Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11524
- Subject:
- XM_011247185.1
- Aligned Length:
- 3834
- Identities:
- 1642
- Gaps:
- 1959
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA--- 200
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 201 ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC 250
|.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct 297 AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC 370
Query 251 AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCC-------- 316
|||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.|||
Sbjct 371 AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGTTCTG 444
Query 317 -------------------------------------------------------------------------- 316
Sbjct 445 TCTCCCCCATGCCTTCCTTTCCCTCAAGAGGACCGCTTCGCATGGCAGTCCCCCACTATCCACCGCAACTACAA 518
Query 317 -------------------------------------------------------------------------- 316
Sbjct 519 GGACTCCCTTTACATGAGTTCACCAAAACCCTATATCCCACCCAGCACCCCCAGCCAACAGAACCCCTCACTGC 592
Query 317 -------------------------------------------------------------------------- 316
Sbjct 593 CTACACCCACCTCTGTTCCCCTGGGAGCTAGGTTGGCTCCCCGAAATGCATCATGTCCCCGTTCATTACTTTTG 666
Query 317 -------------------------------------------------------------------------- 316
Sbjct 667 GGGTCCATGGGCCTTGAAGTGCCCTCCCAACCCCAGCAATACTATGTAGCCTCCCGATTAGTATACAGTAAGAA 740
Query 317 -------------------------------------------------------------------------- 316
Sbjct 741 TGTGAGCTCTAACACACGTTGTGAGGCCACAGGGAATAAACAGGTCAGCAGCTTATATGTCCCGTGTTTATCCA 814
Query 317 -------------------------------------------------------------------------- 316
Sbjct 815 ATAACATTTGCCGGGCATCATCGGAAAACTACCCTCCTGTTGCACGTGACTCGGCCCCAGACACTCCCTCGGAG 888
Query 317 -------------------------------------------------------------------------- 316
Sbjct 889 GCCGCAGGCACTCAGGCACCAGCTCCCTGCCTTGTCCCTGGCACAGCCACAGTTGGCACAGGAAAACCACCCCC 962
Query 317 -------------------------------------------------------------------------- 316
Sbjct 963 TGCTCCTCCTCCTGACCCTCCCAAGCTATTCTTTGACAACCGCAAAGATGACGGTAACCGCGGTGAGAATCACA 1036
Query 317 -------------------------------------------------------------------------- 316
Sbjct 1037 CACTGGGGACATGGGCCTCGTTCCCAGATGCAGTGAGGCCTCCCAGGCTAGGCCCCCAGGTTACCTCTGATCCC 1110
Query 317 ----------------------------------------------------AGGATGCCACTTCCTCCAGTGC 338
|||.||||||.||||||||..|
Sbjct 1111 GAAAACCAGAAGAACAAAGAAACTTACCTTTTGCAGCCGTGTTATCCAGCCAAGGGTGCCACCTCCTCCAGCTC 1184
Query 339 AGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTG 406
|||||.|.|.||||||||||||||.|||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1185 AGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTG 1258
Query 407 CCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCT 480
|||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||
Sbjct 1259 CCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCT 1332
Query 481 CTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCG 554
||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|
Sbjct 1333 CTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAG 1406
Query 555 CGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTG 628
.||.|.|||||||.|..||||...||||||||||.|||||.| |||||||||||||||||||||||||||.|
Sbjct 1407 TGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCG 1477
Query 629 CCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTA 702
.||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.||||||| .|||||||.||
Sbjct 1478 TCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTA 1548
Query 703 CTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATC 773
|||||.||||||||||||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||
Sbjct 1549 CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTC 1619
Query 774 CGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGAC 847
.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.||||
Sbjct 1620 TGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGAC 1693
Query 848 TCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCC 921
|||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|
Sbjct 1694 TCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTC 1767
Query 922 ACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTT 995
||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|
Sbjct 1768 ACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCT 1841
Query 996 AAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTA 1069
.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||
Sbjct 1842 GAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTA 1915
Query 1070 TGTTTAAACAGATCCACAAACTGAACAG---------------------------------------------- 1097
||||||||||||||||||||||||||||
Sbjct 1916 TGTTTAAACAGATCCACAAACTGAACAGAGACACTCCTGAGGAAAACCCTTATTTCCCTACGTACAAATTCCCC 1989
Query 1098 -------------------------------------------------------------------------- 1097
Sbjct 1990 GAGCTTCCAGAAATCCTGCAGAATTCTGAAGAGGACAGCTCTTACACTCCTACCTACCAGTTTCCTGCATCTAC 2063
Query 1098 ------------------AGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAAT 1153
||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.|
Sbjct 2064 GCCTAGTCCTAAGTCAGAAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGT 2137
Query 1154 CTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCC 1227
||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.|||
Sbjct 2138 CTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCC 2211
Query 1228 ACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAA 1301
|||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||
Sbjct 2212 ACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAA 2285
Query 1302 GAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTC 1375
||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.|
Sbjct 2286 GAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCC 2359
Query 1376 TGACCAACGAAAAGAT---------------------------------------------------------- 1391
|||||||.||.|||||
Sbjct 2360 TGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTC 2433
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 2434 TTTTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGAGACTGCTCTATCCT 2507
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 2508 TCCTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAG 2581
Query 1392 ----------------------------------------------GAGCTCAGCCATCAGCCCTACTCCGGAA 1419
|||||||||..|||||||.|||||.||.
Sbjct 2582 AGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCCGACTCCAGAC 2655
Query 1420 ATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCC 1493
|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||.|.||
Sbjct 2656 ATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCC 2729
Query 1494 TGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTC 1567
.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.|||||||||||||
Sbjct 2730 CGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTC 2803
Query 1568 AGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAATCGCCAAGACATTTTATA 1641
|||||||.|||||||||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||||||
Sbjct 2804 AGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCACCAAGACATTTTATA 2877
Query 1642 CCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGA 1715
|||||||||||||||||.|||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||
Sbjct 2878 CCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGA 2951
Query 1716 CCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGC 1789
|||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.|
Sbjct 2952 CCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTC 3025
Query 1790 ACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGG 1863
|.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.|||||||||||||||
Sbjct 3026 ATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGG 3099
Query 1864 TCAGAG------------------AAATATGACT-----GGGCA------------------------------ 1884
|.|||| ||||.||||| |..||
Sbjct 3100 TTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGG 3173
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3174 AGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCT 3247
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3248 TCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTT 3321
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3322 TTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGG 3395
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3396 GGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAG 3469
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3470 GCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTG 3543
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3544 CCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCAC 3617
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3618 CCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATG 3691
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3692 ATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACT 3765
Query 1885 ------------------------------------------------------------ 1884
Sbjct 3766 TCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA 3825
