Construct: ORF ccsbBroadEn_11524
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002855.1_s300c1, BRDN0000389870
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SORBS1 (10580)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_015385.4 | 74% | 67.8% | (many diffs) |
| 2 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015524.1 | 72.6% | 72.3% | (many diffs) |
| 3 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015523.1 | 71.8% | 71.5% | (many diffs) |
| 4 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015522.2 | 70% | 69.7% | (many diffs) |
| 5 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015521.1 | 69.6% | 69.3% | (many diffs) |
| 6 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015520.2 | 69.3% | 69% | (many diffs) |
| 7 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015518.1 | 67.7% | 67.4% | (many diffs) |
| 8 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015517.2 | 67.4% | 67.1% | (many diffs) |
| 9 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015516.2 | 66.1% | 65.8% | (many diffs) |
| 10 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015515.2 | 65.4% | 65.2% | (many diffs) |
| 11 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001290296.1 | 62.4% | 62.2% | (many diffs) |
| 12 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_006717589.2 | 62.4% | 62.1% | (many diffs) |
| 13 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_006434.2 | 59.8% | 54% | (many diffs) |
| 14 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001034957.1 | 58.4% | 58.1% | (many diffs) |
| 15 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_006717593.1 | 58.3% | 58% | (many diffs) |
| 16 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001290295.2 | 57.7% | 57.4% | (many diffs) |
| 17 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001034956.1 | 57.2% | 57% | (many diffs) |
| 18 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015540.1 | 56.7% | 56.4% | (many diffs) |
| 19 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015539.1 | 56.5% | 56.2% | (many diffs) |
| 20 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015537.2 | 56.2% | 55.9% | (many diffs) |
| 21 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015536.1 | 56.1% | 55.8% | (many diffs) |
| 22 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015535.1 | 55.9% | 55.6% | (many diffs) |
| 23 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015510.2 | 55.7% | 51.3% | (many diffs) |
| 24 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_024991.3 | 55.7% | 55.4% | (many diffs) |
| 25 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015533.1 | 54.9% | 54.6% | (many diffs) |
| 26 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_011539167.1 | 54.9% | 54.6% | (many diffs) |
| 27 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015505.2 | 54.8% | 54.5% | (many diffs) |
| 28 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015532.2 | 54.5% | 54.2% | (many diffs) |
| 29 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001034955.1 | 54.4% | 54.3% | (many diffs) |
| 30 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015530.2 | 54.2% | 53.9% | (many diffs) |
| 31 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015529.2 | 54% | 53.7% | (many diffs) |
| 32 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001290297.1 | 53.9% | 53.7% | (many diffs) |
| 33 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015503.2 | 53.5% | 53.2% | (many diffs) |
| 34 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015507.2 | 53.1% | 49% | (many diffs) |
| 35 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_024447770.1 | 53% | 52.7% | (many diffs) |
