Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_11459
• Subject: XR_002958238.1
• Aligned Length: 4292
• Identities: 2963
• Gaps: 1328

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTCATTTGCATGTCCCCGCCTCGCGCGGCGGCGGCGGCGGGTGAGGAGCCTGAGGCGGCGGCGGGGGTGGCTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGCGCGGTGGTCTCGGGGGCAAAATAACATGGCAGCCAGACGAATTACACAGGAGACTTTTGATGCTGTATTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAAGAAAAAGCCAAACGATATCACATGGATGCCAGTGGTGAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCA  222

Query    1  -------------------------------------ATGTATGATGACGTCCACAGCGATGGCAGATACTCCC  37
                                                 |||||||||||||||||||||||||||||||||||||
Sbjct  223  AGATCTCTTAAGGGCAGTCCCAAGATCCAGAGCAGAGATGTATGATGACGTCCACAGCGATGGCAGATACTCCC  296

Query   38  TCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCC  111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAGAAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCC  370

Query  112  TTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTC  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTACTTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTC  444

Query  186  TCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTG  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAAATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTG  518

Query  260  CGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGT  333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAGTTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGT  592

Query  334  TTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAG  407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCCAGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAG  666

Query  408  TCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCAGCAGTCAAGTCCAGGCCAGAG  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  667  TCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTCTGTGCTTAGGGGCGGCAGTCAAGTCCAGGCCAGAG  740

Query  482  GTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCT  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCCTAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCT  814

Query  556  AAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTAC  629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTGAGCACAAAAAAAATACCCACCGTGAATCGTATTAC  888

Query  630  TCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAG  703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACACTCCAAGTCCTGATGTGACCCTGGGGACAAACCCAG  962

Query  704  GGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGA  777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTCTGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGA  1036

Query  778  AGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGC  851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTTTTTTCAAGATTTGGGATAGAAATAATCAAATGGGC  1110

Query  852  AGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAA  925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGGATTCCACACCATAAAAGATGATATTAAATTTTCCCAACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAA  1184

Query  926  CCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATC  999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAAAACCAGAGCACAGAGATTTTTGCTTTTTTACTATC  1258

Query 1000  AAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGG  1073
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTTGATAATGAGTTTTTAAACATGCTTTTAGACAAAGG  1332

Query 1074  TGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACC  1147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAAGCCTTTTGACAAGTACATAATGAGACTTCAAGACC  1406

Query 1148  GGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTC  1221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCAATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTC  1480

Query 1222  AGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGG  1295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACCAACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGG  1554

Query 1296  ACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTC  1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAAAATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTC  1628

Query 1370  CCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCC  1443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTTTGTTTGGGCGAGAGTACATAGACCACCTGAAGGCC  1702

Query 1444  TGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAAT  1517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAAGCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAAT  1776

Query 1518  GATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAG  1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCCAAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAG  1850

Query 1592  ATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGA  1665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAACGTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGA  1924

Query 1666  ACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCT  1739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  ACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCTGATGAAAATAGTCTGGAGTATAAATATTACAAGCT  1998

Query 1740  GAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTG  1813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCGAGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTG  2072

Query 1814  CAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGG  1887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACCTCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGG  2146

Query 1888  CTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTC  1961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  CTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGGAGAGCGACCACCGGGACCCAGACCCTCCTATCCTC  2220

Query 1962  AGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAA  2035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGGCCTCTCACAGGCAAAACCATCCCTGCCAGACAGAA  2294

Query 2036  ATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGC  2109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGACCTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGC  2368

Query 2110  CCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACAT  2183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCACCTCAGACCTCTTCTCCCTGCCCATCTGCTGACAT  2442

Query 2184  TGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAAT  2257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  TGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAGATTTGTTGCTCAGGTGGGACCAGAGATCGAACAAT  2516

Query 2258  TCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTC  2331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGTTTCTACATGACCAAAATAGTTCTGCTTTCAAATTC  2590

Query 2332  TATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGG  2405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  TATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGTTTCACGTCATCTCCGCACAACCTTCACACTGGTGG  2664

