Construct: ORF ccsbBroadEn_11459
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008962.1_s300c1, BRDN0000457317
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUGP2 (10147)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XM_024451307.1 | 89.3% | 89.2% | 1_198del;658G>A;2708_2863del |
| 2 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NM_001017392.5 | 87.5% | 85.7% | (many diffs) |
| 3 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NM_001321697.2 | 87.5% | 85.7% | (many diffs) |
| 4 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NM_001352071.2 | 87.5% | 85.7% | (many diffs) |
| 5 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NM_014884.5 | 87.5% | 85.7% | (many diffs) |
| 6 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NM_001321698.1 | 86.4% | 84.7% | (many diffs) |
| 7 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NM_001321699.1 | 86.4% | 84.7% | (many diffs) |
| 8 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XM_024451308.1 | 86.4% | 84.7% | (many diffs) |
| 9 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936144.3 | 80.1% | (many diffs) | |
| 10 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_430124.4 | 79.9% | (many diffs) | |
| 11 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_430122.4 | 79.6% | (many diffs) | |
| 12 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NR_147914.2 | 79% | (many diffs) | |
| 13 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936143.3 | 78.3% | (many diffs) | |
| 14 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_001753580.2 | 77.5% | (many diffs) | |
| 15 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_001753576.2 | 74.9% | (many diffs) | |
| 16 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_002958236.1 | 74.8% | (many diffs) | |
| 17 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_002958237.1 | 70.8% | (many diffs) | |
| 18 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_001753575.2 | 70.1% | (many diffs) | |
| 19 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_002958238.1 | 69% | (many diffs) | |
| 20 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_430120.4 | 68.6% | (many diffs) | |
| 21 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936140.3 | 68.4% | (many diffs) | |
| 22 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NR_147913.2 | 67.9% | (many diffs) | |
| 23 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_002958239.1 | 66.5% | (many diffs) | |
| 24 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_001753574.2 | 62.9% | (many diffs) | |
| 25 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936141.3 | 62.8% | (many diffs) | |
| 26 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_002958235.1 | 62.7% | (many diffs) | |
| 27 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_001753573.2 | 60.3% | (many diffs) | |
| 28 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936139.3 | 60.2% | (many diffs) | |
| 29 | human | 10147 | SUGP2 | SURP and G-patch domain con... | NR_147915.2 | 46.3% | (many diffs) | |
| 30 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936138.3 | 44.7% | (many diffs) | |
| 31 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936137.3 | 43.4% | (many diffs) | |
| 32 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_936142.2 | 43.1% | (many diffs) | |
| 33 | human | 10147 | SUGP2 | SURP and G-patch domain con... | XR_001753577.2 | 42% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3030
- ORF length:
- 2964
