Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11524
Subject:
XM_011247189.1
Aligned Length:
3630
Identities:
1642
Gaps:
1755

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAA-----------------------------------------------------------------------  74
            |||                                                                       
Sbjct   75  CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT  148

Query   75  -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC  129
                               |||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct  149  CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC  222

Query  130  TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA---  200
            ||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||   
Sbjct  223  TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC  296

Query  201  ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC  250
                                    |.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct  297  AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC  370

Query  251  AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCC--------  316
            |||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.|||        
Sbjct  371  AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGTTCTG  444

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  445  TCTCCCCCATGCCTTCCTTTCCCTCAAGAGGACCGCTTCGCATGGCAGTCCCCCACTATCCACCGCAACTACAA  518

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  519  GGACTCCCTTTACATGAGTTCACCAAAACCCTATATCCCACCCAGCACCCCCAGCCAACAGAACCCCTCACTGC  592

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  593  CTACACCCACCTCTGTTCCCCTGGGAGCTAGGTTGGCTCCCCGAAATGCATCATGTCCCCGTTCATTACTTTTG  666

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  667  GGGTCCATGGGCCTTGAAGTGCCCTCCCAACCCCAGCAATACTATGTAGCCTCCCGATTAGTATACAGTAAGAA  740

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  741  TGTGAGCTCTAACACACGTTGTGAGGCCACAGGGAATAAACAGGTCAGCAGCTTATATGTCCCGTGTTTATCCA  814

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  815  ATAACATTTGCCGGGCATCATCGGAAAACTACCCTCCTGTTGCACGTGACTCGGCCCCAGACACTCCCTCGGAG  888

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  889  GCCGCAGGCACTCAGGCACCAGCTCCCTGCCTTGTCCCTGGCACAGCCACAGTTGGCACAGGAAAACCACCCCC  962

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  963  TGCTCCTCCTCCTGACCCTCCCAAGCTATTCTTTGACAACCGCAAAGATGACGGTAACCGCGGTGAGAATCACA  1036

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct 1037  CACTGGGGACATGGGCCTCGTTCCCAGATGCAGTGAGGCCTCCCAGGCTAGGCCCCCAGGTTACCTCTGATCCC  1110

Query  317  ----------------------------------------------------AGGATGCCACTTCCTCCAGTGC  338
                                                                |||.||||||.||||||||..|
Sbjct 1111  GAAAACCAGAAGAACAAAGAAACTTACCTTTTGCAGCCGTGTTATCCAGCCAAGGGTGCCACCTCCTCCAGCTC  1184

Query  339  AGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTG  406
            |||||.|.|.||||||||||||||.||||||||||||||||||||||||||      |||||||||||||||||
Sbjct 1185  AGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTG  1258

Query  407  CCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCT  480
            |||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||
Sbjct 1259  CCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCT  1332

Query  481  CTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCG  554
            ||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|
Sbjct 1333  CTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAG  1406

Query  555  CGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTG  628
            .||.|.|||||||.|..||||...||||||||||.|||||.|   |||||||||||||||||||||||||||.|
Sbjct 1407  TGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCG  1477

Query  629  CCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTA  702
            .||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.|||||||   .|||||||.||
Sbjct 1478  TCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTA  1548

Query  703  CTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATC  773
            |||||.||||||||||||||||..||||.|||.||||||||||.|||   ||||.||   ||||..|||||.||
Sbjct 1549  CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTC  1619

Query  774  CGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGAC  847
            .|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.||||
Sbjct 1620  TGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGAC  1693

Query  848  TCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCC  921
            |||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|
Sbjct 1694  TCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTC  1767

Query  922  ACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTT  995
            ||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|
Sbjct 1768  ACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCT  1841

Query  996  AAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTA  1069
            .||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||
Sbjct 1842  GAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTA  1915

Query 1070  TGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAA  1143
            ||||||||||||||||||||||||||||||||||||||||.|||.|..|.||.||..||||.||.||.|||||.
Sbjct 1916  TGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGAC  1989

Query 1144  GACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAA  1217
            ||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||
Sbjct 1990  GACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAA  2063

Query 1218  GAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAAC  1291
            ||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|
Sbjct 2064  GAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGC  2137

Query 1292  CCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAG  1365
            ||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.||||||
Sbjct 2138  CCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAG  2211

Query 1366  TCTTCCGTTCTGACCAACGAAAAGAT------------------------------------------------  1391
            |||||.||.||||||||.||.|||||                                                
Sbjct 2212  TCTTCGGTCCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTG  2285

Query 1392  --------------------------------------------------------------------------  1391
                                                                                      
Sbjct 2286  GTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAG  2359

Query 1392  ----------------------------------------------------------------GAGCTCAGCC  1401
                                                                            |||||||||.
Sbjct 2360  AGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCA  2433

Query 1402  ATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAG  1475
            .|||||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||
Sbjct 2434  GTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAG  2507

Query 1476  GGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAG  1549
            .|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||
Sbjct 2508  AGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAG  2581

Query 1550  GTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAA  1623
            ||||.||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||.
Sbjct 2582  GTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAG  2655

Query 1624  TCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAA  1697
            ||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.||||||||
Sbjct 2656  TCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAA  2729

Query 1698  AGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACA  1771
            |||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||
Sbjct 2730  AGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACA  2803

Query 1772  CAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACT  1845
            ||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.
Sbjct 2804  CAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACG  2877

Query 1846  GCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA------------  1884
            ||.||||||||||||||||.||||                  ||||.|||||     |..||            
Sbjct 2878  GCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGA  2951

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2952  GCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACC  3025

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3026  ATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAG  3099

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3100  TTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGA  3173

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3174  AATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTC  3247

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3248  CTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCT  3321

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3322  GTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGC  3395

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3396  CCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTT  3469

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3470  ATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGAT  3543

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3544  GGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATA  3617

Query 1885  ----  1884
                
Sbjct 3618  TCTA  3621

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