Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11612
- Subject:
- NR_147257.1
- Aligned Length:
- 2628
- Identities:
- 1674
- Gaps:
- 778
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCCCCCGGTTTCCCTGGAGACCAGGCGGAAGCGGCCGGAAGTAGCGCTGCGGTTGGCAGCGGCGGGATGGAG 74
Query 1 ---------------------------------------------------------------------ATGGA 5
|||||
Sbjct 75 AAGCTGGGGGTGGAGCCGGAGGAGGAAGGCGGCGGCGACGACGACGAGGAAGACGCCGAGGCCTGGGCCATGGA 148
Query 6 ACTGGCGGACGTGGGGGCGGCAGCCAGCTCGCAGGGAGTTCATGATCAAGTGTTGCCCACACCAAATGCTTCAT 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACTGGCGGACGTGGGGGCGGCAGCCAGCTCGCAGGGAGTTCATGATCAAGTGTTGCCCACACCAAATGCTTCAT 222
Query 80 CCAGAGTCATAGTACATGTGGATCTGGATTGCTTTTATGCACAAGTAGAAATGATCTCAAATCCAGAGCTAAAA 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCAGAGTCATAGTACATGTGGATCTGGATTGCTTTTATGCACAAGTAGAAATGATCTCAAATCCAGAGCTAAAA 296
Query 154 GACAAACCTTTAGGGGTTCAACAGAAATATTTGGTGGTTACCTGCAACTATGAAGCTAGGAAACTTGGAGTTAA 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GACAAACCTTTAGGGGTTCAACAGAAATATTTGGTGGTTACCTGCAACTATGAAGCTAGGAAACTTGGAGTTAA 370
Query 228 GAAACTTATGAATGTCAGAGATGCAAAAGAAAAGTGTCCACAGTTGGTATTAGTTAATGGAGAAGACCTGACCC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAAACTTATGAATGTCAGAGATGCAAAAGAAAAGTGTCCACAGTTGGTATTAGTTAATGGAGAAGACCTGACCC 444
Query 302 GCTACAGAGAAATGTCTTATAAGGTTACAGAATTACTGGAAGAATTTAGTCCAGTTGTTGAGAGACTTGGATTT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCTACAGAGAAATGTCTTATAAGGTTACAGAATTACTGGAAGAATTTAGTCCAGTTGTTGAGAGACTTGGATTT 518
Query 376 GATGAAAATTTTGTGGATCTAACAGAAATGGTTGAGAAGAGACTACAGCAGCTGCAAAGTGATGAACTTTCTGC 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGAAAATTTTGTGGATCTAACAGAAATGGTTGAGAAGAGACTACAGCAGCTGCAAAGTGATGAACTTTCTGC 592
Query 450 GGTGACTGTGTCGGGTCATGTATACAATAATCAGTCTATAAACCTGCTTGACGTCTTGCACATCAGACTACTTG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGTGACTGTGTCGGGTCATGTATACAATAATCAGTCTATAAACCTGCTTGACGTCTTGCACATCAGACTACTTG 666
Query 524 TTGGATCTCAGATTGCAGCAGAGATGCGGGAAGCCATGTATAATCAGTTGGGGCTCACTGGCTGTGCTGGAGTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTGGATCTCAGATTGCAGCAGAGATGCGGGAAGCCATGTATAATCAGTTGGGGCTCACTGGCTGTGCTGGAGTG 740
Query 598 GCTTCTAATAAACTGTTGGCAAAATTAGTTTCTGGTGTCTTTAAACCAAATCAACAAACAGTCTTATTACCTGA 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTTCTAATAAACTGTTGGCAAAATTAGTTTCTGGTGTCTTTAAACCAAATCAACAAACAGTCTTATTACCTGA 814
Query 672 AAGTTGTCAACATCTTATTCATAGTTTGAATCACATAAAGGAAATACCTGGTATTGGCTATAAAACTGCCAAAT 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGTTGTCAACATCTTATTCATAGTTTGAATCACATAAAGGAAATACCTGGTATTGGCTATAAAACTGCCAAAT 888
