Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11637
- Subject:
- NM_001191049.2
- Aligned Length:
- 3629
- Identities:
- 1486
- Gaps:
- 2131
Alignment
Query 1 ATGAAGTTAAAGGAAGTAGA-TCGTAC-AGCCATGC----AGGCATGGAGCC--CTGCCCAGAA--TCACCCCA 64
|||..| |.||| ||..|| |||..||| |.||| |||.|| ||||| ||| |
Sbjct 1 ATGCTG---------GGAGAGTCCGACGAGCGCTGCACTAACGCA-GGATCCGGCTGCC--GAAGGT------- 55
Query 65 TTTACCTAGCAACAGGAACATCTGCTCAGCAATTGGATGCAACATTTAGTACGAATGCTTCCCTTGAGATATTT 138
|||.|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 ----CCTCGC--CAGGAACATCTGCTCAGCAATTGGATGCAACATTTAGTACGAATGCTTCCCTTGAGATATTT 123
Query 139 GAATTAGACCTCTCTGATCCATCCTTGGATATGAAATCTTGTGCCACATTCTCCTCTTCTCACAGGTACCACAA 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GAATTAGACCTCTCTGATCCATCCTTGGATATGAAATCTTGTGCCACATTCTCCTCTTCTCACAGGTACCACAA 197
Query 213 GTTGATTTGGGGGCCTTATAAAATGGATTCCAAAGGAGATGTCTCTGGAGTTCTGATTGCAGGTGGTGAAAATG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 GTTGATTTGGGGGCCTTATAAAATGGATTCCAAAGGAGATGTCTCTGGAGTTCTGATTGCAGGTGGTGAAAATG 271
Query 287 GAAATATTATTCTCTATGATCCTTCTAAAATTATAGCTGGAGACAAGGAAGTTGTGATTGCCCAGAATGACAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GAAATATTATTCTCTATGATCCTTCTAAAATTATAGCTGGAGACAAGGAAGTTGTGATTGCCCAGAATGACAAG 345
Query 361 CATACTGGCCCAGTGAGAGCCTTGGATGTGAACATTTTCCAGACTAATCTGGTAGCTTCTGGTGCTAATGAATC 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CATACTGGCCCAGTGAGAGCCTTGGATGTGAACATTTTCCAGACTAATCTGGTAGCTTCTGGTGCTAATGAATC 419
Query 435 TGAAATCTACATATGGGATCTAAATAATTTTGCAACCCCAATGACACCAGGAGCCAAAACACAGCCGCCAGAAG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGAAATCTACATATGGGATCTAAATAATTTTGCAACCCCAATGACACCAGGAGCCAAAACACAGCCGCCAGAAG 493
Query 509 ATATCAGCTGCATTGCATGGAACAGACAAGTTCAGCATATTTTAGCATCAGCCAGTCCCAGTGGCCGGGCCACT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 ATATCAGCTGCATTGCATGGAACAGACAAGTTCAGCATATTTTAGCATCAGCCAGTCCCAGTGGCCGGGCCACT 567
Query 583 GTATGGGATCTTAGAAAAAATGAGCCAATCATCAAAGTCAGTGACCATAGTAACAGAATGCATTGTTCTGGGTT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GTATGGGATCTTAGAAAAAATGAGCCAATCATCAAAGTCAGTGACCATAGTAACAGAATGCATTGTTCTGGGTT 641
Query 657 GGCATGGCATCCTGATGTTGCTACTCAGATGGTCCTTGCCTCCGAGGATGACCGGTTACCAGTGATCCAGATGT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GGCATGGCATCCTGATGTTGCTACTCAGATGGTCCTTGCCTCCGAGGATGACCGGTTACCAGTGATCCAGATGT 715
Query 731 GGGATCTTCGATTTGCTTCCTCTCCACTTCGTGTCCTGGAAAACCATGCCAGGGGGATTTTGGCAATTGCTTGG 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GGGATCTTCGATTTGCTTCCTCTCCACTTCGTGTCCTGGAAAACCATGCCAGGGGGATTTTGGCAATTGCTTGG 789
Query 805 AGCATGGCAGATCCTGAATTGTTACTGAGCTGTGGAAAAGATGCTAAGATTCTCTGCTCCAATCCAAACACAGG 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AGCATGGCAGATCCTGAATTGTTACTGAGCTGTGGAAAAGATGCTAAGATTCTCTGCTCCAATCCAAACACAGG 863
Query 879 AGAGGTGTTATATGAACTTCCCACCAACACACAGTGGTGCTTCGATATTCAGTGGTGTCCCCGAAATCCTGCTG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 AGAGGTGTTATATGAACTTCCCACCAACACACAGTGGTGCTTCGATATTCAGTGGTGTCCCCGAAATCCTGCTG 937
