Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11616
- Subject:
- XR_001751506.1
- Aligned Length:
- 3377
- Identities:
- 171
- Gaps:
- 3184
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGCCAGCCCGGGAGGACTCCAGTCAGCTCGGACAAGACTGCCCTTCTGTCCCAACACCTCCAGAGGACACAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACAGGCAGCCTGACCACCATATCTGCTATTGCACTCTGCCTGCTGCCACAGCCCCCCGGGCACTTCTGGCCCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACAGCGTCTTCCATATCTTTAGGGGGTGGCAGCAGACTCACAGCAAGTCCCATCTTCCTGGAGCCCAAGGAAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGATGAAATGAAGACATTCTCAGATGAAGAAAAACTAGGAGAATTAATTGACAACGGACCTGCTCTAAAAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGTGGCTAAAAGAAGTTCTTCAGACTGAAGGGAAATGATACTAGAAGGGAACTTGGAGCTTCAGGAATGAAGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAACAACAACAAAAAAAAGGATAAACTAAGCTCTACAAACTCAGAAGACATTGCTATGATATGCCAGCCCTTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATCATGGTCTAGTACAACAAATGCTAAATAAATGGAATGTTTTATTTATATCTTTAACAAAAATAATTAGTATT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTATAGTTTAATTTTGCAGTAATTCAGTAAATGGATTTTTCTTGCTTATTTAAATTAGTGATGTTTTCTCATAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GTGGTGGTGTTTCAAGAAAAGTTATAACTCTGAATGTGCTACCAGCATAAGATCCAGTCTTTGATATCTGTCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TACATAAATATAGCTTAACATTGATTTCACTATTTTGAGAGCTTTCTGAATGGTTCTGGTGTTCTTGTGCGTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GACAGCCAGTAAAGATCAGGTTATTCAGAGTGCTGAATAAGATCACTTAAGAAATAACATAAATAAAAGGACTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TATGGTTAGATTAATAGATCTAAAAGTTAAATAAACCTTTTTTTTGGTAACCCTTAAATTGCCAAACTAAAATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATTTTATACCTTTAAATAAAAATACCAGAAGTTTTCCAGAAACAATTTTTTCCTTAGCTAGACTGTAGGAGTCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CATAAAATAACTGACTGGAGAAATCCTTCTGCAAAGCGAAAGAAAGTAGTGTGAAGAATTCATCTGTTACTCCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTTGACCAGACCCACAAAGAAAAAGCAATAGTTTAATATGTACCTCGTTAGCCACATACAAAGTTCAGATTATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCTGATCATTCTAGTGCTGATCATTTGAATTTGATGGTTGTCTATACCCGTGCTTCTCAAAAAATCTGTGGCGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGGGGCCAGTTTTATTGTGTGTATGTGTGTGTTCCATTATGGACTGATATAAAGTACAATAAAAACAGAAGTTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTCAAAGAATGATGATGTGCTTGGATGTCCCGGCAATATCAAATTGTTACCAAAGTTTCCAAAAGCTCACTTTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AATTTTTGAACTTATCTCAAACAGTATGCAAACCCTTCTTTCAGTAGCACTGATCTAGATTATGCTTTTTACTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CATGATATTATTCTTCTTCAGTACAAGCACCAGGTTATCAAAAATAAACAGATAAATTATTCTAATTAATTGTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACTTTTAACAACTCCAATTAAATATAATCATAGAATCCTGGGATTAAAAGTCACTTTAGAGGTGCAGCTAGTCC 1554
Query 1 -----------------------------------------ATGGAGTCTCACTCTGTCACCCAGGCTGGAGTG 33
|..|||||||.|||||||.|||||||||||||.
Sbjct 1555 AATCTTTTTTTTTTTTTTTTTTTTTTATCTTTTTTTCTGAGACTGAGTCTCGCTCTGTCGCCCAGGCTGGAGTA 1628
Query 34 CAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCCACCTCAGCCTCCCAAG 107
|||||||.||||||..|.||| |||||||||||.|||||||||||||||.|||||||..||||||||||||.||
Sbjct 1629 CAGTGGCATGATCTCAGTTCA-TGCAACCTCTGTCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAG 1701
Query 108 TAGCTGGGATTACAGACGTGTGC-CACCA-TACCT--GGGTAATTTTTGC---------ATTTTTAGTGGAGAG 168
||.||||||||||| ||||| ||||| .||.| ||.|||||||||| |||||||||.||||.