Query 746 GTCTTGAAGCACTGGGTATCAATAGTGTGCGTGATCTCCAAACCTTTTCACCCAAAATTTTAGAAAAAGAATTA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTCTTGAAGCACTGGGTATCAATAGTGTGCGTGATCTCCAAACCTTTTCACCCAAAATTTTAGAAAAAGAATTA 962
Query 820 GGAATTTCAGTTGCTCAGCGTATCCAAAAGCTCAGTTTTGGAGAGGATAACTCCCCTGTGATACTCTCAGGACC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGAATTTCAGTTGCTCAGCGTATCCAAAAGCTCAGTTTTGGAGAGGATAACTCCCCTGTGATACTCTCAGGACC 1036
Query 894 ACCTC--------------------------------------------------------------------- 898
|||||
Sbjct 1037 ACCTCAGTGAGTACAATAGCTTGCAGATAAAAAACTGTTAATATAAAAGTGAACTAAATGGCTCAAACTAAGGA 1110
Query 899 ----AGTCCTTTAGTGAAGAAGATTCATTTAAAAAATGTTCATCTGAAGTTGAAGCTAAAAATAAGATTGAAGA 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAAGAGTCCTTTAGTGAAGAAGATTCATTTAAAAAATGTTCATCTGAAGTTGAAGCTAAAAATAAGATTGAAGA 1184
Query 969 ACTACTTGCTAGTCTTTTAAACAGAGTATGCCAAGATGGAAGGAAGCCTCATACAGTGAGATTAATAATCCGTC 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACTACTTGCTAGTCTTTTAAACAGAGTATGCCAAGATGGAAGGAAGCCTCATACAGTGAGATTAATAATCCGTC 1258
Query 1043 GGTATTCCTCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTATTCCTTCACATGTAATTCAGAAATTA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGTATTCCTCTGAGAAGCACTATGGTCGTGAGAGTCGTCAGTGCCCTATTCCTTCACATGTAATTCAGAAATTA 1332
Query 1117 GGGACAGG------------AAATTATGATGTG-----------ATGACCCCAA-------TGGTTGATATACT 1160
|||||||| |.|| |..|||| ||| ||| |||..||.|.|||
Sbjct 1333 GGGACAGGTCTCCAGTCCCCAGAT--TTCTGTGCATCCTCTCTCATG----CAAAGAAGGCTGGAAGACAAACT 1400
Query 1161 TATGAAAC----------TTTTTCGAAATATGGTGAATG--------TGAAGATGCCATTTCACCTTACCCTTC 1216
|.||||.| ||||.|.|||.| .|.||.| |.|||..| ||||
Sbjct 1401 TGTGAAGCTAGAGGGTGTTTTTACTAAACA--CTAAAGGAGTTTTACTAAAGGAG---TTTC------------ 1457
Query 1217 TAAGTGTGTGCTTCTGCAACCTT--AAAGCACTAAATACTGCTA---AGAAAGGGCTTATTGAT-TAT-----T 1279
|||||.||| ||.| ||||..||||.||.|..|| ||||.|| ||||..| ||| |
Sbjct 1458 -AAGTGAGTG---------CCATGAAAAGACCTAATTATTCTTAAGGAGAATGG---TATTTCTGTATGTTCCT 1518
Query 1280 A---TTTAA---TGCCATCAT-----TATCAACTACTTCACGCTCTG-GCAAG-CACAGTTTTAAAA------- 1333
| ||.|| ||.||..|| |||.|| .|.||| |..||| .|||| ||||.||..||||
Sbjct 1519 ACACTTGAATTTTGACAATATTTTTCTATGAA--GCATCA-GAGCTGTTCAAGCCACAATTCCAAAAGGGTGTG 1589
Query 1334 --------------TGAAAGACACTCATATGGAA---------GATTTT-------CCCAAAGACAAAGA---- 1373
|||.|.|.|.|..|.|.||| |.|||| .|.|||.|..||.|
Sbjct 1590 TGCTTTTTTAGATTTGATACATAATATTTTTGAATAAAAGTAGGCTTTTTGCTGGGGCTAAATATTAATATTCT 1663
Query 1374 --AACAAACCGGGATTTCCTA-CCA-AGTGGAAGAATTGAAAGTACAAGA-----ACTAGGGAGTCTCCACTAG 1438
|||||.| .||||.| ||| || |.|||.|.|||||.| ||||.||
Sbjct 1664 TTAACAATC-----ATTCCAATCCATAG-------AGTGAGATTACAAAATCTTTACTAAGG------------ 1713