Query 953 TCTTATCAGCTGCTTCGTTTGATGGGCGTATCAGTGTTTATTCTATCATGGGAGGAAGCACAGATGGTTTAAGA 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TCTTATCAGCTGCTTCGTTTGATGGGCGTATCAGTGTTTATTCTATCATGGGAGGAAGCACAGATGGTTTAAGA 1011
Query 1027 CAGAAACAAGTTGACAAGCTTTCATCATCTTTTGGGAATCTTGATCCCTTTGGCACAGGACAGCCCCTTCCTCC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CAGAAACAAGTTGACAAGCTTTCATCATCTTTTGGGAATCTTGATCCCTTTGGCACAGGACAGCCCCTTCCTCC 1085
Query 1101 GTTACAAATTCCACAGCAGACTGCTCAGCATAGTATAGTGCTGCCTCTGAAGAAGCCGCCCAAGTGGATTCGAA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GTTACAAATTCCACAGCAGACTGCTCAGCATAGTATAGTGCTGCCTCTGAAGAAGCCGCCCAAGTGGATTCGAA 1159
Query 1175 GGCCTGTTGGTGCTTCTTTTTCATTTGGAGGCAAACTGGTTACGTTTGAGAATGTCAGAATGCCTTCTCATCAG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GGCCTGTTGGTGCTTCTTTTTCATTTGGAGGCAAACTGGTTACGTTTGAGAATGTCAGAATGCCTTCTCATCAG 1233
Query 1249 GGAGCTGAGCAGCAGCAGCAGCAGCACCATGTGTTCATTAGTCAGGTTGTAACAGAAAAGGAGTTCCTCAGCCG 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 GGAGCTGAGCAGCAGCAGCAGCAGCACCATGTGTTCATTAGTCAGGTTGTAACAGAAAAGGAGTTCCTCAGCCG 1307
Query 1323 ATCAGACCAACTTCAGCAGGCTGTGCAGTCACAAGGATTTATCAATTATTGCCAAAAAAAAATTGATGCTTCTC 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 ATCAGACCAACTTCAGCAGGCTGTGCAGTCACAAGGATTTATCAATTATTGCCAAAAAAAAATTGATGCTTCTC 1381
Query 1397 AGACTGAATTTGAGAAAAATGTGTGGTCCTTTTTGAAGGTAAACTTTGAGGATGATTCTCGTGGAAAATACCTT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 AGACTGAATTTGAGAAAAATGTGTGGTCCTTTTTGAAGGTAAACTTTGAGGATGATTCTCGTGGAAAATACCTT 1455
Query 1471 GAACTTCTAGGATACAGAAAAGAAGATCTAGGAAAGAAGGTAAACT--TTTGG-------GAAAGT-------- 1527
||||||||||||||||||||||||||||||||||||||| |.| ||||| .|||||
Sbjct 1456 GAACTTCTAGGATACAGAAAAGAAGATCTAGGAAAGAAG----ATTGCTTTGGCCTTGAACAAAGTGGATGGAG 1525
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1526 CCAATGTGGCTCTTAAAGACTCTGACCAAGTAGCACAGAGTGATGGGGAGGAGAGCCCTGCTGCTGAAGAGCAG 1599
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1600 CTCTTGGGAGAGCACATTAAAGAGGAAAAAGAAGAATCTGAATTTCTACCCTCATCTGGAGGAACATTTAATAT 1673
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1674 CTCTGTCAGTGGGGACATTGATGGTTTAATTACTCAGGCTTTGCTGACGGGCAATTTTGAGAGTGCTGTTGACC 1747
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1748 TTTGTTTACATGATAACCGCATGGCCGATGCCATTATATTGGCCATAGCAGGTGGACAAGAACTCTTGGCTCGA 1821
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1822 ACCCAGAAAAAATACTTCGCAAAATCCCAAAGCAAAATTACCAGGCTCATCACTGCAGTGGTGATGAAGAACTG 1895
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1896 GAAAGAGATTGTTGAGTCTTGTGATCTTAAAAATTGGAGAGAGGCTTTAGCTGCAGTATTGACTTATGCAAAGC 1969
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 1970 CGGATGAATTTTCAGCCCTTTGTGATCTTTTGGGAACCAGGCTTGAAAATGAAGGAGATAGCCTCCTGCAGACT 2043
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2044 CAAGCATGTCTCTGCTATATTTGTGCAGGGAATGTAGAGAAATTAGTTGCATGTTGGACTAAAGCTCAAGATGG 2117