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTA TGATGACGTC CACAGCGATG GCAGATACTC CCTCAGTGGA TCTGTAGCTC 121 ACTCTAGAGA TGCCGGAAGA GAAGGCCTGA GAAGTGACGT ATTTCCAGGG CCTTCCTTCA 181 GATCAAGCAA CCCTTCCATC AGTGATGACA GCTACTTTCG CAAAGAATGT GGCCGGGATC 241 TGGAATTTTC TCACTCTGAT TCTCGGGACC AGGTCATTGG CCACCGGAAA TTGGGGCATT 301 TCCGTTCTCA GGACTGGAAA TTTGCGCTCC GTGGTTCTTG GGAACAAGAC TTTGGCCATC 361 CAGTTTCTCA AGAGTCCTCT TGGTCACAGG AGTATAGTTT TGGTCCCTCT GCAGTTTTGG 421 GGGACTTTGG ATCTTCCAGG CTGATTGAGA AAGAGTGTTT GGAGAAGGAG AGTCGGGATT 481 ATGACGTGGA CCATCCTGGG GAGGCTGACT CTGTGCTTAG GGGCAGCAGT CAAGTCCAGG 541 CCAGAGGTCG AGCTCTAAAC ATCGTTGACC AGGAAGGTTC CCTCCTAGGA AAGGGGGAGA 601 CTCAGGGCCT GCTCACAGCT AAGGGGGGTG TTGGGAAACT TGTCACATTG AGAAATGTGA 661 GCACAAAAAA AATACCCACC GTGAATCGTA TTACTCCCAA AACTCAGGGC ACTAACCAAA 721 TCCAGAAAAA CACTCCAAGT CCTGATGTGA CCCTGGGGAC AAACCCAGGG ACAGAAGATA 781 TCCAGTTCCC CATTCAGAAG ATCCCTCTGG GGCTGGATCT GAAGAATCTT CGGCTCCCCA 841 GAAGAAAGAT GAGCTTTGAC ATCATAGATA AGTCTGATGT TTTTTCAAGA TTTGGGATAG 901 AAATAATCAA ATGGGCAGGA TTCCACACCA TAAAAGATGA TATTAAATTT TCCCAACTTT 961 TCCAGACTCT CTTTGAACTT GAAACAGAAA CCTGTGCTAA AATGCTTGCC TCATTCAAAT 1021 GTTCCTTAAA ACCAGAGCAC AGAGATTTTT GCTTTTTTAC TATCAAATTT TTAAAGCACT 1081 CTGCTTTGAA AACACCCAGA GTTGATAATG AGTTTTTAAA CATGCTTTTA GACAAAGGTG 1141 CTGTGAAGAC CAAAAATTGC TTTTTTGAAA TCATAAAGCC TTTTGACAAG TACATAATGA 1201 GACTTCAAGA CCGGCTTCTG AAGAGTGTCA CACCTTTGCT TATGGCCTGC AATGCCTACG 1261 AGCTAAGTGT CAAGATGAAG ACCCTCAGTA ACCCCCTGGA CTTGGCTCTT GCCCTAGAAA 1321 CCACCAACTC TCTCTGCCGG AAGTCTTTGG CCCTTTTGGG ACAGACATTT TCCTTGGCCT 1381 CTTCTTTCCG GCAGGAGAAA ATCTTAGAAG CTGTCGGCCT GCAAGATATA GCTCCCTCAC 1441 CTGCTGCGTT TCCAAACTTC GAAGACTCCA CTTTGTTTGG GCGAGAGTAC ATAGACCACC 1501 TGAAGGCCTG GCTAGTCAGC AGCGGATGTC CCCTCCAGGT TAAGAAAGCC GAACCAGAGC 1561 CGATGCGAGA GGAGGAGAAA ATGATTCCTC CTACGAAACC TGAAATTCAG GCCAAGGCTC 1621 CAAGTAGTCT GAGTGATGCT GTCCCCCAGC GAGCAGATCA CAGGGTAGTG GGCACCATCG 1681 ACCAGCTTGT GAAACGTGTC ATCGAAGGCA GCCTGTCTCC CAAAGAGAGA ACTCTTCTCA 1741 AAGAGGACCC TGCTTACTGG TTTTTGTCTG ATGAAAATAG TCTGGAGTAT AAATATTACA 1801 AGCTGAAGTT GGCAGAAATG CAGCGGATGA GCGAGAACTT GCGAGGAGCC GACCAGAAGC 1861 CGACCTCAGC AGACTGTGCA GTGAGGGCCA TGCTGTACTC CCGGGCTGTC CGCAACCTCA 1921 AGAAGAAACT CCTTCCGTGG CAGCGGCGGG GGCTCCTCCG TGCTCAAGGG CTCCGGGGCT 1981 GGAAGGCGAG GAGAGCGACC ACCGGGACCC AGACCCTCCT ATCCTCAGGC ACCAGGCTGA 2041 AACACCACGG CCGGCAGGCT CCAGGCCTCT CACAGGCAAA ACCATCCCTG CCAGACAGAA 2101 ATGATGCTGC CAAGGACTGC CCGCCAGACC CAGTTGGACC TTCTCCTCAG GACCCCAGCT 2161 TAGAAGCCTC AGGCCCATCC CCCAAGCCAG CAGGAGTGGA CATCTCTGAA GCACCTCAGA 2221 CCTCTTCTCC CTGCCCATCT GCTGACATTG ACATGAAGAC AATGGAGACT GCAGAGAAAC 2281 TGGCTAGATT TGTTGCTCAG GTGGGACCAG AGATCGAACA ATTCAGCATA GAAAACAGCA 2341 CCGATAACCC TGACCTGTGG TTTCTACATG ACCAAAATAG TTCTGCTTTC AAATTCTATC 2401 GAAAGAAAGT GTTTGAACTA TGTCCATCAA TTTGTTTCAC GTCATCTCCG CACAACCTTC 2461 ACACTGGTGG TGGTGACACC ACGGGTTCTC AGGAGAGCCC CGTGGACCTC ATGGAAGGGG 2521 AAGCAGAGTT TGAAGACGAG CCCCCTCCGC GGGAGGCTGA GCTGGAGAGC CCAGAGGCCT 2581 CCTCAGGTAC CTGCTTCCCT CGGAAGAGGA TCAGCAGCAA GTCATTGAAG GTTGGCATGA 2641 TTCCAGCTCC CAAGAGAGTG TGTCTCATCC AGGAGCCAAA AGTCCATGAA CCAGTTCGAA 2701 TTGCCTATGA CAGGCCTCGG GGTCGTCCCA TGTCCAAAAA GAAGAAACCC AAGGACTTGG 2761 ACTTCGCCCA GCAGAAGCTG ACCGATAAGA ACCTGGGCTT CCAGATGCTG CAGAAGATGG 2821 GCTGGAAGGA GGGCCATGGC CTGGGCTCCC TCGGAAAGGG CATCAGGGAG CCGGTCAGCG 2881 TGTACGCAGC AGGCAGCCTG GGGTGGGAGT GGGTGGGGCC TCAGTCCTTC CACCTGCAGC 2941 CTGCCGCTTG GCTCCTTCAC AGCCAAGATG GCTTACAGCT GGCAGTTGAT TTTTGTTTTT 3001 TAAACAGAAG GCATCTTCAG ATGAGAAGCT GCCCAACTTT CTTGTACAAA GTTGGcatta 3061 taagaaagca ttgcttatca atttgttgca acgaac