Query 1439 ATACCACAAATT-TTTCTAAAG---------AAAAAGACATTAAT---GAATTCCCACTCTGTTCACT------ 1493
||||| .||.||||| |||.|.|.|||||| |.|..|.|| ||.|||
Sbjct 1714 -------AAATTGCTTGTAAAGTGTAATGTCAAACAAATATTAATAACGTAAACACA-----TTAACTATATAT 1775
Query 1494 -------TCCTGAAGGT------GTTGACCAA-GAAGTCTTCAAGCA---GCT-TCCAGTA-GATATTCAAG-- 1546
|..||| || ||.||..|| ||| ||.|| ||| ||.|.|| ||||| ||
Sbjct 1776 TGGTAAATAATGA--GTGATATGGTAGATAAATGAA------AAACAAATGCTATCGATTATGATAT---AGTT 1838
Query 1547 ----AAGAAATCCTTT------CTGGAAAATCTAGGGAAAAATTTCAA--------GGGAAAGGAAGTGTGAG- 1601
|.||.||.|||| .||||.|..|| ||||.| ...|||...|.|.||||
Sbjct 1839 TTTAATGACATTCTTTTTTGGCTTGGATAGGCT---------TTTCTATTTTTTTTTTTAAACTTATTTTGAGA 1903
Query 1602 ---TTGTCCA-TTACATGCCTCTAGAGGAGTATTATCTTTCTTTTCTAAAAAACAAATGCAAGATATTCCCATA 1671
||||..| ||.||||| || ||||..||||.|..|||.||..||| |||
Sbjct 1904 TAATTGTAGATTTGCATGC----AG----------------TTTTGAAAAATAATAATACATAATA-----ATA 1952
Query 1672 AATCCTAGAGAT--CATTTATCCAGTAGCAAACAGGTATCCTCTGTATCTCCTTGTGAACC--GGGAACATCAG 1741
|..|| |.|| |.|||||||| ||.||||| || ||.||.||
Sbjct 1953 ATACC---ATATTCCCTTTATCCA--------------------GTTTCTCC-------CCATGGTAATAT--- 1993
Query 1742 GCTTTAATAGCAGTAGTTCT-TCTTACATGTCTAGCCAAAAGGATTATTCAT-------------ATTATTTAG 1801
|||..|||.|...|||.|| |.|.||| .|||| .||||.|| .|||.|| |||||||||
Sbjct 1994 -CTTGCATACCTACAGTACTGTATCACA--ACTAG-GAAAATGA-CATTGATACTACCCGCTGCCATTATTTAG 2062
Query 1802 ATAAT---AGATTAAAAGATGAACGAATAAGTCAAGGACCTAAAGAACCTCAAGGATTCCACTTTA--CA---- 1866
|||.| ||.|| .|.|||.|| ||| |||| ||
Sbjct 2063 ATACTACCAGTTT--TACATGCAC-------TCA----------------------------TTTATGCATGTG 2099
Query 1867 ----AATTCAAACCCTGCTG------TGTCTGCTTTTCATTCATTT--CCAAACTTGCAGAGTGAGCAAC---- 1924
|||||.| |||.| |||.|| |.|..||||||.| |||..| ||.||| ||||
Sbjct 2100 TGTTAATTCTA----TGCAGTTTTATTGTGTG-TATAGATTCATGTGACCACGC---CACAGT---CAACACAC 2162
Query 1925 ---------TTTTCTCCAGAAACCACACTACAGATAGCCAT---AAGCAAACAGTAGCAACAGACTCTCATGAA 1986
||.||.|.||.|.|| ||.|.|..|.||.| ||||.|| |||.||...||.|| ||
Sbjct 2163 AGAACAGGTTTATCACAAGGATCC---CTCCTGCCACCCTTTCAAAGCGAA----AGCCACTTTCTTTC-TG-- 2226
Query 1987 GGACT---------------TA----CAGAAAATAGAGAGCCA--GATTCTGTTGATGAGAAAATTACTTT-CC 2038
|| || |||||| ||| .||||||||.|| |||| .|
Sbjct 2227 ---CTCCTCCCCCACCTCCCTAACCCCAGAAA--------CCACTAATTCTGTTCAT----------CTTTATC 2279
Query 2039 CTTCTGACATTGATCCTCAA----GTTTTCTATGAACTACCAGAAGCAGTACAAAAGGAACTGCTGGCAGAGTG 2108
.||.||.|||| |||| ||| ||.|| |.||
Sbjct 2280 ATTTTGTCATT-----TCAAAAATGTT-------AAATA-------------------------------AATG 2310
Query 2109 GAAGAGAGCAGGATCAGATTTCCAC-ATTGGACATAAA 2145
||||| .||||| |||..||.|.|
Sbjct 2311 GAAGA--------------ATCCACTATTTAACCTTA- 2333