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2118 AAGCCACCCTTTGTCACTTCAGGATCTGATTGAGAAAGTTGTCATCCTGCGAAAAGCTGTGCAACTCACTCAAG 2191
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2192 CCATGGACACTAGTACTGTAGGAGTTCTCTTGGCTGCGAAGATGAGTCAGTATGCCAATTTGTTGGCAGCTCAG 2265
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2266 GGCAGTATTGCTGCAGCCTTGGCTTTTCTTCCTGACAACACCAACCAGCCAAATATCATGCAGCTTCGTGACAG 2339
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2340 ACTTTGTAGAGCACAAGGAGAGCCTGTAGCAGGACATGAATCACCTAAAATTCCGTACGAGAAACAGCAGCTCC 2413
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2414 CCAAGGGCAGGCCTGGACCAGTTGCTGGCCACCACCAGATGCCAAGAGTTCAAACTCAACAATATTATCCCCAT 2487
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2488 GGAGAAAATCCTCCACCTCCGGGTTTCATAATGCATGGAAATGTTAATCCAAATGCTGCTGGTCAGCTTCCCAC 2561
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2562 ATCTCCAGGTCATATGCACACCCAGGTACCACCTTATCCACAGCCACAGCCTTATCAACCAGCCCAGCCGTATC 2635
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2636 CCTTCGGAACAGGGGGGTCAGCAATGTATCGACCTCAGCAGCCTGTTGCTCCTCCTACTTCAAACGCTTACCCT 2709
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2710 AACACCCCTTACATATCTTCTGCTTCTTCCTATACTGGGCAGTCTCAGCTGTACGCAGCACAGCACCAGGCCTC 2783
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2784 TTCACCTACCTCCAGCCCTGCTACTTCTTTCCCTCCTCCCCCTTCCTCTGGAGCATCCTTCCAGCATGGCGGAC 2857
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2858 CAGGAGCTCCACCATCATCTTCAGCTTATGCACTGCCTCCTGGAACAACAGGTCCTCAGAATGGTTGGAATGAC 2931
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 2932 CCTCCAGCTTTGAACAGAGTACCCAAAAAGAAGAAGATGCCTGAAAACTTCATGCCTCCTGTTCCCATCACATC 3005
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3006 ACCAATCATGAACCCGTTGGGTGACCCCCAGTCACAAATGCTGCAGCAACAGCCTTCAGCTCCAGTACCACTGT 3079
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3080 CAAGCCAGTCTTCATTCCCACAGCCACATCTTCCAGGTGGCCAGCCCTTCCATGGCGTACAGCAACCTCTTGGT 3153
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3154 CAAACAGGCATGCCACCATCTTTTTCAAAGCCCAATATTGAAGGTGCCCCAGGGGCTCCTATTGGAAATACCTT 3227
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3228 CCAGCATGTGCAGTCTTTGCCAACAAAAAAAATTACCAAGAAACCTATTCCAGATGAGCACCTCATTCTAAAGA 3301
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3302 CCACATTTGAGGATCTTATTCAGCGCTGCCTTTCTTCAGCAACAGACCCTCAAACCAAGAGGAAGCTAGATGAT 3375
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3376 GCCAGCAAACGTTTGGAGTTTCTGTATGATAAACTTAGGGAACAGACACTTTCACCAACAATCACCAGTGGTTT 3449
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3450 ACACAACATTGCAAGGAGCATTGAAACTCGAAACTACTCAGAAGGATTGACCATGCATACCCACATAGTTAGCA 3523
Query 1528 -------------------------------------------------------------------------- 1527
Sbjct 3524 CCAGCAACTTCAGTGAGACCTCTGCTTTCATGCCAGTTCTCAAAGTTGTTCTCACCCAGGCCAATAAGCTGGGT 3597
Query 1528 --- 1527
Sbjct 3598 GTC 3600
