Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11444
- Subject:
- XR_001747709.2
- Aligned Length:
- 3595
- Identities:
- 926
- Gaps:
- 2659
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCATAACCTGTTTGAAGGAACTTGAGCTTCAGGGTTACAAAACTGCTTCTGCTATGATGGAGAAGAGGAGGAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAATGCTTAGATAAGAGCAATTTAACTTAAATGGAGGAAGTGTGTCTATATTGACAAAAGTCCAAAGACTTGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGCCAGCTAACTGGGCTTTTTACAATGGCTTTTCAAGATTGCAGATGCCGCCTACAGAGACGACAGTCATATT 222
Query 1 --------------------------------------------------------ATGGCGGAATCCAGGGGC 18
||||||||||||||||||
Sbjct 223 TGAGCCCCGAAGCTCGCGAATGTAGCAGGCGCCCCAAGCTCGGTCCTCAAGAAGCCATGGCGGAATCCAGGGGC 296
Query 19 CGTCTGTACCTTTGGATGTGCTTGGCTGCTGCGCTGGCATCTTTCCTGATGGGATTTATGGTGGGCTGGTTTAT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGTCTGTACCTTTGGATGTGCTTGGCTGCTGCGCTGGCATCTTTCCTGATGGGATTTATGGTGGGCTGGTTTAT 370
Query 93 TAAGCCTCTCAAAGAAACAACCACTTCTGTGCGCTATCATCAAAGTATACGGTGGAAACTGGTATCCGAAATGA 166
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TAAGCCTCTCAAAGAAACGACCACTTCTGTGCGCTATCATCAAAGTATACGGTGGAAACTGGTATCCGAAATGA 444
Query 167 AAGCTGAAAACATCAAATCATTTCTTCGTTCTTTTACAAAGCTTCCTCATCTGGCAGGAACAGAACAAAATTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGCTGAAAACATCAAATCATTTCTTCGTTCTTTTACAAAGCTTCCTCATCTGGCAGGAACAGAACAAAATTTC 518
Query 241 TTGCTTGCCAAGAAAATCCAAACCCAGTGGAAGAAATTTGGACTAGATTCAGCCAAGTTGGTTCATTATGATGT 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTGCTTGCCAAGAAAATCCAAACCCAGTGGAAGAAATTTGGACTAGATTCAGCCAAGTTGGTTCATTATGATGT 592
Query 315 CCTCTTATCTTACCCCAATGAGACAAATGCCAACTATATATCGATTGTGGATGAACATGAAACTGAGATTTTCA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCTCTTATCTTACCCCAATGAGACAAATGCCAACTATATATCGATTGTGGATGAACATGAAACTGAGATTTTCA 666
Query 389 AAACATCATACCTTGAACCACCACCAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATATAATGCTTTC 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAACATCATACCTTGAACCACCACCAGATGGCTATGAGAATGTTACAAATATTGTGCCACCATATAATGCTTTC 740
Query 463 TCAGCCCAAGGCATGCCAGAGGGAGATCTTGTATATGTGAACTATGCTCGCACTGAAGACTTTTTCAAACTAGA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCAGCCCAAGGCATGCCAGAGGGAGATCTTGTATATGTGAACTATGCTCGCACTGAAGACTTTTTCAAACTAGA 814
Query 537 AAGAGAGATGGGCATCAACTGTACTGGGAAGATTGTTATTGCAAGATATGGAAAAATCTTCAGAGGAAATAAAG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAGAGATGGGCATCAACTGTACTGGGAAGATTGTTATTGCAAGATATGGAAAAATCTTCAGAGGAAATAAAG 888
Query 611 TTAAAAATGCCATGTTAGCAGGAGCCATAGGAATCATCTTGTACTCAGATCCAGCTGACTACTTTGCTCCTGAG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTAAAAATGCCATGTTAGCAGGAGCCATAGGAATCATCTTGTACTCAGATCCAGCTGACTACTTTGCTCCTGAG 962
Query 685 GTACAGCCATATCCCAAAGGATGGAATCTTCCTGGAACTGCAGCCCAGAGAGGAAATGTGTTAAATTTGAATGG 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GTACAGCCATATCCCAAAGGATGGAATCTTCCTGGAACTGCAGCCCAGAGAGGAAATGTGTTAAATTTGAATGG 1036
Query 759 TGCTGGTGACCCACTCACTCCAGGCTATCCAGCAAAAGAATACACTTTCAGACTTGATGTTGAAGAAGGAGTGG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGCTGGTGACCCACTCACTCCAGGCTATCCAGCAAAAGAATACACTTTCAGACTTGATGTTGAAGAAGGAGTGG 1110
Query 833 GAATCCCCCGAATACCTGTACATCCCATTGGATATAATGATGCAGAAATATTATTACGGTATAGTTTTCTTG-- 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|| ||||
Sbjct 1111 GAATCCCCCGAATACCTGTACATCCCATTGGATATAATGATGCAGAAATATTATTACGCTA-------CTTGGG 1177
Query 905 -----TTG--------GATATGAGAT------------------TAAGATATTTTGCACTAGT--------TGT 939
||| ||||.|||.| |.||.|| |||| ||.
Sbjct 1178 AGGAATTGCTCCACCAGATAAGAGTTGGAAGGGAGCCCTTAATGTGAGTTA--------TAGTATCGGACCTGG 1243
Query 940 CT------------ATTTTCTCAT-------------------------------------------------- 951
|| |||.|.|||.
