Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11524
Subject:
NM_001034964.1
Aligned Length:
2595
Identities:
1320
Gaps:
1086

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG  145
            ||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct   75  CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG  148

Query  146  AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAAACCAGATGAGTGGAGGCTT  219
            .||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||..|||||||.||||..|||
Sbjct  149  GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGATGAATGGAAACTT  222

Query  220  TCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCC  293
            |||||||||||.|||.|||||||.||.|||||||||||..||||.||||||||||||||.||||||||||||||
Sbjct  223  TCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCC  296

Query  294  CAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTC  367
            ||.||||.||.||||||||.||||||                                                
Sbjct  297  CAGCCTTTCTGCTGACAAGCCCCAGG------------------------------------------------  322

Query  368  TCTACCTGGTTAATACTGACAGAGGGCAAGAAGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGC  441
                                                                                      
Sbjct  323  --------------------------------------------------------------------------  322

Query  442  GTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGACTCTAGATGATTTCATTCCCCC  515
                                                                                      
Sbjct  323  --------------------------------------------------------------------------  322

Query  516  TCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGC  589
                                                                                      
Sbjct  323  --------------------------------------------------------------------------  322

Query  590  CACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGAC  663
                                                                                      
Sbjct  323  --------------------------------------------------------------------------  322

Query  664  CTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGA  737
                                        .|||||||.|||||||.||||||||||||||||..||||.|||.||
Sbjct  323  ----------------------------GCAGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGA  368

Query  738  TTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCCACAACGATTGTCAATCCTACTA  808
            ||||||||.|||   ||||.||   ||||..|||||.||.|||||.||||||||.||.||.|||||.|||||.|
Sbjct  369  TTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCA  439

Query  809  TTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGA  882
            ||||||||.||||.|||||||||||.||||||||.|||||||||||.|||||||||||||.||||||.||||||
Sbjct  440  TTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGA  513

Query  883  GTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAA  956
            |.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||.||||..|||.|.|||.|||||
Sbjct  514  GCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAA  587

Query  957  GGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCATCCCAC  1030
            |||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.|..|||||||||||||||||||
Sbjct  588  GGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCAC  661

Query 1031  TCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGATCCACAAACTGAACAGAGATGAT  1104
            |||||||.||.|||.||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  662  TCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGATGAT  735

Query 1105  GATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAA  1178
            |||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.||||||||||||||||||||||||||
Sbjct  736  GATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAA  809

Query 1179  AAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTT  1252
            |||||||||||.||||||.||.||.|||||.||.||.||||||||.||||||||.||.||||||||||||||.|
Sbjct  810  AAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCT  883

Query 1253  CCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGAAAGTAGACACAAGAAAATATCGT  1326
            |||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||||||.||.||.||||||||.||.
Sbjct  884  CCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGA  957

Query 1327  GCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTGACCAACGAAAAGATGAGCTCAGC  1400
            |||||||||||.||||||||||||||||||||.|||||||||||.||.||||||||.||.||||||||||||||
Sbjct  958  GCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAGCTCAGC  1031

Query 1401  CATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGA  1474
            ..|||||||.|||||.||.|||.|.||||||.|||||||||||||.||||||||||||||||||||||||||||
Sbjct 1032  AGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGA  1105

Query 1475  GGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAA  1548
            |.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.||||||||||||
Sbjct 1106  GAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAA  1179

Query 1549  GGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGA  1622
            |||||.||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||
Sbjct 1180  GGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGA  1253

Query 1623  ATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATA  1696
            .||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.|||||||
Sbjct 1254  GTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATA  1327

Query 1697  AAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCAC  1770
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.||||||
Sbjct 1328  AAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCAC  1401

Query 1771  ACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATAC  1844
            |||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1402  ACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATAC  1475

Query 1845  TGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA-----------  1884
            .||.||||||||||||||||.||||                  ||||.|||||     |..||           
Sbjct 1476  GGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGG  1549

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1550  AGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACAC  1623

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1624  CATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAA  1697

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1698  GTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAG  1771

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1772  AAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATT  1845

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1846  CCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCC  1919

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1920  TGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAG  1993

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1994  CCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGT  2067

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2068  TATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGA  2141

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2142  TGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTAT  2215

Query 1885  -----  1884
                 
Sbjct 2216  ATCTA  2220

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