Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- NR_045530.2
- Aligned Length:
- 6766
- Identities:
- 168
- Gaps:
- 6575
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTTTAGCTTAGCAGGCGACGTTGCGGGCCCTGGGCGCCAGGAGAGCTTCCCGGAGTCGACCTTCCTGCTGGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTCTGTGACCGCTTCCCGGCTCTGCCCTCTTGGCCGAAGTGCCCGCTGCCGGGCGCGGGCCTCAGGAATTGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCATTTTTTATGAAGGAAGTTGGCAGTCACTTTGATGATTTTGTGACCAATCTCATTGAAAAGTCAGCATCAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAGATAATGGTGGGTGCGCTCTCACAACCTTTTCTGTTCTTGAAGGAGAGAAAAACAACCATAGAGCGAAGGAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGAGAGCACCTCCAGAACAAGGAAAGATTTTTATTGCAAGGCGCTCTCTCTTAGATGAACTGCTTGAAGTGGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCACATCAGAACAATATATCACATGTTTATTGCCCTCCTCATTCTCTTTATCCTCAGCACACTTGTAGTAGATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACATTGATGAAGGAAGGCTGGTGCTTGAGTTCAGCCTCCTGTCTTATGCTTTTGGCAAATTTCCTACCGTTGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGACCTGGTGGATCATGTTCCTGTCTACATTTTCAGTTCCCTATTTTCTGTTTCAACATTGGGCCACTGGCTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAGCAAGAGTTCTCATCCGCTGATCCGTTCTCTCTTCCATGGCTTTCTTTTCATGATCTTCCAGATTGGAGTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TAGGTTTTGGACCAACATATGTTGTGTTAGCATATACACTGCCACCAGCTTCCCGGTTCATCATTATATTCGAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGGATTTTCTGACTTTACTGGCTATCTATAATGCATTTGACTAATGGAAAGGACACTTGCAGGAGACTTTCTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGAAGAGACATCTTTTTCCTCCTGCTTTTGTAGATTCGTTTTGTAATGAAGGCCCACTCATTTGTCAGAGAGAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGTGCCTCGGGTACTAAATTCAGCTAAGGAGAAATCAAGCACTGTTCCAATACCTACAGTCAACCAGTATTTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTTCTTATTTGCTCCTACCCTTATCTACCGTGACAGCTATCCCAGGAATCCCACTGTAAGATGGGGTTATGTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTATGAAGTTTGCACAGGTCTTTGGTTGCTTTTTCTATGTGTACTACATCTTTGAAAGGCTTTGTGCCCCCTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTTTCGGAATATCAAACAGGAGCCCTTCAGCGCTCGTGTTCTGGTCCTATGTGTATTTAACTCCATCTTGCCAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTGTGCTGATTCTCTTCCTTACTTTTTTTGCCTTTTTGCACTGCTGGCTCAATGCCTTTGCTGAGATGTTACGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTGGTGACAGGATGTTCTATAAGGATTGGTGGAACTCCACGTCATACTCCAACTATTATAGAACCTGGAATGT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GGTGGTCCATGACTGGCTATATTACTATGCTTACAAGGACTTTCTCTGGTTTTTCTCCAAGAGATTCAAATCTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGCCATGTTAGCTGTCTTTGCTGTATCTGCTGTAGTACACGAATATGCCTTGGCTGTTTGCTTGAGCTTTTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TATCCCGTGCTCTTCGTGCTCTTCATGTTCTTTGGAATGGCTTTCAACTTCATTGTCAATGATAGTCGGAAAAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCCGATTTGGAATGTTCTGATGTGGACTTCTCTTTTCTTGGGCAATGGAGTCTTACTCTGCTTTTATTCTCAAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATGGTATGCACGTCAGCACTGTCCTCTGAAAAATCCCACATTTTTGGATTATGTCCGGCCACGTTCCTGGACT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCGTTACGTGTTTTAGAAGCTTGGACTTTGTTTCCTCCTTGTCACTGAAGATTGGGTAGCTCCCTGATTTGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AGCCAGCTGTTTCCAGTTGTTACTGAAGTTATCTGTGTTATTTGGACCACTCCAGGCTTTACAGATGACTCACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCATTCCTAGGTCACTTGAAGCCAAACTGTTGGAAGTTCACTGGAGTCTTGTACACTTAAGCAGAGCAGAACTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTTTGTGGGGCTGGGTGGGGGGAGAAGACCGACTAACAGCTGAAGTAATGACAGATTGTTGCTGGGTCATATC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTTTATCCCTTGGTAATTATATCTGTTTTGTTTCTTGACTCTGTCCAATCAGAGAATAAACATCATAGTTTC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTGGCCACTGAATTAGCCAAAACACTTAGGAAGAAATCACTTAAATACCTCTGGCTTAGAAATTTTTTCATGCA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CACTGTTGGAATGTATGCTAATTGAACATGCAATTGGGGAAGAAAAAATGTAGAATGATTTTTGCTATTTCTAG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TAGAAAGAAAATGTCTGTTTTCCAAAGATAATGTTATACATCCTATTTTGTAATTTTTTTGAAAAAAGTTCAAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTTCAGTTTTCCTTAGTTTTTACCTTGTTTTCTCTATAGGTCATGATTTCTGTGAAGCAAAAAGATGCCTTTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCATGAATTCTTGAGTTTACATCAATAATATTGTATATTAAGGGGATCAGAAGTAGGAAGGAAAAAATAAGAGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TAGCAGAGGAAAAAGAAAAACATTTCCTCTTATAACTTCTGAAGTAATTTGTAAAAAAGATTTGTAGAGTCAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CATGTGTTTAAATTATTTTATCACAAACTTAACATGGAAGATATTCCTTTTTAACTTTGTGGTAACTTCTTTGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGTTATTTAGAAATATCCTTTGGAACAATTATTTTATTGTCTAATAAATATTGACTTCTCTTGAATTATTTTGC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGACTAGTGAGTCTGTACCATAAGTATTAATCACCTCCACTCATATTAAAGTGATCATTAAGAATCCAGAAGCT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGCTTCTGCATTTGCTCAGTTATACTTTTAATGGTAGTATGTTTTTAGGTGGAATAAATTAATATGTGATTGGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTCAAGGAAATGTACTCTATTATGTAATACTTCCATTTTATAAGATGCCCATTTCTAATACAATGTGTGTAGGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATTATTTGTATGTATGAGGTATGATTGTAAAGATTGAGCATTGGAAGGGGTATCAGAGACCATGTAGTTCAACT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTCCACTCAAAGTAAGATTTATGAATTATTTAAATGATAGTTGTTACTTGGAACAGCCACTTGAGAGGCTCTCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGGTATTGTTTGGAATTGTTTTAAAGTCAGTTTGAGTCTCACAAGAAGGTAAGTAGAGTTTCTTAATAGTCACA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACTTAATTTGAACCACAAGTATCCAGCTTAATCACGTATCTTACTCACGATACCACTGGTCCAGATGAGTTTAG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTAATTTTCAAACATTAAATCCAACTTCAACGGAAACAAATACACTCAAGGGAAGTTATTTTTAAAAAGGTACT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CTGCATGTTCCCGCAGTAATGTTCTGCACAACAGTATTGTAATTGTAATGGAATCATAACCTGCTAACTAGTTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GCTTTAATATGGCTTGTAATTCTTGACATTTTTCTTAAAATTAAAACGAATTTTTATTTTGAATTTATAACTGC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATTTTAAATATATTGGGGACAGATTGCGCTGAGACCTGGTTATGAGCAAGCCAATCTTTTGAATCTAGAGAATG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GAATTCTTAGGTTTATATTTCTGTTAAGAAATACTATAAATATGACTCTTATGAGAAGACTTTGTTGCTCTGTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTGTTTCTGAATACTGTATTTGTTGGATTGATCAAGGCTATTTTTCAAAAAGCTCTCTGCTTCCTGTTTGTTTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTTGTTTGTTTTTGAGACAGAGTCTTGCTCTGTCGCCGGGGCTGGAGTGCAATGGCGTGAACTCAGCTCACTGC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AACCTCTGCCTCCCTGGTTCAAGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGGCCACGCCT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCCTGTTGGTCAGGCTGGTCTCAAACTCCTGACCTTG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGAAGACAGGCGTTAGCCACCGTGCCCGGCCTCTGTTTCCTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTATTAGTGATTTTCCTGCCCAAGATTGCAACAACAAATATGTAGAACTACAGACTGTTTAGAATGCTGAGACT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GTTCTAAGAAACTTTCAAAAACAGTAGCACTTCAAGGAATGGTCACTTTCTATGAAAGAAACTGGTTTGATAGC 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CATAATCTTATTGCTAGCTGCTTTTAGCAAAAGTCTTTTCTTGAAACCACCACCTATACTCTTTAAACAAATAA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AAACTAAAATCTCTTGCTAATGTTTCAGGAAGATTTATTTTTTCTATTTTGCTATTGTGGCGAAAATTATTTTC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AGTTATAGGATACTTTTTTCCTTCTGAAAAGTAATAAGCTTAAAGTTTTTGTTTCTGTAAGATGTAATGATAGT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AACTATTATTTTGGGCATATTAACCAACAGAACAATTATGTAGTATGTATATCACTTTCTCATTAGATCTCTAA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CTTGACCTTCTAGTACCTTTATGTGTGAGGATAAATTTGTTAGATCCTTTTATTCTCAATCTTGGATAATGATG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 CAAAATGGAATTTTGTTTTGTTTGTTGGTAGATTCACATACTAAAACTTTGCAGGTAAAGTTGCTTGCCTCATG 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TTAGAATTTAATTAGAAAACTGAGGCTGCCTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAGAGTCTTGTTCTG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 TCGCCCAGGCCAGTTTTTTTTTTCTTGTACAGATGGGGTTTTACCATGTTGCTCAGGCTGGTCTCAAACTCCTG 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 GAGTCAAGGGATCTATTTGCCTCAGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCACGGCTCCTGGCTCCT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TGCTCCAGAATCAGTTTTTTAATGGAAGATAGCTCATACTTTGTTTTTGTTTTTAAAGAGACAGGGTCTCACTC 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TGTTGCCCAGGCTGGTAGTAGCGTGATCATAGCTCACTGCAGTCTCAAACTCCTGGACTCAAATAGTGCTCTGG 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 AGTACCTAGAACTACAAGTGCCTACCACCACACCCAGCTAATTTATTTGTTTTTTTTTTTTTAGAGATGGGGGG 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 GGTCTCCCTATGTTGCCCAGGCTGGTCTCAAACTCTTCACCTCAAGCAAAACTCCCACTGCAGAAAGCTTTGGG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 ATTACAGGCATGAGCCACCATGCCAAGCCCATACTTATTGTTAATAAAGTTTCAGTGACTTGCTTACTAATCTT 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 ATGCAAAATTTCATGTAATTTATGTAATACTACATAACAATGCTACATATGGTATGTATACATACACTGTATAC 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 ACACAAAGGTCTGTTCTGGGTATTTTATGTATCTTATCTCTAGGCTTTATGGCTCTGAAATGGAGGGAACTGGA 5254
Query 1 -----------------------------------------------------ATGGAGTCTCACTCTGTCACC 21
|.||||||||| |||| |
Sbjct 5255 CATAAATGTTTCAAGGAATAAAGTGAATGTTTTGTTTGTTTGTTTGTTTTGAGACGGAGTCTCA----GTCA-C 5323
