Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11524
Subject:
XM_011247198.1
Aligned Length:
3354
Identities:
1642
Gaps:
1479

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG  145
            ||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct   75  CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG  148

Query  146  AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA-------------------  200
            .||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||                   
Sbjct  149  GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGCCTGGAGCCAGAG  222

Query  201  --------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGC  266
                    |.|||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.||
Sbjct  223  GACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGC  296

Query  267  TGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCC------------------------  316
            ||||||||||||.||||||||||||||||.||||.||.||||||||.|||                        
Sbjct  297  TGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGTTCTGTCTCCCCCATGCCTTC  370

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  371  CTTTCCCTCAAGAGGACCGCTTCGCATGGCAGTCCCCCACTATCCACCGCAACTACAAGGACTCCCTTTACATG  444

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  445  AGTTCACCAAAACCCTATATCCCACCCAGCACCCCCAGCCAACAGAACCCCTCACTGCCTACACCCACCTCTGT  518

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  519  TCCCCTGGGAGCTAGGTTGGCTCCCCGAAATGCATCATGTCCCCGTTCATTACTTTTGGGGTCCATGGGCCTTG  592

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  593  AAGTGCCCTCCCAACCCCAGCAATACTATGTAGCCTCCCGATTAGTATACAGTAAGAATGTGAGCTCTAACACA  666

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  667  CGTTGTGAGGCCACAGGGAATAAACAGGTCAGCAGCTTATATGTCCCGTGTTTATCCAATAACATTTGCCGGGC  740

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  741  ATCATCGGAAAACTACCCTCCTGTTGCACGTGACTCGGCCCCAGACACTCCCTCGGAGGCCGCAGGCACTCAGG  814

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  815  CACCAGCTCCCTGCCTTGTCCCTGGCACAGCCACAGTTGGCACAGGAAAACCACCCCCTGCTCCTCCTCCTGAC  888

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  889  CCTCCCAAGCTATTCTTTGACAACCGCAAAGATGACGGTAACCGCGGTGAGAATCACACACTGGGGACATGGGC  962

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  963  CTCGTTCCCAGATGCAGTGAGGCCTCCCAGGCTAGGCCCCCAGGTTACCTCTGATCCCGAAAACCAGAAGAACA  1036

Query  317  ------------------------------------AGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAGGTA  354
                                                |||.||||||.||||||||..||||||.|.|.||||||
Sbjct 1037  AAGAAACTTACCTTTTGCAGCCGTGTTATCCAGCCAAGGGTGCCACCTCCTCCAGCTCAGCCCCGTCTGAGGTA  1110

Query  355  ATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTGCCAGACCTCCAACACC  422
            ||||||||.||||||||||||||||||||||||||      ||||||||||||||||||||||.|||||.||.|
Sbjct 1111  ATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCCAGAACTCCAGCATC  1184

Query  423  TCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGACTC  496
            |||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||||||||||||||||.|
Sbjct 1185  TCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTCTGACCTTCCCGACAC  1258

Query  497  TAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCCTTT  570
            |.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|.||.|.|||||||.|.
Sbjct 1259  TCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAGTGCTTGTGGCTCCCTC  1332

Query  571  GCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCTCCG  644
            .||||...||||||||||.|||||.|   |||||||||||||||||||||||||||.|.||||||||||||||.
Sbjct 1333  TCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCGTCCCGGAGGACCTCCA  1403

Query  645  CAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTTCTT  718
            |||||.|..|||||||||||||.||||||||||.||.|||||||   .|||||||.|||||||.||||||||||
Sbjct 1404  CAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTACTAAACGAAGTTTCTT  1474

Query  719  CTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCCACA  789
            ||||||..||||.|||.||||||||||.|||   ||||.||   ||||..|||||.||.|||||.||||||||.
Sbjct 1475  CTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCCACC  1545

Query  790  ACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTCAGA  863
            ||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.|||||||||||.||||||||
Sbjct 1546  ACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTCAGA  1619

Query  864  TCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCAAGG  937
            |||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||.||
Sbjct 1620  TCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGG  1693

Query  938  CTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCCATG  1011
            ||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.|..
Sbjct 1694  CTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACA  1767

Query 1012  GATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGATCCA  1085
            ||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||||||||||||||||||
Sbjct 1768  GATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCA  1841

Query 1086  CAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCTCCCC  1159
            ||||||||||||||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.|||||||
Sbjct 1842  CAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCTCCCC  1915

Query 1160  TTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCACACTA  1233
            ||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.||||||||.
Sbjct 1916  TTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTC  1989

Query 1234  CCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGAAAGT  1307
            ||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||||||
Sbjct 1990  CCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGAAAGT  2063

Query 1308  AGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTGACCA  1381
            .||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.|||||||
Sbjct 2064  GGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCA  2137

Query 1382  ACGAAAAGATGAGCTCAGCCATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCC  1455
            |.||.||||||||||||||..|||||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||
Sbjct 2138  ATGAGAAGATGAGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCC  2211

Query 1456  AACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAAT  1529
            ||||||||||||||||||||.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||
Sbjct 2212  AACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGAT  2285

Query 1530  TTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTG  1603
            .|||||.|||||||||||||||||.||||||||||||||||||||.|||||||||||||||||.||||||||.|
Sbjct 2286  CTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAG  2359

Query 1604  CTTCCACTAAAGATTCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATT  1677
            |||||||||||||||||||.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||
Sbjct 2360  CTTCCACTAAAGATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATT  2433

Query 1678  CGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGA  1751
            ||.|||||.||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 2434  CGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGA  2507

Query 1752  TATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACC  1825
            ||||||||||||.|||||||||||.|||||.|||||.||.||||||||||||||||||||||||||||||||||
Sbjct 2508  TATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACC  2581

Query 1826  TCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT--  1879
            |||||||||||||.|||||.||.||||||||||||||||.||||                  ||||.|||||  
Sbjct 2582  TCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTT  2655

Query 1880  ---GGGCA------------------------------------------------------------------  1884
               |..||                                                                  
Sbjct 2656  AAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAA  2729

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2730  CTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTG  2803

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2804  AGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTT  2877

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2878  AATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAA  2951

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2952  CTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGA  3025

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3026  GGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTG  3099

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3100  AGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAG  3173

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3174  CTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATG  3247

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3248  TCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGC  3321

Query 1885  ------------------------  1884
                                    
Sbjct 3322  AACTATGTAAAACCTTTATATCTA  3345

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