Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11496
- Subject:
- XR_001749455.2
- Aligned Length:
- 4110
- Identities:
- 1265
- Gaps:
- 2815
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGTGGGAAGCGCCCGCGCTTTCGGCGGGTTCCGTTAAAATGGCGCCCTGGTGGCCGGCGGCGCCCGCGCCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCTGTCAGGAGCAGGGAGCTTGCGGGGCGCAGGAAGGGCGCGGGCCGCGGTCCCTGCGCGTGCGGCGGCAGT 148
Query 1 -----------------------------------------ATGGCGACCCCGGACCAGAAGTCGCCGAACGTT 33
|||||||||||||||||||||||||||||||||
Sbjct 149 GGCGGCTCTGCCCGGACCACCGTGCACGGCTCCGGGCGAGGATGGCGACCCCGGACCAGAAGTCGCCGAACGTT 222
Query 34 CTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGAAGCTGATGTAGCCCAGCAGTTCCAGTATGCTGT 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGAAGCTGATGTAGCCCAGCAGTTCCAGTATGCTGT 296
Query 108 GCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAGATGAATTTTTAGTAGCTGAAAAAATCAAGAAAG 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAGATGAATTTTTAGTAGCTGAAAAAATCAAGAAAG 370
Query 182 AGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTTTCAGAACTCCACAGAAAACTTCATTCACAGGGA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTTTCAGAACTCCACAGAAAACTTCATTCACAGGGA 444
Query 256 GTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAGCCTCAGTGAGGACCCACGCAGGCAGCCAAGCAA 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAGCCTCAGTGAGGACCCACGCAGGCAGCCAAGCAA 518
Query 330 GGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAAGAGATGCCCACTCAACCCCTTACTACTATGCCA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAAGAGATGCCCACTCAACCCCTTACTACTATGCCA 592
Query 404 GGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCCCAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGC 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCCCAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGC 666
Query 478 AGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCCCGCGCCTGCGCCACAATCTCTCCTCCCAGGACA 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCCCGCGCCTGCGCCACAATCTCTCCTCCCAGGACA 740
Query 552 GTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGCAGTTGGGGTCACGACTCGCATGGACTTTAACTG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGCAGTTGGGGTCACGACTCGCATGGACTTTAACTG 814
Query 626 CAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTCCCCAGTGCTGTGTCTCGCAACATGACAAGGTCC 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTCCCCAGTGCTGTGTCTCGCAACATGACAAGGTCC 888
Query 700 AGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGAAGCAGCTCTGGTAAGGGACATTTTGTACGTCTT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGAAGCAGCTCTGGTAAGGGACATTTTGTACGTCTT 962
Query 774 TCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTGAAAATTGTTACAAAGTAGAAGGAAAGGCAAATC 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTGAAAATTGTTACAAAGTAGAAGGAAAGGCAAATC 1036
Query 848 TAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAGTTGGGATGGTTGCATAATAAAATCAGAAGATAC 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAGTTGGGATGGTTGCATAATAAAATCAGAAGATAC 1110
Query 922 ACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGGGCAGAGCTTTTGTGCTGCCTTGCACCAGGAACT 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGGGCAGAGCTTTTGTGCTGCCTTGCACCAGGAACT 1184
Query 996 CAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGCTACAACTAGAGGATGACCAGGGTGTGAATTTGG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGCTACAACTAGAGGATGACCAGGGTGTGAATTTGG 1258
Query 1070 GACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGGACCTATGATCCCAAAATACGACTGAAGACCCTT 1143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGGACCTATGATCCCAAAATACGACTGAAGACCCTT 1332
Query 1144 GCGGCCCTAGTGGACCACTGCCAAGG----------------------TC------CCACGC------------ 1177
|||||||||||||||||||||||||| || ||||||
Sbjct 1333 GCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGAGCTGGCCTCAGCTGTCCACGCCTACACAAAAAC 1406
Query 1178 ---------------GCG---TCTTTCCCACGCACGTCTTTCCCA--CGCGCGACT---------------TTC 1216
||| |||....|| ||||.|| |.|| |.||.|.|| |||
Sbjct 1407 AGGAGACCCGTACATGCGGTCTCTGGTGCA-GCACATC---CTCAGCCTCGTGTCTCATCCTGTTTTGAGCTTC 1476
Query 1217 C--CACGCGC------------------------GAC-TTTCCCATGCACGTCTT-----------TCCCAC-- 1250
| .|| ||| ||| .||.|||.|.|..|.|| |||.||
Sbjct 1477 CTGTAC-CGCTGGATATATGATGGGGAGCTTGAGGACACTTACCACGAATTTTTTGTAGCATCAGATCCAACAG 1549
Query 1251 --------GCGCGTCTTTCCCACG-CGCGTCT-------GGCACTCG-------CTTTGTT------------T 1289
|..||.||.|..|||| |..||.| ||.|.||| |||.||| |
Sbjct 1550 TTAAAACAGATCGACTGTGGCACGACAAGTATACTTTGAGGAAATCGATGATTCCTTCGTTTATGACGATGGAT 1623
Query 1290 CA------GAA----CTCGTTTG--------------------------------------------------- 1302
|| ||| || ||||
Sbjct 1624 CAGTCTAGGAAGGTCCT--TTTGATAGGAAAATCAATAAATTTCTTGCACCAAGTTTGTCATGATCAGACTCCC 1695
