Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11524
- Subject:
- XM_006526804.3
- Aligned Length:
- 4275
- Identities:
- 1294
- Gaps:
- 2796
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG 145
||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct 75 CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG 148
Query 146 AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA------------------- 200
.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 149 GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGCCTGGAGCCAGAG 222
Query 201 --------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGC 266
|.|||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.||
Sbjct 223 GACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGC 296
Query 267 TGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAG 340
||||||||||||.||||||||||||||||.||||.||.||||||||.||||||
Sbjct 297 TGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGG--------------------- 349
Query 341 CCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGAAGGCACTGCCAGACCT 414
Sbjct 350 -------------------------------------------------------------------------- 349
Query 415 CCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTT 488
Sbjct 350 -------------------------------------------------------------------------- 349
Query 489 CCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTG 562
Sbjct 350 -------------------------------------------------------------------------- 349
Query 563 GCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAG 636
Sbjct 350 -------------------------------------------------------------------------- 349
Query 637 GACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGA 710
.|||||||.|||||||.||
Sbjct 350 -------------------------------------------------------GCAGTCCTTTACTAAACGA 368
Query 711 AGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATC 781
||||||||||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||.|||||.|
Sbjct 369 AGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACC 439
Query 782 CCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGC 855
|||||||.||.||.|||||.|||||.|||||||||.||||.||||||||
Sbjct 440 CCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCG------------------------- 488
Query 856 CTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACC 929
||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||
Sbjct 489 -----AGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCC 557
Query 930 TGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATG 1003
.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.|||||||
Sbjct 558 CGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATG 631
Query 1004 TTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAA 1077
|.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||||||||||
Sbjct 632 TGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAA 705
Query 1078 CAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAA 1151
||||||||||||||||||||||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||
Sbjct 706 CAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAA 779
Query 1152 ATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGG 1225
.|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.|
Sbjct 780 GTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCG 853
Query 1226 CCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGAT 1299
|||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||
Sbjct 854 CCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGAT 927
Query 1300 AAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGT 1373
||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||
Sbjct 928 AAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGT 1001
Query 1374 TCTGACCAACGAAAAGAT-------------------------------------------------------- 1391
.||||||||.||.|||||
Sbjct 1002 CCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAAT 1075
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1076 TCTTTTCGGAATTGGAGTTTGGGAGACCGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAG 1149
Query 1392 --------------------------------------------------------GAGCTCAGCCATCAGCCC 1409
|||||||||..|||||||
Sbjct 1150 GCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCC 1223
Query 1410 TACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAG 1483
.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.|
Sbjct 1224 GACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGG 1297
Query 1484 ACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGAC 1557
|||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.|||
Sbjct 1298 ACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGAC 1371
Query 1558 ATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAA------------------ 1613
|||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||
Sbjct 1372 ATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGTGGATCGTAAAGGCGG 1445
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1446 GAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGT 1519
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1520 GTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGG 1593
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1594 CTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGA 1667
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1668 GAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGC 1741
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1742 TCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCC 1815
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1816 AGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAA 1889
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1890 CCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCA 1963
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1964 GACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCC 2037
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2038 TCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCT 2111
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2112 GAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGT 2185
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2186 CTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAAT 2259
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2260 ATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGA 2333
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2334 CCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATC 2407
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2408 GCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAG 2481
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2482 TCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGAT 2555
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2556 GAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAG 2629
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2630 AGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCC 2703
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2704 CTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAG 2777
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2778 ACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGG 2851
Query 1614 -------------------------------------------AGATTCAGAATCGCCAAGACATTTTATACCA 1644
|||||||||.||.||||||||||||||||||
Sbjct 2852 ACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAGATTCAGAGTCACCAAGACATTTTATACCA 2925
Query 1645 GCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCA 1718
||||||||||||||.|||||.||||||||||||||.|||||.||.|||||||||||||||||||||||||||||
Sbjct 2926 GCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACCA 2999
Query 1719 GAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCACC 1792
||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.||.|
Sbjct 3000 GAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATC 3073
Query 1793 ATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTCA 1866
||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||.|
Sbjct 3074 ATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTA 3147
Query 1867 GAG------------------AAATATGACT-----GGGCA--------------------------------- 1884
||| ||||.||||| |..||
Sbjct 3148 GAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGA 3221
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3222 CGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCC 3295
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3296 CACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTG 3369
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3370 GAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGA 3443
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3444 GAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCA 3517
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3518 TTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCT 3591
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3592 TATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCC 3665
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3666 AGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATG 3739
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3740 AGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCG 3813
Query 1885 --------------------------------------------------------- 1884
Sbjct 3814 AGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA 3870