Query 22 CAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCT 95
|||||||||||||||||..|||||||..|||||||||||||||||||||||||||||||||.|||||||..|||
Sbjct 5324 CAGGCTGGAGTGCAGTGCTGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCT 5397
Query 96 CAGCCTCCCAAGTAGCTGGGATTACAGACGTG--TGCCACCATACCTGGGTAATTTTTGCATTTTTAGTGGAGA 167
|||||||||.|||||||||.||||||| ||| |||||||||..|..|.|||||||||..||||||||.||||
Sbjct 5398 CAGCCTCCCGAGTAGCTGGCATTACAG--GTGCCTGCCACCATGTCCAGCTAATTTTTGTGTTTTTAGTAGAGA 5469
Query 168 GGGAGTTTCACCATGTTGGCCAGGTTGGTCT------------------------------------------- 198
.||.|||||||||||.|||.||||.||||||
Sbjct 5470 TGGGGTTTCACCATGATGGTCAGGCTGGTCTCGAACTCCTGACCTCATGATCCGCCAGCCTCAGCCTCCCATAG 5543
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5544 TGCTGGGATTATAGGCATGAGCCATGCTCCCGGCCAAAGTGAATGTTTTGGGTGAAGTTTATATAAGGATTTGA 5617
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5618 CTTTTGTATCATTATTAAAGTTTCTGTCAGGTAATACAGTGTTGGCCCTCTGTTGAAATAAAATGTTACATATC 5691
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5692 GCTGGGTGTAGTGGCTCATGCCTTTAATCCCAGTACTTTGGGAGGCCAAGGCAGGAGGATTGCTTGAGCTCAGA 5765
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5766 AGTTTGAGACCAGCCTGGGCAACATAGCAAAACCTTGTCACTATAAAAAATACAAAAATTAGCCAGGCGTGGTG 5839
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5840 GTGCACGCCTGTAGTCTCAGCTACTCAGTCGGCTGAGGTGGGAAGATGGCTTCAAGCCGGGAGATGGAGGCTTC 5913
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5914 AGTGACCTGTGACCTGTGATCACACCACTTAATTCCTCAAAACATTTATGTCCCAGTTCCCTCCATTTCAGAGC 5987
Query 199 -------------------------------------------------------------------------- 198
Sbjct 5988 CATGGGCAACAGAGCGAGACCCTGTCTCAAAAAAAAAATTACATATAAGCCCGGTTTAAAGAGAGGATAATATG 6061
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6062 CAACCACCCTAGTTGAAACAGAGTGTATCACTTCTTTCTCACCCTAAATTTAATGCCTAGTTTGAAAATCAGTA 6135
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6136 GACAATAATAAAGTTGATAAGCTTTAGGTTGGTAGGAAAGCTATGTAATCTATATAGTGTACTAAATCCTTATA 6209
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6210 TGTTTTTGGTAAAAAAAGACTTTAATAGCTAATTTGGACTTCAGAAAATGGGTTAATTTCACGAGTGCATATCA 6283
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6284 CTTTTGACTATATTAGTCAAGCATATTATTAAAGTTTAAAAAACTCTAAAACTTCTGTACTGTTTTTTTCTTAA 6357
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6358 GTGCTCTCTTCCTTATTTCTACATTACTACATTCACATTTCTGCTGTCAATAAGCCCTAATGGAGTGATAAACT 6431
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6432 TTAAGCTAGTAGATACTGCACCATGTCTTGTGGTGGTGTTTTCTTAATGAAATGGAAGCTGTACTTCCTGTTTG 6505
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6506 TTTTTAAATACTTTTGAAACAGACAGTTCATGTACCCCATCATTTAGAGATGCAGTTTGAATTTCCATGGAAAA 6579
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6580 AGGTGCCAATTTTGGATTGGGAAAGGAGCTGAAGCCCCAGTCAAGACTTTGCCATTTGGGGTAATGCAGCAGAT 6653
Query 199 -------------------------------------------------------------------------- 198
Sbjct 6654 TCCTGTGTCTGTATCTTTCCAGTGTGTGTGTTAATCCATAGTGTTCTGAGCACCAGAAGGGTCATGTAAATCTG 6727
Query 199 -------------------------------- 198
Sbjct 6728 AAGTTGTTATTAAAGGTTTTTCTATAGTGAAA 6759
