Construct: ORF ccsbBroadEn_11459

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008962.1_s300c1, BRDN0000457317
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SUGP2 (10147)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10147 SUGP2 SURP and G-patch domain con... XM_024451307.1 89.3% 89.2% 1_198del;658G>A;2708_2863del
2 human 10147 SUGP2 SURP and G-patch domain con... NM_001017392.5 87.5% 85.7% (many diffs)
3 human 10147 SUGP2 SURP and G-patch domain con... NM_001321697.2 87.5% 85.7% (many diffs)
4 human 10147 SUGP2 SURP and G-patch domain con... NM_001352071.2 87.5% 85.7% (many diffs)
5 human 10147 SUGP2 SURP and G-patch domain con... NM_014884.5 87.5% 85.7% (many diffs)
6 human 10147 SUGP2 SURP and G-patch domain con... NM_001321698.1 86.4% 84.7% (many diffs)
7 human 10147 SUGP2 SURP and G-patch domain con... NM_001321699.1 86.4% 84.7% (many diffs)
8 human 10147 SUGP2 SURP and G-patch domain con... XM_024451308.1 86.4% 84.7% (many diffs)
9 human 10147 SUGP2 SURP and G-patch domain con... XR_936144.3 80.1% (many diffs)
10 human 10147 SUGP2 SURP and G-patch domain con... XR_430124.4 79.9% (many diffs)
11 human 10147 SUGP2 SURP and G-patch domain con... XR_430122.4 79.6% (many diffs)
12 human 10147 SUGP2 SURP and G-patch domain con... NR_147914.2 79% (many diffs)
13 human 10147 SUGP2 SURP and G-patch domain con... XR_936143.3 78.3% (many diffs)
14 human 10147 SUGP2 SURP and G-patch domain con... XR_001753580.2 77.5% (many diffs)
15 human 10147 SUGP2 SURP and G-patch domain con... XR_001753576.2 74.9% (many diffs)
16 human 10147 SUGP2 SURP and G-patch domain con... XR_002958236.1 74.8% (many diffs)
17 human 10147 SUGP2 SURP and G-patch domain con... XR_002958237.1 70.8% (many diffs)
18 human 10147 SUGP2 SURP and G-patch domain con... XR_001753575.2 70.1% (many diffs)
19 human 10147 SUGP2 SURP and G-patch domain con... XR_002958238.1 69% (many diffs)
20 human 10147 SUGP2 SURP and G-patch domain con... XR_430120.4 68.6% (many diffs)
21 human 10147 SUGP2 SURP and G-patch domain con... XR_936140.3 68.4% (many diffs)
22 human 10147 SUGP2 SURP and G-patch domain con... NR_147913.2 67.9% (many diffs)
23 human 10147 SUGP2 SURP and G-patch domain con... XR_002958239.1 66.5% (many diffs)
24 human 10147 SUGP2 SURP and G-patch domain con... XR_001753574.2 62.9% (many diffs)
25 human 10147 SUGP2 SURP and G-patch domain con... XR_936141.3 62.8% (many diffs)
26 human 10147 SUGP2 SURP and G-patch domain con... XR_002958235.1 62.7% (many diffs)
27 human 10147 SUGP2 SURP and G-patch domain con... XR_001753573.2 60.3% (many diffs)
28 human 10147 SUGP2 SURP and G-patch domain con... XR_936139.3 60.2% (many diffs)
29 human 10147 SUGP2 SURP and G-patch domain con... NR_147915.2 46.3% (many diffs)
30 human 10147 SUGP2 SURP and G-patch domain con... XR_936138.3 44.7% (many diffs)
31 human 10147 SUGP2 SURP and G-patch domain con... XR_936137.3 43.4% (many diffs)
32 human 10147 SUGP2 SURP and G-patch domain con... XR_936142.2 43.1% (many diffs)
33 human 10147 SUGP2 SURP and G-patch domain con... XR_001753577.2 42% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3030
ORF length:
2964
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA TGATGACGTC CACAGCGATG GCAGATACTC CCTCAGTGGA TCTGTAGCTC
121ACTCTAGAGA TGCCGGAAGA GAAGGCCTGA GAAGTGACGT ATTTCCAGGG CCTTCCTTCA
181GATCAAGCAA CCCTTCCATC AGTGATGACA GCTACTTTCG CAAAGAATGT GGCCGGGATC
