Construct: ORF ccsbBroadEn_11496

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017005.1_s300c1, BRDN0000392772
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TUBGCP3 (10426)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_001286279.1 98.8% 98.8% 1197_1211del
2 human 10426 TUBGCP3 tubulin gamma complex assoc... XM_005268293.2 51.4% 49.1% (many diffs)
3 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_001286278.2 51% 48.7% (many diffs)
4 human 10426 TUBGCP3 tubulin gamma complex assoc... XM_011537462.2 50.1% 45.2% (many diffs)
5 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_006322.6 46.3% 44.3% (many diffs)
6 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_001286277.2 45.2% 43.2% (many diffs)
7 human 10426 TUBGCP3 tubulin gamma complex assoc... XR_001749455.2 30.7% (many diffs)
8 human 10426 TUBGCP3 tubulin gamma complex assoc... XM_017020323.2 21.1% 19% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1368
ORF length:
1302
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GACCCCGGAC CAGAAGTCGC CGAACGTTCT GCTGCAGAAC CTGTGCTGCA
121GGATCCTGGG CAGGAGCGAA GCTGATGTAG CCCAGCAGTT CCAGTATGCT GTGCGGGTGA
181TTGGCAGCAA CTTCGCCCCA ACTGTTGAAA GAGATGAATT TTTAGTAGCT GAAAAAATCA
241AGAAAGAGCT TATTCGACAA CGAAGAGAAG CAGATGCTGC ATTATTTTCA GAACTCCACA
301GAAAACTTCA TTCACAGGGA GTTTTGAAAA ATAAATGGTC AATACTCTAC CTCTTGCTGA
361GCCTCAGTGA GGACCCACGC AGGCAGCCAA GCAAGGTTTC TAGCTATGCT ACGTTATTTG
421CTCAGGCCTT ACCAAGAGAT GCCCACTCAA CCCCTTACTA CTATGCCAGG CCTCAGACCC
481TTCCCCTGAG CTACCAAGAT CGGAGTGCCC AGTCAGCCCA GAGCTCCGGC AGCGTGGGCA
541GCAGTGGCAT CAGCAGCATT GGCCTGTGTG CCCTCAGTGG CCCCGCGCCT GCGCCACAAT
601CTCTCCTCCC AGGACAGTCT AATCAAGCTC CAGGAGTAGG AGATTGCCTT CGACAGCAGT
661TGGGGTCACG ACTCGCATGG ACTTTAACTG CAAATCAGCC TTCTTCACAA GCCACTACCT
721CAAAAGGTGT CCCCAGTGCT GTGTCTCGCA ACATGACAAG GTCCAGGAGA GAAGGGGATA
781CGGGTGGTAC TATGGAAATT ACAGAAGCAG CTCTGGTAAG GGACATTTTG TACGTCTTTC
841AGGGCATAGA TGGCAAAAAC ATCAAAATGA ACAACACTGA AAATTGTTAC AAAGTAGAAG
901GAAAGGCAAA TCTAAGTAGG TCTTTGAGAG ACACAGCAGT CAGGCTTTCT GAGTTGGGAT
961GGTTGCATAA TAAAATCAGA AGATACACGG ACCAGAGGAG CCTGGACCGC TCATTCGGAC
1021TCGTCGGGCA GAGCTTTTGT GCTGCCTTGC ACCAGGAACT CAGAGAATAC TATCGATTGC
1081TCTCTGTTTT ACATTCTCAG CTACAACTAG AGGATGACCA GGGTGTGAAT TTGGGACTTG
1141AGAGTAGTTT AACACTTCGG CGCCTCCTGG TTTGGACCTA TGATCCCAAA ATACGACTGA
1201AGACCCTTGC GGCCCTAGTG GACCACTGCC AAGGTCCCAC GCGCGTCTTT CCCACGCACG
1261TCTTTCCCAC GCGCGACTTT CCCACGCGCG ACTTTCCCAT GCACGTCTTT CCCACGCGCG
1321TCTTTCCCAC GCGCGTCTGG CACTCGCTTT GTTTCAGAAC TCGTTTGTAC CCAACTTTCT
1381TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)