Query 2406  TGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCC  2479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  TGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCTCATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCC  2738

Query 2480  CTCCGCGGGAGGCTGAGCTGGAGAGCCCAG--------------------------------------------  2509
            ||||||||||||||||||||||||||||||                                            
Sbjct 2739  CTCCGCGGGAGGCTGAGCTGGAGAGCCCAGAGGTGATGCCTGAGGAGGAGGACGAGGACGATGAGGATGGGGGA  2812

Query 2510  --------------------------------------------------------------------------  2509
                                                                                      
Sbjct 2813  GAGGAGGCCCCCGCTCCTGGAGGGGCGGGCAAGTCTGAGGGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGC  2886

Query 2510  --------------------------------------AGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGA  2545
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct 2887  TGCCGAGGACGACCTGGCTGGAGCACCTGCCTTGTCACAGGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGA  2960

Query 2546  TCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAA----  2615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 2961  TCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTCCCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGAG  3034

Query 2616  --------------------------------------------------------------------------  2615
                                                                                      
Sbjct 3035  GCGAGAACCCACCAGTACAGCAGAGCTGAAGCCTGTTCCCAGAACGGGTCTCTTGTCCCATTGCAGTCCCCTGC  3108

Query 2616  -----------------------------------AGTCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCG  2654
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct 3109  CCGATTCAGCAACCACTGACTGTTTTCCAAGCCCCAGTCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCG  3182

Query 2655  GGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACC  2728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  GGGTCGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACC  3256

Query 2729  TGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGG  2802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  TGGGCTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGG  3330

Query 2803  GAGCCGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCC  2876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  GAGCCGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCC  3404

Query 2877  TGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATC  2950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  TGCCGCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATC  3478

Query 2951  TTCAGATGAGAAGC------------------------------------------------------------  2964
            ||||||||||||||                                                            
Sbjct 3479  TTCAGATGAGAAGCTGATCATTTACATGTGCAGGTGTTTACAGGGCTCCTTTCTGTCCTGGTGTAGATTTTTTA  3552

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3553  ACCAGCTTGTTGGCCCTGGTCATTTTGGCCACATTTGTGACCATCATAAAAGCTAAGTGGTATTTCTGTGTAGT  3626

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3627  TTCCGTCTGGAACTGCTTTCCCATTCCCGGGAACCCATAGCCGGGCCAGCCAGGGTCCCGAACACAGGCCCAAA  3700

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3701  GTTTATTAAACCCCGATCATAACCTCCAGCAGGCATTTCATTTAATACTGAGCTTAGTTCCTGCTGGGTAAGGC  3774

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3775  ATTCCGAGGTAACCAGGGCCCTCTGGGCACCCCCTCAAAAGCCAGCTCTTCGAGGGTGAGTACTCCTTGTTTCT  3848

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3849  ACTGTGAGTCGCGTCTTGATTTTCCCTTTCTTTGATGTCTCAGTGTGTGTCCCAAACACCTGCATCTCATGGAC  3922

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3923  TGTTTGTGCCCATGCCCAGTTCCTGGCATGCCAGGCCCTGGGCTCAGGTGCACAACTGACTCTCTTTTTCACTC  3996

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 3997  CCTAGGGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGCTGACGGGCAGGAGCACAAAGAAGACACATTCGATGT  4070

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4071  GTTCCGACAGAGGATGATGCAGATGTACAGACACAAGCGGGCCAACAAATAGTTCCAGGGTCACCCCCGAGAGG  4144

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4145  ACAACAGGCATCTGGAAGTGCTCTCTCGCCACTCTGGGTGCTTTACTGTCTCTGGCTTGTTTCCATCACTGGAA  4218

Query 2965  --------------------------------------------------------------------------  2964
                                                                                      
Sbjct 4219  ATCACTTAGAGAATTGTAGTGTTTTTGGTCCTTGATAAAGCCTAGAAGACATTTGTGATGTTACAAAATGGAAG  4292