241TGGAATTTTC TCACTCTGAT TCTCGGGACC AGGTCATTGG CCACCGGAAA TTGGGGCATT
301TCCGTTCTCA GGACTGGAAA TTTGCGCTCC GTGGTTCTTG GGAACAAGAC TTTGGCCATC
361CAGTTTCTCA AGAGTCCTCT TGGTCACAGG AGTATAGTTT TGGTCCCTCT GCAGTTTTGG
421GGGACTTTGG ATCTTCCAGG CTGATTGAGA AAGAGTGTTT GGAGAAGGAG AGTCGGGATT
481ATGACGTGGA CCATCCTGGG GAGGCTGACT CTGTGCTTAG GGGCAGCAGT CAAGTCCAGG
541CCAGAGGTCG AGCTCTAAAC ATCGTTGACC AGGAAGGTTC CCTCCTAGGA AAGGGGGAGA
601CTCAGGGCCT GCTCACAGCT AAGGGGGGTG TTGGGAAACT TGTCACATTG AGAAATGTGA
661GCACAAAAAA AATACCCACC GTGAATCGTA TTACTCCCAA AACTCAGGGC ACTAACCAAA
721TCCAGAAAAA CACTCCAAGT CCTGATGTGA CCCTGGGGAC AAACCCAGGG ACAGAAGATA
781TCCAGTTCCC CATTCAGAAG ATCCCTCTGG GGCTGGATCT GAAGAATCTT CGGCTCCCCA
841GAAGAAAGAT GAGCTTTGAC ATCATAGATA AGTCTGATGT TTTTTCAAGA TTTGGGATAG
901AAATAATCAA ATGGGCAGGA TTCCACACCA TAAAAGATGA TATTAAATTT TCCCAACTTT
961TCCAGACTCT CTTTGAACTT GAAACAGAAA CCTGTGCTAA AATGCTTGCC TCATTCAAAT
1021GTTCCTTAAA ACCAGAGCAC AGAGATTTTT GCTTTTTTAC TATCAAATTT TTAAAGCACT
1081CTGCTTTGAA AACACCCAGA GTTGATAATG AGTTTTTAAA CATGCTTTTA GACAAAGGTG
1141CTGTGAAGAC CAAAAATTGC TTTTTTGAAA TCATAAAGCC TTTTGACAAG TACATAATGA
1201GACTTCAAGA CCGGCTTCTG AAGAGTGTCA CACCTTTGCT TATGGCCTGC AATGCCTACG
1261AGCTAAGTGT CAAGATGAAG ACCCTCAGTA ACCCCCTGGA CTTGGCTCTT GCCCTAGAAA
1321CCACCAACTC TCTCTGCCGG AAGTCTTTGG CCCTTTTGGG ACAGACATTT TCCTTGGCCT
1381CTTCTTTCCG GCAGGAGAAA ATCTTAGAAG CTGTCGGCCT GCAAGATATA GCTCCCTCAC
1441CTGCTGCGTT TCCAAACTTC GAAGACTCCA CTTTGTTTGG GCGAGAGTAC ATAGACCACC
1501TGAAGGCCTG GCTAGTCAGC AGCGGATGTC CCCTCCAGGT TAAGAAAGCC GAACCAGAGC
1561CGATGCGAGA GGAGGAGAAA ATGATTCCTC CTACGAAACC TGAAATTCAG GCCAAGGCTC
1621CAAGTAGTCT GAGTGATGCT GTCCCCCAGC GAGCAGATCA CAGGGTAGTG GGCACCATCG
1681ACCAGCTTGT GAAACGTGTC ATCGAAGGCA GCCTGTCTCC CAAAGAGAGA ACTCTTCTCA
1741AAGAGGACCC TGCTTACTGG TTTTTGTCTG ATGAAAATAG TCTGGAGTAT AAATATTACA
1801AGCTGAAGTT GGCAGAAATG CAGCGGATGA GCGAGAACTT GCGAGGAGCC GACCAGAAGC
1861CGACCTCAGC AGACTGTGCA GTGAGGGCCA TGCTGTACTC CCGGGCTGTC CGCAACCTCA
1921AGAAGAAACT CCTTCCGTGG CAGCGGCGGG GGCTCCTCCG TGCTCAAGGG CTCCGGGGCT
1981GGAAGGCGAG GAGAGCGACC ACCGGGACCC AGACCCTCCT ATCCTCAGGC ACCAGGCTGA
2041AACACCACGG CCGGCAGGCT CCAGGCCTCT CACAGGCAAA ACCATCCCTG CCAGACAGAA
2101ATGATGCTGC CAAGGACTGC CCGCCAGACC CAGTTGGACC TTCTCCTCAG GACCCCAGCT
2161TAGAAGCCTC AGGCCCATCC CCCAAGCCAG CAGGAGTGGA CATCTCTGAA GCACCTCAGA
2221CCTCTTCTCC CTGCCCATCT GCTGACATTG ACATGAAGAC AATGGAGACT GCAGAGAAAC
2281TGGCTAGATT TGTTGCTCAG GTGGGACCAG AGATCGAACA ATTCAGCATA GAAAACAGCA
2341CCGATAACCC TGACCTGTGG TTTCTACATG ACCAAAATAG TTCTGCTTTC AAATTCTATC
2401GAAAGAAAGT GTTTGAACTA TGTCCATCAA TTTGTTTCAC GTCATCTCCG CACAACCTTC
2461ACACTGGTGG TGGTGACACC ACGGGTTCTC AGGAGAGCCC CGTGGACCTC ATGGAAGGGG
2521AAGCAGAGTT TGAAGACGAG CCCCCTCCGC GGGAGGCTGA GCTGGAGAGC CCAGAGGCCT
2581CCTCAGGTAC CTGCTTCCCT CGGAAGAGGA TCAGCAGCAA GTCATTGAAG GTTGGCATGA
2641TTCCAGCTCC CAAGAGAGTG TGTCTCATCC AGGAGCCAAA AGTCCATGAA CCAGTTCGAA
2701TTGCCTATGA CAGGCCTCGG GGTCGTCCCA TGTCCAAAAA GAAGAAACCC AAGGACTTGG
2761ACTTCGCCCA GCAGAAGCTG ACCGATAAGA ACCTGGGCTT CCAGATGCTG CAGAAGATGG
2821GCTGGAAGGA GGGCCATGGC CTGGGCTCCC TCGGAAAGGG CATCAGGGAG CCGGTCAGCG
2881TGTACGCAGC AGGCAGCCTG GGGTGGGAGT GGGTGGGGCC TCAGTCCTTC CACCTGCAGC
2941CTGCCGCTTG GCTCCTTCAC AGCCAAGATG GCTTACAGCT GGCAGTTGAT TTTTGTTTTT
3001TAAACAGAAG GCATCTTCAG ATGAGAAGCT GCCCAACTTT CTTGTACAAA GTTGGcatta
3061taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)