Sbjct 1244 CTTTACAGGGAGTGATTCTTTCAGGAAGGTTAGAATGCATGTTTATAACATCAATAAAATTACAAGGATTTACA 1317
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1318 ATGTAGTTGGAACTATCAGAGGATCTGTGGAACCTGACAGGTATGTTATTCTGGGAGGTCACCGGGACTCCTGG 1391
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1392 GTATTTGGAGCTATTGACCCAACCAGTGGGGTTGCTGTTTTGCAAGAAATTGCCCGGAGTTTTGGAAAACTGAT 1465
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1466 GAGTAAAGGCTGGAGACCTAGAAGAACTATCATTTTTGCCAGCTGGGATGCAGAAGAATTTGGACTTCTGGGTT 1539
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1540 CCACAGAATGGGCTGAGGAGAATGTCAAAATACTCCAGGAGAGAAGCATTGCTTATATCAACTCGGATTCATCT 1613
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1614 ATAGAAGATCCCCAGCCCTGATGATGGGTTTGAGAGTAAATCACTGTATGAAAGCTGGTTGGAAAAAGACCCTT 1687
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1688 CACCTGAAAATAAAAATTTGCCTAGAATCAATAAGCTGGGATCTGGAAGTGACTTTGAAGCTTATTTTCAGAGA 1761
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1762 CTTGGAATTGCTTCAGGCAGAGCCCGTTACACTAAGAATAAGAAAACAGATAAGTACAGCAGCTACCCAGTGTA 1835
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1836 CCACACAATTTATGAGACATTTGAATTGGTAGAGAAATTTTATGACCCCACATTTAAAAAACAACTTTCTGTGG 1909
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1910 CTCAATTACGAGGAGCACTGGTATATGAGCTTGTGGATTCTAAAATCATTCCTTTTAATATTCAAGACTATGCA 1983
Query 952 -------------------------------------------------------------------------- 951
Sbjct 1984 GAAGCTTTGAAAAACTATGCAGCAAGTATCTATAATCTATCTAAGAAACATGATCAACAATTGACAGACCATGG 2057
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2058 AGTATCATTTGACTCCTTATTTTCTGCTGTGAAAAACTTCTCAGAGGCTGCTTCAGATTTTCATAAACGACTTA 2131
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2132 TACAAGTTGATCTTAACAATCCCATTGCAGTGAGAATGATGAATGACCAACTGATGCTCCTGGAAAGAGCATTC 2205
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2206 ATCGATCCTCTTGGTTTACCAGGAAAGCTGTTCTATAGGCACATCATATTTGCTCCAAGTAGCCACAACAAATA 2279
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2280 TGCTGGAGAATCATTTCCTGGAATCTATGATGCTATCTTTGATATTGAAAATAAAGCCAACTCTCGTTTGGCCT 2353
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2354 GGAAAGAAGTAAAGAAACATATTTCTATTGCAGCTTTTACAATTCAAGCAGCAGCAGGAACTCTGAAAGAAGTA 2427
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2428 TTATAGAAGGTCTCAAGTGGCTAGCCATTAAAGGTGTTGCTAAAAGTCTGAGGATAAAATTCACCTTTCTGATA 2501
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2502 ACTTATGAAGCCAGGGTGTTCTAAACTCTTTTCATGTCATGTTTTGATTATAGGCTTTGGTCTTTTCATCTGCA 2575
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2576 AAGCCTTTTTTTTTTGCTCTTTAAAAGTTAATAATTATATTAGCAAAGTGTTAATCTAATGAAGTAAAAAACTC 2649
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2650 CTGTGTGGCAGAAAGTAAAAGAAAATTCCCTAAATTATAGCAAGGAACATGAATTCTCAGACATTGTGAGTGTG 2723
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2724 GGAATGTAAAATGGTAAAATCACTTTTGAAAACAGTTTGGCAGTTTCCTATAAAGTTAAACATACACTTTTACT 2797
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2798 TTAGGACTCCAGAATTCCACTTCTAGTTATTTATTCAAGAGAAGGAAAAACAATGATCACAGCAATACTTGTAT 2871
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2872 GCATGTTCATTGCAACTTAAAAGCGTAAAAACCCCAAATGTCCATCCACAGACGAATGTATAAACTGTGGTATC 2945
Query 952 -------------------------------------------------------------------------- 951
Sbjct 2946 CATTACACAATAGACTACTTACTACTCAGCAATAAAAATGAAGTAACTTTCAATAAATGCAATATTATTGGCAG 3019
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3020 ACATTGTTGAAGGAAAAAAGCCAGACAAACAACTACATAAAATATGTTTCTATTTAGATGAAGTGGCAAACTAA 3093
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3094 TCTGTAGTGTTAAAAATTAGATTAGTGATTGCCTGGGCCAAGTGGCAGGTTGGGGAGGATGGCTGCAAAGAAGT 3167
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3168 ATGAGGAAACTTTCTCCAATAGATGAGAATTTTCCGTATCTTGATCTGAGTGGCAAATTGTAAACTTAAAATAT 3241
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3242 ATATAAAATTTATTGTATGAAAATTAAGCCTCAATAAACGTGATTATAAAAAACAAGTCTGCAAGGAAACCAGA 3315
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3316 ATCATATACCTTCTCTTGTGAAATCACCATGAAGTGTGAATGGTCAGGAAAAAGCCAGTAATATTCATACATTT 3389
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3390 AATAATTTCAGCTCTACTGAATAAACATATAAGTCTGATGGGTGATGAAAATAGCTACTACAATCTTCATATTC 3463
Query 952 -------------------------------------------------------------------------- 951
Sbjct 3464 TAACTCCTATAAAGACTGTATATCAGAATCTGCAAACTTTTATGCAGATCCCAGTGACTCAATTACATGTTCAA 3537
Query 952 ------------------------------------------- 951
Sbjct 3538 CTATGATTAAAGCTTCAATAAACTTGGTTGTTCATCTACTTCA 3580
