Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11612
Subject:
NR_147257.1
Aligned Length:
2628
Identities:
1674
Gaps:
778

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTCCCCCGGTTTCCCTGGAGACCAGGCGGAAGCGGCCGGAAGTAGCGCTGCGGTTGGCAGCGGCGGGATGGAG  74

Query    1  ---------------------------------------------------------------------ATGGA  5
                                                                                 |||||
Sbjct   75  AAGCTGGGGGTGGAGCCGGAGGAGGAAGGCGGCGGCGACGACGACGAGGAAGACGCCGAGGCCTGGGCCATGGA  148

Query    6  ACTGGCGGACGTGGGGGCGGCAGCCAGCTCGCAGGGAGTTCATGATCAAGTGTTGCCCACACCAAATGCTTCAT  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ACTGGCGGACGTGGGGGCGGCAGCCAGCTCGCAGGGAGTTCATGATCAAGTGTTGCCCACACCAAATGCTTCAT  222

Query   80  CCAGAGTCATAGTACATGTGGATCTGGATTGCTTTTATGCACAAGTAGAAATGATCTCAAATCCAGAGCTAAAA  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCAGAGTCATAGTACATGTGGATCTGGATTGCTTTTATGCACAAGTAGAAATGATCTCAAATCCAGAGCTAAAA  296

Query  154  GACAAACCTTTAGGGGTTCAACAGAAATATTTGGTGGTTACCTGCAACTATGAAGCTAGGAAACTTGGAGTTAA  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GACAAACCTTTAGGGGTTCAACAGAAATATTTGGTGGTTACCTGCAACTATGAAGCTAGGAAACTTGGAGTTAA  370

Query  228  GAAACTTATGAATGTCAGAGATGCAAAAGAAAAGTGTCCACAGTTGGTATTAGTTAATGGAGAAGACCTGACCC  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAAACTTATGAATGTCAGAGATGCAAAAGAAAAGTGTCCACAGTTGGTATTAGTTAATGGAGAAGACCTGACCC  444

Query  302  GCTACAGAGAAATGTCTTATAAGGTTACAGAATTACTGGAAGAATTTAGTCCAGTTGTTGAGAGACTTGGATTT  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCTACAGAGAAATGTCTTATAAGGTTACAGAATTACTGGAAGAATTTAGTCCAGTTGTTGAGAGACTTGGATTT  518

Query  376  GATGAAAATTTTGTGGATCTAACAGAAATGGTTGAGAAGAGACTACAGCAGCTGCAAAGTGATGAACTTTCTGC  449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATGAAAATTTTGTGGATCTAACAGAAATGGTTGAGAAGAGACTACAGCAGCTGCAAAGTGATGAACTTTCTGC  592

Query  450  GGTGACTGTGTCGGGTCATGTATACAATAATCAGTCTATAAACCTGCTTGACGTCTTGCACATCAGACTACTTG  523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GGTGACTGTGTCGGGTCATGTATACAATAATCAGTCTATAAACCTGCTTGACGTCTTGCACATCAGACTACTTG  666

Query  524  TTGGATCTCAGATTGCAGCAGAGATGCGGGAAGCCATGTATAATCAGTTGGGGCTCACTGGCTGTGCTGGAGTG  597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTGGATCTCAGATTGCAGCAGAGATGCGGGAAGCCATGTATAATCAGTTGGGGCTCACTGGCTGTGCTGGAGTG  740

Query  598  GCTTCTAATAAACTGTTGGCAAAATTAGTTTCTGGTGTCTTTAAACCAAATCAACAAACAGTCTTATTACCTGA  671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GCTTCTAATAAACTGTTGGCAAAATTAGTTTCTGGTGTCTTTAAACCAAATCAACAAACAGTCTTATTACCTGA  814

Query  672  AAGTTGTCAACATCTTATTCATAGTTTGAATCACATAAAGGAAATACCTGGTATTGGCTATAAAACTGCCAAAT  745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AAGTTGTCAACATCTTATTCATAGTTTGAATCACATAAAGGAAATACCTGGTATTGGCTATAAAACTGCCAAAT  888

Query  746  GTCTTGAAGCACTGGGTATCAATAGTGTGCGTGATCTCCAAACCTTTTCACCCAAAATTTTAGAAAAAGAATTA  819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTCTTGAAGCACTGGGTATCAATAGTGTGCGTGATCTCCAAACCTTTTCACCCAAAATTTTAGAAAAAGAATTA  962

