Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11450
- Subject:
- XR_925996.1
- Aligned Length:
- 2304
- Identities:
- 1266
- Gaps:
- 997
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAAAGAGCTTAGAATATTTATTTGAAAGGAATGAGGATCCTGCACTCTTCCTCCCTCAGTAAGTAAATGCCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCCTAGGAAGAGAGAACCAAAATGTCTACCGGACCAGATGTCAAGGCTACAGTGGGGGACATTTCCAGTGATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCAATTTAAACGTGGCTCAAGAGGAATGCTCCAGGAAAGGTTTTTGTTCAGTCCGACATGGGCTGGCCCTCATC 222
Query 1 ------------------------------------ATGAACTTGAGCATTGCCATCCCAGCTATGGTGAACAA 38
||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTGCAGCTCTGTAATTTTTCAATTTACACCCAACAAATGAACTTGAGCATTGCCATCCCAGCTATGGTGAACAA 296
Query 39 CACAGCCCCACCTAGCCAGCCCAATGCCTCCACAGAACGGCCCTCCACTGACTCCCAGGGCTACTGGAATGAAA 112
|||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CACAGCCCCACCTAGCCAGCCCAATGCTTCCACAGAACGGCCCTCCACTGACTCCCAGGGCTACTGGAATGAAA 370
Query 113 CTCTAAAAGAATTTAAAGCAATGGCCCCTGCATATGACTGGAGTCCTGAAATCCAGGGAATCATCCTCAGCTCC 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCTAAAAGAATTTAAAGCAATGGCCCCTGCATATGACTGGAGTCCTGAAATCCAGGGAATCATCCTCAGCTCC 444
Query 187 CTCAACTATGGCTCATTCTTGGCTCCAATCCCCAGTGGCTATGTGGCTGGAATATTTGGAGCCAAGTATGTGGT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTCAACTATGGCTCATTCTTGGCTCCAATCCCCAGTGGCTATGTGGCTGGAATATTTGGAGCCAAGTATGTGGT 518
Query 261 TGGTGCTGGCTTGTTTATTTCCTCATTCCTGACCCTCTTCATTCCACTGGCAGCTAATGCGGGAGTGGCCTTGC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGGTGCTGGCTTGTTTATTTCCTCATTCCTGACCCTCTTCATTCCACTGGCAGCTAATGCGGGAGTGGCCTTGC 592
Query 335 TCATTGTCCTCCGGATTGTACAAGGCATAGCCCAGGTTATGGTATTAACTGGTCAGTATTCAATTTGGGTCAAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCATTGTCCTCCGGATTGTACAAGGCATAGCCCAGGTTATGGTATTAACTGGTCAGTATTCAATTTGGGTCAAA 666
Query 409 TGGGCTCCCCCACTGGAAAGGAGTCAACTCACCACCATTGCTGGATCAGGGTCAATGCTGGGGTCCTTCATTGT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGGCTCCCCCACTGGAAAGGAGTCAACTCACCACCATTGCTGGATCAGGGTCAATGCTGGGGTCCTTCATTGT 740
Query 483 TCTACTTGCTGGTGGTCTCCTCTGCCAGACCATAGGATGGCCTTACGTCTTCTATATCTTTGGAGGAATTGGCT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCTACTTGCTGGTGGTCTCCTCTGCCAGACCATAGGATGGCCTTACGTCTTCTATATCTTTGGAGGAATTGGCT 814
Query 557 GTGCTTGTTGTCCTCTCTGGTTTCCTCTCATTTATGATGATCCTGTGAATCATCCCTTTATCAGTGCTGGTGAG 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTGCTTGTTGTCCTCTCTGGTTTCCTCTCATTTATGATGATCCTGTGAATCATCCCTTTATCAGTGCTGGTGAG 888
Query 631 AAGAGATACATTGTGTGTTCATTGGCTCAGCAGGACTGTTCACCAGGCTGGTCTCTTCCCATTAGGGCTATGAT 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGAGATACATTGTGTGTTCATTGGCTCAGCAGGACTGTTCACCAGGCTGGTCTCTTCCCATTAGGGCTATGAT 962
Query 705 CAAATCCTTACCACTCTGGGCCATTTTAGTCTCTTATTTCTGTGAATACTGGCTTTTTTATACCATTATGGCGT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAAATCCTTACCACTCTGGGCCATTTTAGTCTCTTATTTCTGTGAATACTGGCTTTTTTATACCATTATGGCGT 1036
Query 779 ACACACCAACGTACATCAGCTCGGTACTTCAAGCCAACCTCAGAGATAGTGGGATCCTGTCTGCCTTGCCGTTT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACACACCAACGTACATCAGCTCGGTACTTCAAGCCAACCTCAGAGATAGTGGGATCCTGTCTGCCTTGCCGTTT 1110
