Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11524
Subject:
XM_006526806.3
Aligned Length:
3546
Identities:
1641
Gaps:
1671

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG  145
            ||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct   75  CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG  148

Query  146  AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAAACCAGATGAGTGGAGGCTT  219
            .||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||..|||||||.||||..|||
Sbjct  149  GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGATGAATGGAAACTT  222

Query  220  TCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCC  293
            |||||||||||.|||.|||||||.||.|||||||||||..||||.||||||||||||||.||||||||||||||
Sbjct  223  TCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCC  296

Query  294  CAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTC  367
            ||.||||.||.||||||||.||||||.||||||.||||||||..||||||.|.|.||||||||||||||.||||
Sbjct  297  CAGCCTTTCTGCTGACAAGCCCCAGGGTGCCACCTCCTCCAGCTCAGCCCCGTCTGAGGTAATAGTTGTTCCTC  370

Query  368  TCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTT  435
            ||||||||||||||||||||||      ||||||||||||||||||||||.|||||.||.||||||||||.|||
Sbjct  371  TCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCCAGAACTCCAGCATCTCTGGGGCCACTT  444

Query  436  GGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGACTCTAGATGATTTCAT  509
            ||||||||||.|||..||||.|||||..||.||||.|||||||||||||||||||||||.||.|||||||||||
Sbjct  445  GGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTCTGACCTTCCCGACACTCGATGATTTCAT  518

Query  510  TCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCC  583
            |||||||||.|||||||||.|||||||||||||||||||||||.|.||.|.|||||||.|..||||...|||||
Sbjct  519  TCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAGTGCTTGTGGCTCCCTCTCCCCTGCTAGCC  592

Query  584  AGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAG  657
            |||||.|||||.|   |||||||||||||||||||||||||||.|.||||||||||||||.|||||.|..||||
Sbjct  593  AGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCGTCCCGGAGGACCTCCACAGAGGCCTGGAG  663

Query  658  CCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGG  731
            |||||||||.||||||||||.||.|||||||   .|||||||.|||||||.||||||||||||||||..||||.
Sbjct  664  CCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGA  734

Query  732  AACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCCACAACGATTGTCAATC  802
            |||.||||||||||.|||   ||||.||   ||||..|||||.||.|||||.||||||||.||.||.|||||.|
Sbjct  735  AACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACC  805

Query  803  CTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAA  876
            ||||.|||||||||.||||.|||||||||||.||||||||.|||||||||||.|||||||||||||.||||||.
Sbjct  806  CTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAG  879

Query  877  AGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAG  950
            |||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||.||||..|||.|.|||
Sbjct  880  AGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAG  953

Query  951  AGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCA  1024
            .||||||||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.|..|||||||||||||
Sbjct  954  GGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCA  1027

Query 1025  TCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGATCCACAAACTGAACAGA  1098
            |||||||||||||.||.|||.||||.||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1028  TCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGA  1101

Query 1099  GATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCTCCCCTTTCTGTGCCTCG  1172
            |||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.||||||||||||||||||||
Sbjct 1102  GATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCG  1175

Query 1173  CTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCACACTACCCCTCCCAGCCC  1246
            |||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.||||||||.||.||||||||||
Sbjct 1176  CTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCC  1249

Query 1247  GCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGAAAGTAGACACAAGAAAA  1320
            ||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||||||.||.||.||||||
Sbjct 1250  GCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAA  1323

Query 1321  TATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTGACCAACGAAAAGATGAG  1394
            ||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.||||||||.||.||||||||
Sbjct 1324  TACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAG  1397

Query 1395  CTCAGCCATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAG  1468
            ||||||..|||||||.|||||.||.|||.|.||||||.|||||||||||||.||||||||||||||||||||||
Sbjct 1398  CTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAG  1471

Query 1469  TGAAGAGGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTC  1542
            |||||||.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.||||||
Sbjct 1472  TGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTC  1545

Query 1543  TTGGAAGGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGA  1616
            |||||||||||.||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||
Sbjct 1546  TTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGA  1619

Query 1617  TTCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATG  1690
            ||||||.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.|
Sbjct 1620  TTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACG  1693

Query 1691  ATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGA  1764
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.
Sbjct 1694  ATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGC  1767

Query 1765  CGCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGA  1838
            |||||||||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768  CGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGA  1841

Query 1839  CGATACTGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA-----  1884
            .|||||.||.||||||||||||||||.||||                  ||||.|||||     |..||     
Sbjct 1842  TGATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCC  1915

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1916  TGAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGT  1989

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 1990  GAACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCC  2063

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2064  CAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACAC  2137

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2138  AAGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGG  2211

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2212  AGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAA  2285

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2286  AACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGTATA  2359

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2360  CTAGTCACAGCAAGCTCATCATGCCAGCCCCTTCATCTCTACCCCACCCCCGCCGAGCCCTGTCCCCTGAGATG  2433

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2434  CACGCCATCACCTCCGAGTGGATCTCTCTGACTGTCGGGGTCCCAGGCAGGCGTTCTCTGGCCATGACACCACC  2507

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2508  CTTGCCTCCTCTGCCTGAGGCTTCTGTCTATGACATGGACCGCCTGGCCTTGTCAGCAAGGGCCCGTCCCTCCT  2581

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2582  TGCCTCTCAGCCTCCCCTATTCAAGTTGGTCAGATCACTCCACCCTGCGCCCAGTGGTCTCCCCGATGGCCCTG  2655

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2656  CCTCCACCCCACAAAGCCTACTCACTGGCACCCAGTGTCCAGGCTCCTCTTCACGTCAATGGAGATGGTGGTAT  2729

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2730  TCACATTCGCCAAGATGGCTTCTCCCAGCCACCACCTGGGAACTCTGATAGGGTCATCTCAGAGCTTAGTGACG  2803

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2804  CCTTTAGCAGCCAGAGCAAGAGACAGCCCTGGCGAGAAGATGGACCATATGACAGGAAAGCAGAGAGCGAGGCA  2877

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2878  GGTGAGAGATACCCTGGTGGACCCAAGATCTCTAAGAAGAGCTGCTTGAAACCTTCAGACGTGGTCAGGTGCCT  2951

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2952  GAGTTCTGAGCAGAGACTCTCAGAGTTCCACACTCCTGAGGACAGTCAGTCCTGCAAGCCCCTGGGTGGCCCTT  3025

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3026  TCCCAGCCTGGGAGACTGGGCCACCAGAGCTGCACAGAGCTGTCGAGGCTGACAGGAAGGCTGCTCAGAGTGGT  3099

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3100  GTGAGCCAGCCTTCTCATCATTCATTGAGCGCAGGACCTGATCTCACAGAATCTGAAAAGAACTATGTGGAAGC  3173

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3174  GGTTTGCAATGAGATCATAAACATTGCGGAGAAATCTGTTCATTACTGCAGCACTGTCTCTCATCCCCTTGACT  3247

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3248  TCCATCACAAGGTACCCCCTTCTGACAATAAATCATCTTTAATCATTTCTCAGCAACCTCAAGCCCAGCAGCGA  3321

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3322  AGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACA  3395

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3396  GAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTG  3469

Query 1885  --------------------------------------------------------------------  1884
                                                                                
Sbjct 3470  TTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA  3537

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