Query  820  GGAATTTCAGTTGCTCAGCGTATCCAAAAGCTCAGTTTTGGAGAGGATAACTCCCCTGTGATACTCTCAGGACC  893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAATTTCAGTTGCTCAGCGTATCCAAAAGCTCAGTTTTGGAGAGGATAACTCCCCTGTGATACTCTCAGGACC  1036

Query  894  ACCTC---------------------------------------------------------------------  898
            |||||                                                                     
Sbjct 1037  ACCTCAGTGAGTACAATAGCTTGCAGATAAAAAACTGTTAATATAAAAGTGAACTAAATGGCTCAAACTAAGGA  1110

Query  899  ----AGTCCTTTAGTGAAGAAGATTCATTTAAAAAATGTTCATCTGAAGTTGAAGCTAAAAATAAGATTGAAGA  968
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAAGAGTCCTTTAGTGAAGAAGATTCATTTAAAAAATGTTCATCTGAAGTTGAAGCTAAAAATAAGATTGAAGA  1184

Query  969  ACTACTTGCTAGTCTTTTAAACAGAGTATGCCAAGATGGAAGGAAGCCTCATACAGTGAGATTAATAATCCGTC  1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ACTACTTGCTAGTCTTTTAAACAGAGTATGCCAAGATGGAAGGAAGCCTCATACAGTGAGATTAATAATCCGTC  1258

Query 1043  GGTATTCCTCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTATTCCTTCACATGTAATTCAGAAATTA  1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GGTATTCCTCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTATTCCTTCACATGTAATTCAGAAATTA  1332

Query 1117  GGGACAGG------------AAATTATGATGTG-----------ATGACCCCAA-------TGGTTGATATACT  1160
            ||||||||            |.||  |..||||           |||    |||       |||..||.|.|||
Sbjct 1333  GGGACAGGTCTCCAGTCCCCAGAT--TTCTGTGCATCCTCTCTCATG----CAAAGAAGGCTGGAAGACAAACT  1400

Query 1161  TATGAAAC----------TTTTTCGAAATATGGTGAATG--------TGAAGATGCCATTTCACCTTACCCTTC  1216
            |.||||.|          ||||.|.|||.|  .|.||.|        |.|||..|   ||||            
Sbjct 1401  TGTGAAGCTAGAGGGTGTTTTTACTAAACA--CTAAAGGAGTTTTACTAAAGGAG---TTTC------------  1457

Query 1217  TAAGTGTGTGCTTCTGCAACCTT--AAAGCACTAAATACTGCTA---AGAAAGGGCTTATTGAT-TAT-----T  1279
             |||||.|||         ||.|  ||||..||||.||.|..||   ||||.||   ||||..| |||     |
Sbjct 1458  -AAGTGAGTG---------CCATGAAAAGACCTAATTATTCTTAAGGAGAATGG---TATTTCTGTATGTTCCT  1518

Query 1280  A---TTTAA---TGCCATCAT-----TATCAACTACTTCACGCTCTG-GCAAG-CACAGTTTTAAAA-------  1333
            |   ||.||   ||.||..||     |||.||  .|.||| |..||| .|||| ||||.||..||||       
Sbjct 1519  ACACTTGAATTTTGACAATATTTTTCTATGAA--GCATCA-GAGCTGTTCAAGCCACAATTCCAAAAGGGTGTG  1589

Query 1334  --------------TGAAAGACACTCATATGGAA---------GATTTT-------CCCAAAGACAAAGA----  1373
                          |||.|.|.|.|..|.|.|||         |.||||       .|.|||.|..||.|    
Sbjct 1590  TGCTTTTTTAGATTTGATACATAATATTTTTGAATAAAAGTAGGCTTTTTGCTGGGGCTAAATATTAATATTCT  1663

Query 1374  --AACAAACCGGGATTTCCTA-CCA-AGTGGAAGAATTGAAAGTACAAGA-----ACTAGGGAGTCTCCACTAG  1438
              |||||.|     .||||.| ||| ||       |.|||.|.|||||.|     ||||.||            
Sbjct 1664  TTAACAATC-----ATTCCAATCCATAG-------AGTGAGATTACAAAATCTTTACTAAGG------------  1713

Query 1439  ATACCACAAATT-TTTCTAAAG---------AAAAAGACATTAAT---GAATTCCCACTCTGTTCACT------  1493
                   ||||| .||.|||||         |||.|.|.||||||   |.|..|.||     ||.|||      
Sbjct 1714  -------AAATTGCTTGTAAAGTGTAATGTCAAACAAATATTAATAACGTAAACACA-----TTAACTATATAT  1775