Sbjct 1702 TAACTGGGATTACA----TGTGCGCACCACCACGTGCGGCTAATTTTTGCATTTTTTGTATTTTTAGTAGAGAT 1771
Query 169 GGAGTTTCACCATGTTGGCCAGGTTGGTCT-------------------------------------------- 198
|..|||||||||||||||||||||||||||
Sbjct 1772 GAGGTTTCACCATGTTGGCCAGGTTGGTCTCGAACTCCTAACCTCAGATGATACACTTACCTTGGCCTCCCAAA 1845
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1846 GTGCTGGGATTACAGGTGGGAGCCACCACACCCAGTCTCCAATCTTATAATAAATTACATGTAAAGATATTATT 1919
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1920 TAGGCTAGTGACAAATGAAGGACAAAATCCATTGTTACACCACCAGGGTCCACAGACTCCAGGCTAACAAATCT 1993
Query 199 -------------------------------------------------------------------------- 198
Sbjct 1994 GTTTAGCATTCTTTGGGTGCCATTCTTCATTATAAGTTTCTGTAACTAATATCCATAGGGTAATTTCTCCAACC 2067
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2068 TTTCACTAAGGATGTAAAAATATTTGTCGAATGTCCTGAGGAAATCAAGATACCTCATGGCTTCAGGATTTACC 2141
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2142 TAATTTTCTATACTTGTAACTACAGTTGACCCTTGAACAACACAGGTCTGAACTGCATAGGTTCACATATACAG 2215
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2216 ATTTTCTTCCATCTCTGCCACCCGTGAGACAGCAAGACGAACCCGTTTTCTTCCTCCGCAGCCTACTCAATGTG 2289
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2290 AAGACGAGGATGAAGATCTTTACAATCATCCACTTAATGACTATTAAATATACATTCTCTTCCTTATAATTTTC 2363
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2364 TTAATAACATTTTCTTTTCTCTAGCTAAGATTGTTGTAAAAAAAAAGATATAATACATATGGCATACAAACTAT 2437
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2438 GTGTTCATCAACTTTATGTTATTGGTAAGGCGTCTGGTCAACAGTAGGCTATTAATAATTTTGGGGGCCAAAAG 2511
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2512 TTATATGCAGACTTTCAACTGGGTGAGGGGTGGGCACACCTAAGCCCTGTGTTGTTCAAGGGTCAACTGTATTG 2585
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2586 GAAGTTTAAAATCAGTCCTCCTTAAGACTTTAGTAAGAAATTTATTTCTTACTTTATTACTTTATTTTAGTAAG 2659
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2660 AAATTTATTTCTTACTTTATTACTTTATTTTAGTAAGAAATTTATTTCTTACTTTATTACTTTTAGTAAGAAAT 2733
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2734 TTATTTCTTACTTTATTACTTTATTTTAGTAAGAAATTTATTTCTTTATTTTAGTAAGAAATTTATTTCTTACT 2807
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2808 TTATTTTATTAAGAAATCTTATCAGTTTTAATGCCAAGAGATTTATTTTAGTAAGAAATCTTATCAGTTTTAAT 2881
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2882 GTCAATATTTCATCATATTGTGGTGGTTGTAAATAATTCCAAATATTTATTGTTTATTTTTTTAAATTTATTTT 2955
Query 199 -------------------------------------------------------------------------- 198
Sbjct 2956 AGAATAAAAGCAGTAATATTAATGTCTAACAAACGGTGGTCATTTTTTTAATAAAAAATATGTTTTTCCTACAT 3029
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3030 GTCAAGTAAGACAGTACAAAGTAGTGCTGGGATTACAGGCATGAGCCACCATGCCCAGCTGAGGCAGACATTTT 3103
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3104 TGGCTGTAGCAATATACTAGGTGAAAAAAGTCCAAAGACCAATAAAAAACTAAAATATCACTTCTTTGTGTTGA 3177
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3178 TGACTTTCATAAAGGAGTGAAAGGGATACCAGAATCACAGAGGGAAGTTTTTCCCCAAACAACCACACTGCTGC 3251
Query 199 -------------------------------------------------------------------------- 198
Sbjct 3252 CAAATGTTAGCTCCTGCACCTCCTCCTCCAGTACAGTTGAATGGCCCAATTATGTTTTTCTGTTTTGGTTGTTT 3325
Query 199 ----------------------------------------------- 198
Sbjct 3326 TTTTGAGACAGGATCTTGCTCTGTCACTTGGGCTGGCGGACAGTGGT 3372