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1696 ACTACAAAGATGATAGCTGTGACCAAGTCTGCAGAGTCACCCCAGGACGCTGCAGACCTATTCACAGACTTGGA 1769
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1770 AAATGCATTTCAGGGGAAGATTGATGCTGCTTATTTTGAGACCAGCAAATACCTGTTGGATGTTCTCAATAAAA 1843
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1844 AGTACAGCTTGCTGGACCACATGCAGGCAATGAGGCGGTACCTGCTTCTTGGTCAAGGAGACTTTATAAGGCAC 1917
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1918 TTAATGGACTTGCTAAAAGTTAAATGTATGTCCTTCTCCACAAGTTCTGGACCAGAGCCTGCTGTGCTTCTAGG 1991
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1992 TCTAGAGACAGTGCAGACCCCGGCCCAGGCAGCGTGAGCCTGGGCATGAGCATCCCAGGGGTCCACAGCCTGGG 2065
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2066 CCTGGAGATTTTCACCCAAGTGTTTAGAAGAATGAAACTTCTTTTCTGGTGTTCCTTTTAGGACACTTAAAACC 2139
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2140 AGAACTTGTCCGTCCAGCTACGACTTTGTATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCA 2213
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2214 CCAACGCACAGTTTGACAGTCCTGAGATCCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGAC 2287
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2288 ACTGGATGGGATGTCTTCAGCCTCGATTATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTAT 2361
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2362 GAGCCACTACCTAAGAGTATTTAACTTCCTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGA 2435
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2436 AGGGACACATGTGCAATGCAAAGCTCCTGAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATT 2509
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2510 TTGGCCTCTGAGATGGTCCATTTCATTCATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTG 2583
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2584 GGATGAGCTTTGGAACAAAGTCCAGCAGGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAG 2657
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2658 ACACCATCATCTCCCGCTGCCTGCTGGACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGAT 2731
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2732 CAAATTATTGAACTTCAGAATGCTCAAGATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACA 2805
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2806 GTTTGAAGAGAAAAAGAAACAGCGTGAAATTGAGGGCCAGTGGGGAGTGACGGCAGCAGAGGAAGAGGAGGAAA 2879
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2880 ATAAGAGGATTGGAGAATTTAAAGAATCTATACCAAAAATGTGCTCACAGTTGCGAATATTGACCCATTTCTAC 2953
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2954 CAGGGTATCGTGCAGCAGTTTTTGGTGTTACTGACGACCAGCTCTGACGAGAGTCTTCGGTTTCTTAGCTTCAG 3027
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3028 GCTGGACTTCAACGAGCATTACAAAGCCAGGGAGCCCAGGCTCCGTGTGTCTCTGGGTACCAGGGGGCGGCGCA 3101
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3102 GCTCCCACACGTGAAGCTCGCGGTCCTCCCAGGGAGCTGCGGGTGATGTTCGTTGCACTGCTAGACACGAAATT 3175
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3176 CCCATTGACGTCCTGCAGGAACTGCATGCTGCAGGTGTCCTGCCCTTCCGCCCACGAGTGCGCCATGTTTCAGC 3249
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3250 GGAGCGGCGTGTGGGAGAAGCCACGTCGTGTTTCACATGTCGGAGTCGAATGCATTTGTAAATCCCTAAGTCAA 3323
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3324 GTAGGCTGGCTGCACTGTTCACATTTGTCTCTAAAAGTCTTCATCGCTAAAAGATACCATAATTTGCTGAGGCT 3397
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3398 TCTTAAGCTTTCTATGTTATAATTTATATTTGTCACTTTAAAAAATCCATTTCTTTTAGAAAAAATTAGGGTGA 3471
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3472 TAGGATATTCATTAGTTAAGATGGTAACGTCATTGCTATTTTTTTAACATCCTCTTTAGAGGTAATTTTTGTTA 3545
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3546 ACATAACCAAAAATTAAATTGAAACAAAATGTCCCAACTAAGAAAATATATAGAGCATTTTATTTTTTTTTAGT 3619
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3620 GTTGTAAAATATTAACCTCTGTGAGATCCTTTGTATCTTAATGCATTACCTTTACACATATTTATTCTTATTTT 3693
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3694 CTCTCCTTTCAGAGTTTACATTTTTATATTTAATTTACTATTTCAGATTTTTAAAATAGTATAGAAAAAAGTAG 3767
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3768 GAGTGATAGAGAACAAAAATACTCTTATACAGTGCAACCCAAATACCGCGAATGCATCAGCTAAAGCAGCGTGT 3841
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3842 AAATAGGAGTGACGAGAAAGTTAATGGAGTATTTTATTTTCAAAGTTCCTGATAAGCATTGGAAAGAAATCGAC 3915
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3916 ATGGATAATGAAGATTTCCTTTTTCCTTGCCTATTTTTTCATTGTAAATATTTATATACTACTGACCAAGATGT 3989
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 3990 TGGGGTGGGGGGGATTGTTTTTTGTAAAAATGTCATTATCAGGTCACATAAATCTGCCTTTATGTTGCATAAGT 4063
Query 1303 ---------------------------------------- 1302
Sbjct 4064 GAAAATTTAGAAAATTAAAAGCAATTATCTTTCAGATGCA 4103