Query 1494  -------TCCTGAAGGT------GTTGACCAA-GAAGTCTTCAAGCA---GCT-TCCAGTA-GATATTCAAG--  1546
                   |..|||  ||      ||.||..|| |||      ||.||   ||| ||.|.|| |||||   ||  
Sbjct 1776  TGGTAAATAATGA--GTGATATGGTAGATAAATGAA------AAACAAATGCTATCGATTATGATAT---AGTT  1838

Query 1547  ----AAGAAATCCTTT------CTGGAAAATCTAGGGAAAAATTTCAA--------GGGAAAGGAAGTGTGAG-  1601
                |.||.||.||||      .||||.|..||         ||||.|        ...|||...|.|.|||| 
Sbjct 1839  TTTAATGACATTCTTTTTTGGCTTGGATAGGCT---------TTTCTATTTTTTTTTTTAAACTTATTTTGAGA  1903

Query 1602  ---TTGTCCA-TTACATGCCTCTAGAGGAGTATTATCTTTCTTTTCTAAAAAACAAATGCAAGATATTCCCATA  1671
               ||||..| ||.|||||    ||                ||||..||||.|..|||.||..|||     |||
Sbjct 1904  TAATTGTAGATTTGCATGC----AG----------------TTTTGAAAAATAATAATACATAATA-----ATA  1952

Query 1672  AATCCTAGAGAT--CATTTATCCAGTAGCAAACAGGTATCCTCTGTATCTCCTTGTGAACC--GGGAACATCAG  1741
            |..||   |.||  |.||||||||                    ||.|||||       ||  ||.||.||   
Sbjct 1953  ATACC---ATATTCCCTTTATCCA--------------------GTTTCTCC-------CCATGGTAATAT---  1993

Query 1742  GCTTTAATAGCAGTAGTTCT-TCTTACATGTCTAGCCAAAAGGATTATTCAT-------------ATTATTTAG  1801
             |||..|||.|...|||.|| |.|.|||  .|||| .||||.|| .|||.||             |||||||||
Sbjct 1994  -CTTGCATACCTACAGTACTGTATCACA--ACTAG-GAAAATGA-CATTGATACTACCCGCTGCCATTATTTAG  2062

Query 1802  ATAAT---AGATTAAAAGATGAACGAATAAGTCAAGGACCTAAAGAACCTCAAGGATTCCACTTTA--CA----  1866
            |||.|   ||.||  .|.|||.||       |||                            ||||  ||    
Sbjct 2063  ATACTACCAGTTT--TACATGCAC-------TCA----------------------------TTTATGCATGTG  2099

Query 1867  ----AATTCAAACCCTGCTG------TGTCTGCTTTTCATTCATTT--CCAAACTTGCAGAGTGAGCAAC----  1924
                |||||.|    |||.|      |||.|| |.|..||||||.|  |||..|   ||.|||   ||||    
Sbjct 2100  TGTTAATTCTA----TGCAGTTTTATTGTGTG-TATAGATTCATGTGACCACGC---CACAGT---CAACACAC  2162

Query 1925  ---------TTTTCTCCAGAAACCACACTACAGATAGCCAT---AAGCAAACAGTAGCAACAGACTCTCATGAA  1986
                     ||.||.|.||.|.||   ||.|.|..|.||.|   ||||.||    |||.||...||.|| ||  
Sbjct 2163  AGAACAGGTTTATCACAAGGATCC---CTCCTGCCACCCTTTCAAAGCGAA----AGCCACTTTCTTTC-TG--  2226

Query 1987  GGACT---------------TA----CAGAAAATAGAGAGCCA--GATTCTGTTGATGAGAAAATTACTTT-CC  2038
               ||               ||    ||||||        |||  .||||||||.||          |||| .|
Sbjct 2227  ---CTCCTCCCCCACCTCCCTAACCCCAGAAA--------CCACTAATTCTGTTCAT----------CTTTATC  2279

Query 2039  CTTCTGACATTGATCCTCAA----GTTTTCTATGAACTACCAGAAGCAGTACAAAAGGAACTGCTGGCAGAGTG  2108
            .||.||.||||     ||||    |||       ||.||                               |.||
Sbjct 2280  ATTTTGTCATT-----TCAAAAATGTT-------AAATA-------------------------------AATG  2310

Query 2109  GAAGAGAGCAGGATCAGATTTCCAC-ATTGGACATAAA  2145
            |||||              .||||| |||..||.|.| 
Sbjct 2311  GAAGA--------------ATCCACTATTTAACCTTA-  2333