Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11524
- Subject:
- XM_011247181.1
- Aligned Length:
- 5376
- Identities:
- 1294
- Gaps:
- 3897
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA--- 200
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 201 ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC 250
|.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct 297 AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC 370
Query 251 AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCC 324
|||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.||||||
Sbjct 371 AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGG----- 439
Query 325 ACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGA 398
Sbjct 440 -------------------------------------------------------------------------- 439
Query 399 AGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCG 472
Sbjct 440 -------------------------------------------------------------------------- 439
Query 473 CCTCACCTCTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAG 546
Sbjct 440 -------------------------------------------------------------------------- 439
Query 547 CCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGT 620
Sbjct 440 -------------------------------------------------------------------------- 439
Query 621 CCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCA 694
.||
Sbjct 440 -----------------------------------------------------------------------GCA 442
Query 695 GTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAG 765
|||||.|||||||.||||||||||||||||..||||.|||.||||||||||.||| ||||.|| ||||..
Sbjct 443 GTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGA 513
Query 766 CCTTCATCCGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCA 839
|||||.||.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.||||||||
Sbjct 514 CCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCG--------- 578
Query 840 AAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGG 913
||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|
Sbjct 579 ---------------------AGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAG 631
Query 914 AAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACT 987
.|.|||.|||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.
Sbjct 632 CAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACA 705
Query 988 CAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTA 1061
||||||.|.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.|||||||||||
Sbjct 706 CAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTA 779
Query 1062 CAAGACTATGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCAT 1135
|||.||||||||||||||||||||||||||||||||||||||||||||.|||.|..|.||.||..||||.||.|
Sbjct 780 CAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCT 853
Query 1136 TTTCTGAAGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAG 1209
|.|||||.||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.
Sbjct 854 TCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAA 927
Query 1210 GTAGTCAAGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGA 1283
||.||.||||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||
Sbjct 928 GTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGA 1001
Query 1284 CTGGGAACCCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGC 1357
||||||.|||||||||||||||||.||.||.||||||||.||.|||||||||||.|||||||||||||||||||
Sbjct 1002 CTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGC 1075
Query 1358 CTGGCAAGTCTTCCGTTCTGACCAACGAAAAGAT---------------------------------------- 1391
|.|||||||||||.||.||||||||.||.|||||
Sbjct 1076 CGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAAT 1149
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1150 GAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCC 1223
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1224 TGGAGACTGCTCTATCCTTCCTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAG 1297
Query 1392 ----------------------------------------------------------------GAGCTCAGCC 1401
|||||||||.
Sbjct 1298 AGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCA 1371
Query 1402 ATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAG 1475
.|||||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1372 GTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAG 1445
Query 1476 GGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAG 1549
.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||
Sbjct 1446 AGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAG 1519
Query 1550 GTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAA---------- 1613
||||.||||||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||
Sbjct 1520 GTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGTGGATCGT 1593
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1594 AAAGGCGGGAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGG 1667
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1668 CCCTGGGTGTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCA 1741
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1742 AACCCAGGCTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAG 1815
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1816 AGCTGTGAGAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGA 1889
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1890 GAACCTGCTCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCA 1963
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 1964 CCAGCTCCAGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCAC 2037
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2038 CAGATCAACCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGA 2111
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2112 AAGGAGCAGACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACA 2185
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2186 CCGTGTCCTCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCT 2259
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2260 GGCCGGCTGAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCT 2333
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2334 CCTCGAGTCTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGT 2407
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2408 GTAGCAATATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGAT 2481
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2482 GAGCTAGACCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCC 2555
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2556 CAAACATCGCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATG 2629
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2630 AGCAGCAGTCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATC 2703
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2704 CACCTGATGAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGA 2777
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2778 CTCCTCAGAGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGG 2851
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2852 GGAAACCCCTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCT 2925
Query 1614 -------------------------------------------------------------------------- 1613
Sbjct 2926 CTGGACAGACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCA 2999
Query 1614 ---------------------------------------------------AGATTCAGAATCGCCAAGACATT 1636
|||||||||.||.||||||||||
Sbjct 3000 TGGCTTGGACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAGATTCAGAGTCACCAAGACATT 3073
Query 1637 TTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTA 1710
||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.|||||||||||||||||||||
Sbjct 3074 TTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTA 3147
Query 1711 GCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCC 1784
||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.||
Sbjct 3148 GCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCC 3221
Query 1785 GACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAAT 1858
|||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||
Sbjct 3222 GACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAAT 3295
Query 1859 CTGGGTCAGAG------------------AAATATGACT-----GGGCA------------------------- 1884
||||||.|||| ||||.||||| |..||
Sbjct 3296 CTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAG 3369
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3370 AAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGG 3443
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3444 AATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTAC 3517
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3518 AAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGA 3591
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3592 AAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCG 3665
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3666 CCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCG 3739
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3740 ACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGTATACTAGTCACAGCAAGCTCATC 3813
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3814 ATGCCAGCCCCTTCATCTCTACCCCACCCCCGCCGAGCCCTGTCCCCTGAGATGCACGCCATCACCTCCGAGTG 3887
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3888 GATCTCTCTGACTGTCGGGGTCCCAGGCAGGCGTTCTCTGGCCATGACACCACCCTTGCCTCCTCTGCCTGAGG 3961
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3962 CTTCTGTCTATGACATGGACCGCCTGGCCTTGTCAGCAAGGGCCCGTCCCTCCTTGCCTCTCAGCCTCCCCTAT 4035
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4036 TCAAGTTGGTCAGATCACTCCACCCTGCGCCCAGTGGTCTCCCCGATGGCCCTGCCTCCACCCCACAAAGCCTA 4109
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4110 CTCACTGGCACCCAGTGTCCAGGCTCCTCTTCACGTCAATGGAGATGGTGGTATTCACATTCGCCAAGATGGCT 4183
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4184 TCTCCCAGCCACCACCTGGGAACTCTGATAGGGTCATCTCAGAGCTTAGTGACGCCTTTAGCAGCCAGAGCAAG 4257
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4258 AGACAGCCCTGGCGAGAAGATGGACCATATGACAGGAAAGCAGAGAGCGAGGCAGGTGAGAGATACCCTGGTGG 4331
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4332 ACCCAAGATCTCTAAGAAGAGCTGCTTGAAACCTTCAGACGTGGTCAGGTGCCTGAGTTCTGAGCAGAGACTCT 4405
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4406 CAGAGTTCCACACTCCTGAGGACAGTCAGTCCTGCAAGCCCCTGGGTGGCCCTTTCCCAGCCTGGGAGACTGGG 4479
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4480 CCACCAGAGCTGCACAGAGCTGTCGAGGCTGACAGGAAGGCTGCTCAGAGTGGTGTGAGCCAGCCTTCTCATCA 4553
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4554 TTCATTGAGCGCAGGACCTGATCTCACAGAATCTGAAAAGAACTATGTGGAAGCGGTTTGCAATGAGATCATAA 4627
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4628 ACATTGCGGAGAAATCTGTTCATTACTGCAGCACTGTCTCTCATCCCCTTGACTTCCATCACAAGGTACCCCCT 4701
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4702 TCTGACAATAAATCATCTTTAATCATTTCTCAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAG 4775
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4776 TCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAAC 4849
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 4850 TCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCGAGAAGGACG 4923
Query 1885 ------------------------------------------------ 1884
Sbjct 4924 AGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA 4971