| 36 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015527.1 | 52.6% | 52.4% | (many diffs) |
| 37 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015502.2 | 52.3% | 52.1% | (many diffs) |
| 38 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015501.2 | 51% | 50.8% | (many diffs) |
| 39 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001290294.2 | 49.4% | 49.2% | (many diffs) |
| 40 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_024447769.1 | 48.5% | 48.3% | (many diffs) |
| 41 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | NM_001034954.1 | 48.5% | 48.3% | (many diffs) |
| 42 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_011539155.1 | 45.4% | 45.2% | (many diffs) |
| 43 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015500.2 | 44.4% | 41.1% | (many diffs) |
| 44 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015513.1 | 43.1% | 42.9% | (many diffs) |
| 45 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015512.1 | 43% | 42.8% | (many diffs) |
| 46 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015511.2 | 41.7% | 41.5% | (many diffs) |
| 47 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_011539150.2 | 41.6% | 41.4% | (many diffs) |
| 48 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_011539140.2 | 40.9% | 40.7% | (many diffs) |
| 49 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015509.1 | 40.8% | 40.5% | (many diffs) |
| 50 | human | 10580 | SORBS1 | sorbin and SH3 domain conta... | XM_017015506.2 | 39.7% | 39.5% | (many diffs) |
| 51 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247195.1 | 54.3% | 54.1% | (many diffs) |
| 52 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | NM_001034964.1 | 50.8% | 51.6% | (many diffs) |
| 53 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247198.1 | 48.9% | 48.7% | (many diffs) |
| 54 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247190.1 | 47.6% | 47.4% | (many diffs) |
| 55 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247197.1 | 46.3% | 46.1% | (many diffs) |
| 56 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526806.3 | 46.2% | 46% | (many diffs) |
| 57 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247189.1 | 45.2% | 44.9% | (many diffs) |
| 58 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_017318093.1 | 44.4% | 44.1% | (many diffs) |
| 59 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247186.1 | 43.5% | 43.3% | (many diffs) |
| 60 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247193.1 | 43.4% | 43.1% | (many diffs) |
| 61 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_017318092.1 | 43.3% | 43% | (many diffs) |
| 62 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247185.1 | 42.8% | 42.5% | (many diffs) |
| 63 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247192.1 | 42.5% | 42.3% | (many diffs) |
| 64 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_017318091.1 | 37.4% | 37.2% | (many diffs) |
| 65 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247183.1 | 36.4% | 36.2% | (many diffs) |
| 66 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247178.1 | 30.9% | 30.8% | (many diffs) |
| 67 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526798.3 | 30.3% | 30.2% | (many diffs) |
| 68 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526804.3 | 30.2% | 30.6% | (many diffs) |
| 69 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247177.1 | 30.2% | 30% | (many diffs) |
| 70 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247176.1 | 28% | 27.8% | (many diffs) |
| 71 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247175.1 | 27.6% | 27.4% | (many diffs) |