Query 853 GTTGTTGGATGTATCTGCATTATCCTTGGAGGTCTACTGGCAGACTTTCTTCTCTCCAGAAAAATCCTCAGACT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTGTTGGATGTATCTGCATTATCCTTGGAGGTCTACTGGCAGACTTTCTTCTCTCCAGAAAAATCCTCAGACT 1184
Query 927 CATCACCATCAGGAAACTCTTCACTACCATTGGGGTTCTCTTCCCATCCGTGATCCTCGTGTCCCTGCCCTGGG 1000
|||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATCACCATCAGGAAACTCTTCACTGCCATTGGGGTTCTCTTCCCATCCGTGATCCTCGTGTCCCTGCCCTGGG 1258
Query 1001 TCAGATCCAGCCACAGCATGACCATGACCTTCTTGGTGCTGTCTTCTGCCATCAGCAGCTTCTGTGAATCAGGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAGATCCAGCCACAGCATGACCATGACCTTCTTGGTGCTGTCTTCTGCCATCAGCAGCTTCTGTGAATCAGGA 1332
Query 1075 GCCCTTGTTAACTTCTTGGATATTGCTCCTCGGTACACTGG-----CTTT---CTCA-------AAGGACT--A 1131
||||||||||||||||||||||||||||||||||| || |||| |||| |...||| |
Sbjct 1333 GCCCTTGTTAACTTCTTGGATATTGCTCCTCGGTA----GGGACCTCTTTTGCCTCATCCTTTCAGACACTCAA 1402
Query 1132 TTGCAAGTCT-------------------------------------TTGC-------ACACATAGCTGGA--- 1158
|| ||||||| |.|| |||..|.||.|||
Sbjct 1403 TT-CAAGTCTAGCAGCCCTAAATCTACTCTGATGTGAAAGTAAAATGTGGCAGGTACAACAGGTTGCAGGAAAT 1475
Query 1159 ------GCCATCTC----TCCTAC----------------------------TGCTGCTGGA------------ 1182
.|||.||| |||||| .||||.||||
Sbjct 1476 GTCAGCACCAGCTCTACATCCTACATCTAAATAATTCCTGGAAGAGACTCAAAGCTGGTGGACCATTGTGAACT 1549
Query 1183 ---TTTTTC--------------ATCAGTCAG----GAT--TCAGAGT-------------------------- 1207
|||||| |..|||||| .|| |||||||
Sbjct 1550 TAGTTTTTCTGGGCGTGAACAAGAGGAGTCAGTGGCCATGCTCAGAGTCAACTGAGGGAGACTCACACAAACCT 1623
Query 1208 ---TTGGTTGGAGAAATGTC--TTCTTGCTT---------TCAGCTG------CTGTTAACA---TATCGGGCC 1258
|..||| |||.|||| | ..|||||.| ||| ||| .|.||.|.| |||.|||..
Sbjct 1624 CTCTCTGTT-GAGGAATG-CAGCACTTGCCTAAGGCGGAATCA-CTGAAAGAAATCTTGAGATTCTATAGGGTA 1694
Query 1259 TGGTTTTCTACCTC------ATCTTT------GGCCGAGCAGATGTGCAGGACTG--GGCTAAAGAGC------ 1312
|| ||| |||||| |||..||.|.| |||||||| ||..|||.|.|
Sbjct 1695 TG---------CTCATGAAAATCTTTAATGAAGGCAAAGGACA----CAGGACTGCAGGAGAAATATCTGTCTC 1755
Query 1313 ------------------------AGACATTC---ACCCACCTC------------------------------ 1329
|||| ||| ||..|.|||
Sbjct 1756 TGATACAGTAAAAACAGTTGACTGAGAC-TTCCAAACATAGCTCCCAGGGTGCTGTCCCAGTCAACAGGACATC 1828
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 1829 CTTCATCTTCAGATAATGAACCACCAAGAAATGTGAGAGATGCCCTTGTCACAGGGGAGCCGACGTCTCATCTG 1902
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 1903 GTGAGGGGTCTTTTATACCCACGGAGGGTATAAAAGTTACAAGATCAGACTCAACAGCAGAAGCCAAAACAACA 1976
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 1977 ACAACAACAACAACAACAACAACAACAACAACAACAAAAACCTTACAAACCAGGTGCAGACCATCAATCTGACC 2050
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 2051 ATCTTGCATAAACAATGTTGACAAGTTAATAGAGGTTACCCCCTTGGGAGTACCAGTCCCTAGCACAGGATTAT 2124
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 2125 ACTAATCATTGGTCAGTACATTTCATTCAGGTTTCACCAAGGCTTACACAATTCCAGTCATCTCCAGAGGTACA 2198
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 2199 CTGGCTTTCTCAAAGGACTATTGCAAGTCTTTGCACACATAGCTGGAGCCATCTCTCCTACTGCTGCTGGATTT 2272
Query 1330 ---------- 1329
Sbjct 2273 TTCATCAGTC 2282
