GAATACACTT TCAGACTTGA TGTTGAAGAA GGAGTGGGAA
901TCCCCCGAAT ACCTGTACAT CCCATTGGAT ATAATGATGC AGAAATATTA TTACGGTATA
961GTTTTCTTGT TGGATATGAG ATTAAGATAT TTTGCACTAG TTGTCTATTT TCTCATTGCC
1021CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1081aac

Download FASTA (ORF) (Full)