| 72 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247174.1 | 27.3% | 27.2% | (many diffs) |
| 73 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247172.1 | 26.8% | 26.7% | (many diffs) |
| 74 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526795.3 | 26.7% | 26.6% | (many diffs) |
| 75 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526793.3 | 26.6% | 26.5% | (many diffs) |
| 76 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247173.1 | 26.4% | 26.2% | (many diffs) |
| 77 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526789.3 | 26.2% | 26.1% | (many diffs) |
| 78 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526790.3 | 26.2% | 26.1% | (many diffs) |
| 79 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526792.3 | 26.2% | 26.1% | (many diffs) |
| 80 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_017318090.1 | 25.5% | 25.7% | (many diffs) |
| 81 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247180.1 | 24.5% | 24.9% | (many diffs) |
| 82 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_017318089.1 | 24.1% | 24.4% | (many diffs) |
| 83 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_011247181.1 | 24% | 24.3% | (many diffs) |
| 84 | mouse | 20411 | Sorbs1 | sorbin and SH3 domain conta... | XM_006526807.3 | 17.7% | 18.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1950
- ORF length:
- 1884
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TTCTGAATGT GATGGTGGTT CCAAAGCTGT GATGAATGGC TTGGCACCTG 121 GCAGCAATGG GCAAGACAAA GACATGGATC CTACAAAAAT CTGCACTGGG AAGGGAGCGG 181 TGACTCTCCG GGCCTCGTCT TCCTACAGGG AAACCCCAAG CAGTAGCCCT GCGAGCCCTC 241 AGGAAACCCG GCAACACGAA AGCAAACCAG ATGAGTGGAG GCTTTCTTCC AGTGCTGATG 301 CCAATGGAAA TGCCCAGCCC TCTTCACTCG CTGCCAAGGG CTACAGAAGT GTGCATCCCA 361 ACCTTCCTTC TGACAAGTCC CAGGATGCCA CTTCCTCCAG TGCAGCCCAG CCGGAGGTAA 421 TAGTTGTCCC TCTCTACCTG GTTAATACTG ACAGAGGGCA AGAAGGCACT GCCAGACCTC 481 CAACACCTCT GGGGCCTCTT GGCTGCGTCC CCACAATCCC AGCGACTGCC TCTGCCGCCT 541 CACCTCTGAC CTTCCCGACT CTAGATGATT TCATTCCCCC TCATCTGCAG AGGTGGCCCC 601 ACCACAGCCA GCCAGCCCGC GCCTCTGGCT CCTTTGCCCC CATTAGCCAG ACGCCACCAT 661 CCTTCTCACC ACCACCTCCG CTGGTCCCTC CTGCCCCGGA GGACCTCCGC AGAGTCTCGG 721 AGCCTGACCT CACGGGAGCT GTTTCGAGTA CCGATTCCAG TCCTCTACTA AATGAAGTTT 781 CTTCTTCCCT TATTGGAACT GATTCCCAAG CCTTTCCATC AGTTAGCAAG CCTTCATCCG 841 CCTATCCCTC CACAACGATT GTCAATCCTA CTATTGTGCT CTTGCAACAC AATCGAGAAC 901 AGCAAAAACG ACTCAGTAGC CTTTCAGATC CTGTCTCAGA AAGAAGAGTG GGAGAGCAGG 961 ACTCAGCACC AACCCAGGAA AAACCCACCT CACCTGGCAA GGCTATTGAA AAAAGAGCAA 1021 AGGATGACAG TAGGCGGGTG GTGAAGAGCA CTCAGGACTT AAGCGATGTT TCCATGGATG 1081 AAGTGGGCAT CCCACTCCGG AACACTGAGA GATCAAAAGA CTGGTACAAG ACTATGTTTA 1141 AACAGATCCA CAAACTGAAC AGAGATGATG ATTCAGATCT GTACTCTCCC AGATACTCAT 1201 TTTCTGAAGA CACAAAATCT CCCCTTTCTG TGCCTCGCTC AAAAAGTGAG ATGAGCTACA 1261 TTGATGGTGA GAAGGTAGTC AAGAGGTCGG CCACACTACC CCTCCCAGCC CGCTCTTCCT 1321 CACTGAAGTC AAGCTCAGAA AGAAATGACT GGGAACCCCC AGATAAGAAA GTAGACACAA 1381 GAAAATATCG TGCAGAGCCC AAGAGCATTT ACGAATATCA GCCTGGCAAG TCTTCCGTTC 1441 TGACCAACGA AAAGATGAGC TCAGCCATCA GCCCTACTCC GGAAATTTCT TCAGAGACTC 1501 CTGGATATAT ATATTCTTCC AACTTCCATG CAGTGAAGAG GGAATCAGAC GGGGCTCCTG 1561 GGGATCTCAC TAGCTTGGAG AATGAGAGAC AAATTTATAA AAGTGTCTTG GAAGGTGGTG 1621 ACATCCCTCT TCAGGGCCTG AGTGGGCTCA AGCGACCATC CAGCTCTGCT TCCACTAAAG 1681 ATTCAGAATC GCCAAGACAT TTTATACCAG CTGATTACTT GGAATCCACG GAAGAATTTA 1741 TTCGAAGACG TCATGATGAT AAAGAGAAAC TTTTAGCGGA CCAGAGACGA CTTAAACGCG 1801 AGCAAGAAGA GGCTGATATT GCAGCTCGAC GCCACACAGG CGTCATTCCG ACGCACCATC 1861 AGTTTATCAC TAATGAGCGC TTTGGGGACC TCCTCAATAT AGACGATACT GCAAAAAGGA 1921 AATCTGGGTC AGAGAAATAT GACTGGGCAT ACCCAACTTT CTTGTACAAA GTtggcatta 1981 taagaaagca ttgcttatca atttgttgca acgaac