Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11524
- Subject:
- NM_001034964.1
- Aligned Length:
- 2595
- Identities:
- 1320
- Gaps:
- 1086
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG 145
||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct 75 CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG 148
Query 146 AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAAACCAGATGAGTGGAGGCTT 219
.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||..|||||||.||||..|||
Sbjct 149 GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGATGAATGGAAACTT 222
Query 220 TCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCC 293
|||||||||||.|||.|||||||.||.|||||||||||..||||.||||||||||||||.||||||||||||||
Sbjct 223 TCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCC 296
Query 294 CAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTC 367
||.||||.||.||||||||.||||||
Sbjct 297 CAGCCTTTCTGCTGACAAGCCCCAGG------------------------------------------------ 322
Query 368 TCTACCTGGTTAATACTGACAGAGGGCAAGAAGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGC 441
Sbjct 323 -------------------------------------------------------------------------- 322
Query 442 GTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGACTCTAGATGATTTCATTCCCCC 515
Sbjct 323 -------------------------------------------------------------------------- 322
Query 516 TCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGC 589
Sbjct 323 -------------------------------------------------------------------------- 322
Query 590 CACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGAC 663
Sbjct 323 -------------------------------------------------------------------------- 322
Query 664 CTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGA 737
.|||||||.|||||||.||||||||||||||||..||||.|||.||
Sbjct 323 ----------------------------GCAGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGA 368
Query 738 TTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCCACAACGATTGTCAATCCTACTA 808
||||||||.||| ||||.|| ||||..|||||.||.|||||.||||||||.||.||.|||||.|||||.|
Sbjct 369 TTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCA 439
Query 809 TTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGA 882
||||||||.||||.|||||||||||.||||||||.|||||||||||.|||||||||||||.||||||.||||||
Sbjct 440 TTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGA 513
Query 883 GTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAA 956
|.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||.||||..|||.|.|||.|||||
Sbjct 514 GCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAA 587
Query 957 GGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCATCCCAC 1030
|||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.|..|||||||||||||||||||
Sbjct 588 GGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCAC 661
Query 1031 TCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGATCCACAAACTGAACAGAGATGAT 1104
|||||||.||.|||.||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 662 TCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGATGAT 735
Query 1105 GATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAA 1178
|||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.||||||||||||||||||||||||||
Sbjct 736 GATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAA 809
Query 1179 AAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTT 1252
|||||||||||.||||||.||.||.|||||.||.||.||||||||.||||||||.||.||||||||||||||.|
Sbjct 810 AAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCT 883
Query 1253 CCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGAAAGTAGACACAAGAAAATATCGT 1326
|||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||||||.||.||.||||||||.||.
Sbjct 884 CCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGA 957
Query 1327 GCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTGACCAACGAAAAGATGAGCTCAGC 1400
|||||||||||.||||||||||||||||||||.|||||||||||.||.||||||||.||.||||||||||||||
Sbjct 958 GCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAGCTCAGC 1031
Query 1401 CATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGA 1474
..|||||||.|||||.||.|||.|.||||||.|||||||||||||.||||||||||||||||||||||||||||
Sbjct 1032 AGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGA 1105
Query 1475 GGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAA 1548
|.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.||||||||||||
Sbjct 1106 GAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAA 1179
Query 1549 GGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGA 1622
|||||.||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||
Sbjct 1180 GGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGA 1253
Query 1623 ATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATA 1696
.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.|||||||
Sbjct 1254 GTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATA 1327
Query 1697 AAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCAC 1770
||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.||||||
Sbjct 1328 AAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCAC 1401
Query 1771 ACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATAC 1844
|||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1402 ACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATAC 1475
Query 1845 TGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA----------- 1884
.||.||||||||||||||||.|||| ||||.||||| |..||
Sbjct 1476 GGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGG 1549
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1550 AGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACAC 1623
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1624 CATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAA 1697
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1698 GTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAG 1771
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1772 AAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATT 1845
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1846 CCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCC 1919
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1920 TGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAG 1993
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 1994 CCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGT 2067
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2068 TATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGA 2141
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2142 TGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTAT 2215
Query 1885 ----- 1884
Sbjct 2216 ATCTA 2220
