Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11524
- Subject:
- XM_011247198.1
- Aligned Length:
- 3354
- Identities:
- 1642
- Gaps:
- 1479
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG 145
||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct 75 CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG 148
Query 146 AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA------------------- 200
.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 149 GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGCCTGGAGCCAGAG 222
Query 201 --------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGC 266
|.|||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.||
Sbjct 223 GACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGC 296
Query 267 TGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCC------------------------ 316
||||||||||||.||||||||||||||||.||||.||.||||||||.|||
Sbjct 297 TGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGTTCTGTCTCCCCCATGCCTTC 370
Query 317 -------------------------------------------------------------------------- 316
Sbjct 371 CTTTCCCTCAAGAGGACCGCTTCGCATGGCAGTCCCCCACTATCCACCGCAACTACAAGGACTCCCTTTACATG 444
Query 317 -------------------------------------------------------------------------- 316
Sbjct 445 AGTTCACCAAAACCCTATATCCCACCCAGCACCCCCAGCCAACAGAACCCCTCACTGCCTACACCCACCTCTGT 518
Query 317 -------------------------------------------------------------------------- 316
Sbjct 519 TCCCCTGGGAGCTAGGTTGGCTCCCCGAAATGCATCATGTCCCCGTTCATTACTTTTGGGGTCCATGGGCCTTG 592
Query 317 -------------------------------------------------------------------------- 316
Sbjct 593 AAGTGCCCTCCCAACCCCAGCAATACTATGTAGCCTCCCGATTAGTATACAGTAAGAATGTGAGCTCTAACACA 666
Query 317 -------------------------------------------------------------------------- 316
Sbjct 667 CGTTGTGAGGCCACAGGGAATAAACAGGTCAGCAGCTTATATGTCCCGTGTTTATCCAATAACATTTGCCGGGC 740
Query 317 -------------------------------------------------------------------------- 316
Sbjct 741 ATCATCGGAAAACTACCCTCCTGTTGCACGTGACTCGGCCCCAGACACTCCCTCGGAGGCCGCAGGCACTCAGG 814
Query 317 -------------------------------------------------------------------------- 316
Sbjct 815 CACCAGCTCCCTGCCTTGTCCCTGGCACAGCCACAGTTGGCACAGGAAAACCACCCCCTGCTCCTCCTCCTGAC 888
Query 317 -------------------------------------------------------------------------- 316
Sbjct 889 CCTCCCAAGCTATTCTTTGACAACCGCAAAGATGACGGTAACCGCGGTGAGAATCACACACTGGGGACATGGGC 962
Query 317 -------------------------------------------------------------------------- 316
Sbjct 963 CTCGTTCCCAGATGCAGTGAGGCCTCCCAGGCTAGGCCCCCAGGTTACCTCTGATCCCGAAAACCAGAAGAACA 1036
Query 317 ------------------------------------AGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAGGTA 354
|||.||||||.||||||||..||||||.|.|.||||||
Sbjct 1037 AAGAAACTTACCTTTTGCAGCCGTGTTATCCAGCCAAGGGTGCCACCTCCTCCAGCTCAGCCCCGTCTGAGGTA 1110
Query 355 ATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTGCCAGACCTCCAACACC 422
||||||||.|||||||||||||||||||||||||| ||||||||||||||||||||||.|||||.||.|
Sbjct 1111 ATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCCAGAACTCCAGCATC 1184
Query 423 TCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGACTC 496
|||||||||.|||||||||||||.|||..||||.|||||..||.||||.|||||||||||||||||||||||.|
Sbjct 1185 TCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTCTGACCTTCCCGACAC 1258
Query 497 TAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCCTTT 570
|.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|.||.|.|||||||.|.
Sbjct 1259 TCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAGTGCTTGTGGCTCCCTC 1332
Query 571 GCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCTCCG 644
.||||...||||||||||.|||||.| |||||||||||||||||||||||||||.|.||||||||||||||.
Sbjct 1333 TCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCGTCCCGGAGGACCTCCA 1403
Query 645 CAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTTCTT 718
|||||.|..|||||||||||||.||||||||||.||.||||||| .|||||||.|||||||.||||||||||
Sbjct 1404 CAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTACTAAACGAAGTTTCTT 1474
Query 719 CTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCCACA 789
||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||.|||||.||||||||.
Sbjct 1475 CTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCCACC 1545
Query 790 ACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTCAGA 863
||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.|||||||||||.||||||||
Sbjct 1546 ACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTCAGA 1619
Query 864 TCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCAAGG 937
|||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||.||
Sbjct 1620 TCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCAGGG 1693
Query 938 CTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCCATG 1011
||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.|..
Sbjct 1694 CTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCTACA 1767
Query 1012 GATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGATCCA 1085
||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||||||||||||||||||
Sbjct 1768 GATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGATCCA 1841
Query 1086 CAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCTCCCC 1159
||||||||||||||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.|||||||
Sbjct 1842 CAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCTCCCC 1915
Query 1160 TTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCACACTA 1233
||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.||||||||.
Sbjct 1916 TTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCACACTC 1989
Query 1234 CCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGAAAGT 1307
||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||||||
Sbjct 1990 CCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGAAAGT 2063
Query 1308 AGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTGACCA 1381
.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.|||||||
Sbjct 2064 GGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTGACCA 2137
Query 1382 ACGAAAAGATGAGCTCAGCCATCAGCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCC 1455
|.||.||||||||||||||..|||||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||
Sbjct 2138 ATGAGAAGATGAGCTCAGCAGTCAGCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCC 2211
Query 1456 AACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAAT 1529
||||||||||||||||||||.|||||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||
Sbjct 2212 AACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGAT 2285
Query 1530 TTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTG 1603
.|||||.|||||||||||||||||.||||||||||||||||||||.|||||||||||||||||.||||||||.|
Sbjct 2286 CTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAG 2359
Query 1604 CTTCCACTAAAGATTCAGAATCGCCAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATT 1677
|||||||||||||||||||.||.||||||||||||||||||||||||||||||||.|||||.||||||||||||
Sbjct 2360 CTTCCACTAAAGATTCAGAGTCACCAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATT 2433
Query 1678 CGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGA 1751
||.|||||.||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||
Sbjct 2434 CGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGA 2507
Query 1752 TATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACC 1825
||||||||||||.|||||||||||.|||||.|||||.||.||||||||||||||||||||||||||||||||||
Sbjct 2508 TATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACC 2581
Query 1826 TCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTCAGAG------------------AAATATGACT-- 1879
|||||||||||||.|||||.||.||||||||||||||||.|||| ||||.|||||
Sbjct 2582 TCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTT 2655
Query 1880 ---GGGCA------------------------------------------------------------------ 1884
|..||
Sbjct 2656 AAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAA 2729
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2730 CTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTG 2803
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2804 AGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTT 2877
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2878 AATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAA 2951
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2952 CTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGA 3025
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3026 GGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTG 3099
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3100 AGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAG 3173
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3174 CTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATG 3247
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3248 TCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGC 3321
Query 1885 ------------------------ 1884
Sbjct 3322 AACTATGTAAAACCTTTATATCTA 3345
