Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11524
Subject:
XM_011247193.1
Aligned Length:
3783
Identities:
1642
Gaps:
1908

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAA-----------------------------------------------------------------------  74
            |||                                                                       
Sbjct   75  CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT  148

Query   75  -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC  129
                               |||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct  149  CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC  222

Query  130  TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA---  200
            ||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||   
Sbjct  223  TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC  296

Query  201  ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC  250
                                    |.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct  297  AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC  370

Query  251  AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCC  324
            |||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.||||||.||||
Sbjct  371  AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCC  444

Query  325  ACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGG  392
            ||.||||||||..||||||.|.|.||||||||||||||.||||||||||||||||||||||||||      |||
Sbjct  445  ACCTCCTCCAGCTCAGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGG  518

Query  393  GCAAGAAGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCT  466
            |||||||||||||||||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.
Sbjct  519  GCAAGAAGGCACTGCCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCC  592

Query  467  CTGCCGCCTCACCTCTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCAC  540
            ||||.|||||||||||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||
Sbjct  593  CTGCTGCCTCACCTCTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCAC  666

Query  541  AGCCAGCCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCC  614
            ||||||||||||.|.||.|.|||||||.|..||||...||||||||||.|||||.|   |||||||||||||||
Sbjct  667  AGCCAGCCAGCCAGTGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCC  737

Query  615  GCTGGTCCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCG  688
            ||||||||||||.|.||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.|||||||
Sbjct  738  GCTGGTCCCTCCCGTCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG  811

Query  689  ATTCCAGTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTT  759
               .|||||||.|||||||.||||||||||||||||..||||.|||.||||||||||.|||   ||||.||   
Sbjct  812  ---GCAGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---  879

Query  760  AGCAAGCCTTCATCCGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGA  833
            ||||..|||||.||.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||
Sbjct  880  AGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGA  953

Query  834  ACAGCAAAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAA  907
            .||||||||.|||||||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.|||||
Sbjct  954  GCAGCAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAA  1027

Query  908  CCCAGGAAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAG  981
            |||..|.|.|||.|||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.|
Sbjct 1028  CCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGG  1101

Query  982  AGCACTCAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGA  1055
            |||||.||||||.|.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.|||||
Sbjct 1102  AGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGA  1175

Query 1056  CTGGTACAAGACTATGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGAT  1129
            |||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||.|..|.||.||..|||
Sbjct 1176  CTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGAT  1249

Query 1130  ACTCATTTTCTGAAGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGT  1203
            |.||.||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.
Sbjct 1250  ATTCCTTCTCTGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGG  1323

Query 1204  GAGAAGGTAGTCAAGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAG  1277
            |||||.||.||.||||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.|||||
Sbjct 1324  GAGAAAGTGGTTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAG  1397

Query 1278  AAATGACTGGGAACCCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAAT  1351
            |||.||||||||.|||||||||||||||||.||.||.||||||||.||.|||||||||||.|||||||||||||
Sbjct 1398  AAACGACTGGGAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAAT  1471

Query 1352  ATCAGCCTGGCAAGTCTTCCGTTCTGACCAACGAAAAGAT----------------------------------  1391
            |||||||.|||||||||||.||.||||||||.||.|||||                                  
Sbjct 1472  ATCAGCCGGGCAAGTCTTCGGTCCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTA  1545

Query 1392  --------------------------------------------------------------------------  1391
                                                                                      
Sbjct 1546  AAGAATGAACCTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTA  1619

Query 1392  --------------------------------------------------------------------------  1391
                                                                                      
Sbjct 1620  TACTCCTGGAGACTGCTCTATCCTTCCTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCC  1693

Query 1392  ----------------------------------------------------------------------GAGC  1395
                                                                                  ||||
Sbjct 1694  AAGCAGAGTTAGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGC  1767

Query 1396  TCAGCCATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGT  1469
            |||||..|||||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct 1768  TCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGT  1841

Query 1470  GAAGAGGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCT  1543
            ||||||.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||
Sbjct 1842  GAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCT  1915

Query 1544  TGGAAGGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGAT  1617
            ||||||||||.||||||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||||||
Sbjct 1916  TGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGAT  1989

Query 1618  TCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGA  1691
            |||||.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.||
Sbjct 1990  TCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGA  2063

Query 1692  TGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGAC  1765
            |||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|
Sbjct 2064  TGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCC  2137

Query 1766  GCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGAC  1839
            ||||||||||.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 2138  GCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGAT  2211

Query 1840  GATACTGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA------  1884
            |||||.||.||||||||||||||||.||||                  ||||.|||||     |..||      
Sbjct 2212  GATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCT  2285

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2286  GAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTG  2359

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2360  AACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCC  2433

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2434  AGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACA  2507

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2508  AGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGA  2581

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2582  GGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAA  2655

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2656  ACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGTATAC  2729

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2730  TAGTCACAGCAAGCTCATCATGCCAGCCCCTTCATCTCTACCCCACCCCCGCCGAGCCCTGTCCCCTGAGATGC  2803

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2804  ACGCCATCACCTCCGAGTGGATCTCTCTGACTGTCGGGGTCCCAGGCAGGCGTTCTCTGGCCATGACACCACCC  2877

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2878  TTGCCTCCTCTGCCTGAGGCTTCTGTCTATGACATGGACCGCCTGGCCTTGTCAGCAAGGGCCCGTCCCTCCTT  2951

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2952  GCCTCTCAGCCTCCCCTATTCAAGTTGGTCAGATCACTCCACCCTGCGCCCAGTGGTCTCCCCGATGGCCCTGC  3025

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3026  CTCCACCCCACAAAGCCTACTCACTGGCACCCAGTGTCCAGGCTCCTCTTCACGTCAATGGAGATGGTGGTATT  3099

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3100  CACATTCGCCAAGATGGCTTCTCCCAGCCACCACCTGGGAACTCTGATAGGGTCATCTCAGAGCTTAGTGACGC  3173

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3174  CTTTAGCAGCCAGAGCAAGAGACAGCCCTGGCGAGAAGATGGACCATATGACAGGAAAGCAGAGAGCGAGGCAG  3247

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3248  GTGAGAGATACCCTGGTGGACCCAAGATCTCTAAGAAGAGCTGCTTGAAACCTTCAGACGTGGTCAGGTGCCTG  3321

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3322  AGTTCTGAGCAGAGACTCTCAGAGTTCCACACTCCTGAGGACAGTCAGTCCTGCAAGCCCCTGGGTGGCCCTTT  3395

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3396  CCCAGCCTGGGAGACTGGGCCACCAGAGCTGCACAGAGCTGTCGAGGCTGACAGGAAGGCTGCTCAGAGTGGTG  3469

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3470  TGAGCCAGCCTTCTCATCATTCATTGAGCGCAGGACCTGATCTCACAGAATCTGAAAAGAACTATGTGCAACCT  3543

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3544  CAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATA  3617

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3618  TAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTG  3691

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3692  ACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCT  3765

Query 1885  ---------  1884
                     
Sbjct 3766  TTATATCTA  3774

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