Construct: ORF ccsbBroadEn_11450
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014855.1_s300c1, BRDN0000387902
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC17A4 (10050)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10050 | SLC17A4 | solute carrier family 17 me... | NM_001286121.1 | 99.8% | 99.7% | 66T>C;952G>A |
| 2 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514211.1 | 99.8% | 99.7% | 66T>C;952G>A |
| 3 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_024446297.1 | 99.8% | 99.7% | 66T>C;952G>A |
| 4 | human | 10050 | SLC17A4 | solute carrier family 17 me... | NM_005495.3 | 89% | 88.9% | 1_162del;228T>C;1114G>A |
| 5 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_024446294.1 | 89% | 88.9% | 1_162del;228T>C;1114G>A |
| 6 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_024446295.1 | 89% | 88.9% | 1_162del;228T>C;1114G>A |
| 7 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_024446296.1 | 89% | 88.9% | 1_162del;228T>C;1114G>A |
| 8 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514213.2 | 73.3% | 73.2% | (many diffs) |
| 9 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_017010150.1 | 67% | 64.9% | (many diffs) |
| 10 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514218.2 | 65.1% | 65% | 0_1ins462;490G>A |
| 11 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514214.2 | 64.5% | 53.5% | (many diffs) |
| 12 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XR_925997.1 | 59.1% | (many diffs) | |
| 13 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514215.2 | 55.8% | 55.3% | (many diffs) |
| 14 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XR_925996.1 | 54.9% | (many diffs) | |
| 15 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514217.2 | 53.5% | 53.5% | (many diffs) |
| 16 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XR_925998.1 | 51.6% | (many diffs) | |
| 17 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_011514219.2 | 42.7% | 42.6% | (many diffs) |
| 18 | human | 10050 | SLC17A4 | solute carrier family 17 me... | XM_017010151.1 | 37.6% | 36.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1398
- ORF length:
- 1329
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAACTTGAGC ATTGCCATCC CAGCTATGGT GAACAACACA GCCCCACCTA 121 GCCAGCCCAA TGCCTCCACA GAACGGCCCT CCACTGACTC CCAGGGCTAC TGGAATGAAA 181 CTCTAAAAGA ATTTAAAGCA ATGGCCCCTG CATATGACTG GAGTCCTGAA ATCCAGGGAA 241 TCATCCTCAG CTCCCTCAAC TATGGCTCAT TCTTGGCTCC AATCCCCAGT GGCTATGTGG 301 CTGGAATATT TGGAGCCAAG TATGTGGTTG GTGCTGGCTT GTTTATTTCC TCATTCCTGA 361 CCCTCTTCAT TCCACTGGCA GCTAATGCGG GAGTGGCCTT GCTCATTGTC CTCCGGATTG 421 TACAAGGCAT AGCCCAGGTT ATGGTATTAA CTGGTCAGTA TTCAATTTGG GTCAAATGGG 481 CTCCCCCACT GGAAAGGAGT CAACTCACCA CCATTGCTGG ATCAGGGTCA ATGCTGGGGT 541 CCTTCATTGT TCTACTTGCT GGTGGTCTCC TCTGCCAGAC CATAGGATGG CCTTACGTCT 601 TCTATATCTT TGGAGGAATT GGCTGTGCTT GTTGTCCTCT CTGGTTTCCT CTCATTTATG 661 ATGATCCTGT GAATCATCCC TTTATCAGTG CTGGTGAGAA GAGATACATT GTGTGTTCAT 721 TGGCTCAGCA GGACTGTTCA CCAGGCTGGT CTCTTCCCAT TAGGGCTATG ATCAAATCCT 781 TACCACTCTG GGCCATTTTA GTCTCTTATT TCTGTGAATA CTGGCTTTTT TATACCATTA 841 TGGCGTACAC ACCAACGTAC ATCAGCTCGG TACTTCAAGC CAACCTCAGA GATAGTGGGA 901 TCCTGTCTGC CTTGCCGTTT GTTGTTGGAT GTATCTGCAT TATCCTTGGA GGTCTACTGG 961 CAGACTTTCT TCTCTCCAGA AAAATCCTCA GACTCATCAC CATCAGGAAA CTCTTCACTA 1021 CCATTGGGGT TCTCTTCCCA TCCGTGATCC TCGTGTCCCT GCCCTGGGTC AGATCCAGCC 1081 ACAGCATGAC CATGACCTTC TTGGTGCTGT CTTCTGCCAT CAGCAGCTTC TGTGAATCAG 1141 GAGCCCTTGT TAACTTCTTG GATATTGCTC CTCGGTACAC TGGCTTTCTC AAAGGACTAT 1201 TGCAAGTCTT TGCACACATA GCTGGAGCCA TCTCTCCTAC TGCTGCTGGA TTTTTCATCA 1261 GTCAGGATTC AGAGTTTGGT TGGAGAAATG TCTTCTTGCT TTCAGCTGCT GTTAACATAT 1321 CGGGCCTGGT TTTCTACCTC ATCTTTGGCC GAGCAGATGT GCAGGACTGG GCTAAAGAGC 1381 AGACATTCAC CCACCTCTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1441 gcttatcaat ttgttgcaac gaac