Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11524
- Subject:
- XM_011247190.1
- Aligned Length:
- 3444
- Identities:
- 1642
- Gaps:
- 1569
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA--- 200
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 201 ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC 250
|.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct 297 AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC 370
Query 251 AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCC-------- 316
|||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.|||
Sbjct 371 AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGTTCTG 444
Query 317 -------------------------------------------------------------------------- 316
Sbjct 445 TCTCCCCCATGCCTTCCTTTCCCTCAAGAGGACCGCTTCGCATGGCAGTCCCCCACTATCCACCGCAACTACAA 518
Query 317 -------------------------------------------------------------------------- 316
Sbjct 519 GGACTCCCTTTACATGAGTTCACCAAAACCCTATATCCCACCCAGCACCCCCAGCCAACAGAACCCCTCACTGC 592
Query 317 -------------------------------------------------------------------------- 316
Sbjct 593 CTACACCCACCTCTGTTCCCCTGGGAGCTAGGTTGGCTCCCCGAAATGCATCATGTCCCCGTTCATTACTTTTG 666
Query 317 -------------------------------------------------------------------------- 316
Sbjct 667 GGGTCCATGGGCCTTGAAGTGCCCTCCCAACCCCAGCAATACTATGTAGCCTCCCGATTAGTATACAGTAAGAA 740
Query 317 -------------------------------------------------------------------------- 316
Sbjct 741 TGTGAGCTCTAACACACGTTGTGAGGCCACAGGGAATAAACAGGTCAGCAGCTTATATGTCCCGTGTTTATCCA 814
Query 317 -------------------------------------------------------------------------- 316
Sbjct 815 ATAACATTTGCCGGGCATCATCGGAAAACTACCCTCCTGTTGCACGTGACTCGGCCCCAGACACTCCCTCGGAG 888
Query 317 -------------------------------------------------------------------------- 316
Sbjct 889 GCCGCAGGCACTCAGGCACCAGCTCCCTGCCTTGTCCCTGGCACAGCCACAGTTGGCACAGGAAAACCACCCCC 962
Query 317 -------------------------------------------------------------------------- 316
Sbjct 963 TGCTCCTCCTCCTGACCCTCCCAAGCTATTCTTTGACAACCGCAAAGATGACGGTAACCGCGGTGAGAATCACA 1036
Query 317 -------------------------------------------------------------------------- 316
Sbjct 1037 CACTGGGGACATGGGCCTCGTTCCCAGATGCAGTGAGGCCTCCCAGGCTAGGCCCCCAGGTTACCTCTGATCCC 1110
Query 317 ----------------------------------------------------AGGATGCCACTTCCTCCAGTGC 338
|||.||||||.||||||||..|
Sbjct 1111 GAAAACCAGAAGAACAAAGAAACTTACCTTTTGCAGCCGTGTTATCCAGCCAAGGGTGCCACCTCCTCCAGCTC 1184
Query 339 AGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTG 406
|||||.|.|.||||||||||||||.|||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1185 AGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTG 1258
Query 407 CCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCT 480
|||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||
Sbjct 1259 CCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCT 1332
Query 481 CTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCG 554
||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|
Sbjct 1333 CTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAG 1406
Query 555 CGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTG 628
.||.|.|||||||.|..||||...||||||||||.|||||.| |||||||||||||||||||||||||||.|
Sbjct 1407 TGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCG 1477
Query 629 CCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTA 702
.||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.||||||| .|||||||.||
Sbjct 1478 TCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTA 1548
Query 703 CTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATC 773
|||||.||||||||||||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||
Sbjct 1549 CTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTC 1619
Query 774 CGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGAC 847
.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.||||
Sbjct 1620 TGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGAC 1693
Query 848 TCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCC 921
|||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|
Sbjct 1694 TCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTC 1767
Query 922 ACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTT 995
||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|
Sbjct 1768 ACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCT 1841
Query 996 AAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTA 1069
.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||
Sbjct 1842 GAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTA 1915
Query 1070 TGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAA 1143
||||||||||||||||||||||||||||||||||||||||.|||.|..|.||.||..||||.||.||.|||||.
Sbjct 1916 TGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGAC 1989
Query 1144 GACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAA 1217
||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||
Sbjct 1990 GACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAA 2063
Query 1218 GAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAAC 1291
||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|
Sbjct 2064 GAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGC 2137
Query 1292 CCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAG 1365
||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.||||||
Sbjct 2138 CCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAG 2211
Query 1366 TCTTCCGTTCTGACCAACGAAAAGATGAGCTCAGCCATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGG 1439
|||||.||.||||||||.||.||||||||||||||..|||||||.|||||.||.|||.|.||||||.|||||||
Sbjct 2212 TCTTCGGTCCTGACCAATGAGAAGATGAGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGG 2285
Query 1440 ATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGG 1513
||||||.|||||||||||||||||||||||||||||.|||||.||||||.|.||.||||.||||.|||||||||
Sbjct 2286 ATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGG 2359
Query 1514 AGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAG 1587
||||||||||.||.||.|||||.|||||||||||||||||.||||||||||||||||||||.||||||||||||
Sbjct 2360 AGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAG 2433
Query 1588 CGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATC 1661
|||||.||||||||.||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.||
Sbjct 2434 CGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTC 2507
Query 1662 CACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCG 1735
|||.||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 2508 CACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCG 2581
Query 1736 AGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAAT 1809
|||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.||.||||||||||||||||||
Sbjct 2582 AGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAAT 2655
Query 1810 GAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTCAGAG-------------- 1869
|||||||||||||||||||||||||||||.|||||.||.||||||||||||||||.||||
Sbjct 2656 GAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCG 2729
Query 1870 ----AAATATGACT-----GGGCA-------------------------------------------------- 1884
||||.||||| |..||
Sbjct 2730 AGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACA 2803
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2804 GACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAG 2877
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2878 CTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCAT 2951
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2952 TGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCC 3025
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3026 GACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTAT 3099
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3100 GTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAG 3173
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3174 TCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCT 3247
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3248 CACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGAT 3321
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3322 GGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTT 3395
Query 1885 ---------------------------------------- 1884
Sbjct 3396 TGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA 3435
