Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11674
- Subject:
- XM_006538594.3
- Aligned Length:
- 5199
- Identities:
- 1546
- Gaps:
- 3462
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCGGGAGCCTCTGTGAAGGTCGCTGTTCGAGTGAGGCCCTTCAATTCTCGAGAGACCAGCAAGGAGTCCAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGCATCATTCAGATGCAAGGCAACTCGACCAGTATTATTAACCCAAAGAACCCAAAGGAAGCACCAAAGTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCAGCTTTGACTACTCCTACTGGTCCCACACCTCGCCTGAAGATCCCTGTTTTGCATCGCAGAATCGTGTGTAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATGACATTGGAAAGGAAATGCTCTTACATGCCTTTGAAGGTTATAATGTCTGTATCTTTGCCTATGGGCAGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGCTGGGAAATCCTACACGATGATGGGGAAACAAGAAGAGAGCCAAGCTGGAATCATCCCACAGTTGTGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGAACTCTTTGAGAAGATCAATGACAATTGTAATGAAGAAATGTCTTACTCTGTAGAGGTGAGCTACATGGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTACTGTGAGAGAGTACGAGATTTACTGAATCCCAAAAACAAGGGTAACTTGCGTGTGCGTGAACACCCGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCTTGGACCCTATGTGGAGGATCTGTCCAAGCTGGCGGTCACCTCCTACACTGACATCGCTGACCTGATGGATG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGGGAACAAAGCCAGGACTGTGGCAGCTACCAACATGAATGAGACAAGCAGCCGTTCTCACGCTGTGTTCACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTGTCTTTACCCAGAAGAAACAGGATCCTGAGACGAACCTTTCTACTGAGAAGGTCAGTAAAATCAGCTTGGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGATCTAGCAGGAAGTGAACGGGCTGATTCAACTGGTGCCAAAGGAACTCGATTAAAGGAAGGTGCAAATATCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATAAGTCCCTTACAACTTTGGGCAAAGTCATTTCGGCCTTGGCAGAGGTGGATAACTGCACAAGCAAGAGTAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAGAAGAAGAAAACTGATTTTATTCCTTATAGGGATTCTGTACTTACTTGGCTCCTTCGAGAAAATCTCGGTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CAACTCCCGAACTGCAATGGTTGCTGCTCTGAGCCCAGCCGACATCAACTACGATGAAACTTTGAGCACACTGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GATACGCAGATCGTGCAAAACAAATTAAATGCAATGCTGTTATCAATGAGGACCCGAATGCCAAGCTGGTTCGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGTTGAAGGAGGAAGTGACCCGACTGAAGGACCTTCTTCGTGCTCAGGGACTGGGAGATATTATTGATATTGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCATTGATCGATGATTACTCTGGAAGTGGAGGCAAATATCTGAAAGATTTTCAGAACAATAAGCATAGGTACT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGCTAGCCTCTGAGAATCAACGCCCTGGCAATTTTTCCACAGCATCCATGGGGTCCCTCACTTCATCTCCATCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCATGCTCACTTAATAGTCAGGTGGGCTTAACATCTGTGACCAGTATTCAGGAGAGGATCATGTCTACACCTGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGGGAGGAAGCCATTGAACGTCTGAAGGAGTCAGAGAAGATCATTGCTGAGTTGAATGAAACCTGGGAAGAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACTTCGTAAAACAGAGGCCATCAGAATGGAGAGAGAAGCCTTGTTGGCTGAGATGGGAGTTGCCATACGGGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GATGGGGGGACACTTGGAGTTTTCTCTCCTAAAAAGACCCCACATCTTGTTAACCTCAATGAAGACCCATTAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCGGAGTGTTTGCTCTATTACATCAAGGATGGAATTACAAGGGTTGGCCAGGCAGATGCTGAGCGGCGCCAGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACATAGTGCTGAGTGGGGCCCACATTAAAGAGGAGCATTGTCTCTTTCGGAGTGAGAGGAGCAACACTGGTGAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTATTGTGACCTTGGAGCCCTGTGAGCGCTCAGAAACATACGTGAATGGCAAGAGGGTGGCTCATCCTGTTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GCTGCGCTCAGGGAACCGTATCATCATGGGTAAAAACCATGTTTTTCGTTTTAACCACCCTGAACAAGCGCGAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGAAAGGGAAAAGACTCCCTCAGCTGAGACCCCCTCTGAGCCTGTGGACTGGACCTTTGCTCAGAGAGAGCTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTCGAAAAACAAGGAATTGATATGAAACAGGAGATGGAAAAGAGGCTTCAGGAAATGGAGATCCTTTACAAAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GGAGAAGGAGGAAGCCGATCTTCTCCTGGAGCAGCAGAGACTGGACTACGAGAGTAAATTGCAGGCCTTGCAGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGCAGGTTGAGACTCGATCTCTGGCTGCAGAGACAACGGAAGAGGAGGAAGAGGAGGAGGAAGTTCCTTGGACA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAGCATGAATTTGAGTTGGCCCAGTGGGCGTTCCGGAAATGGAAGTCTCACCAGTTTACTTCATTAAGGGACTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ACTCTGGGGCAATGCGGTGTACCTGAAGGAAGCCAATGCCATCAGTGTGGAACTAAAGAAAAAGGTGCAGTTCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGTTTGTTCTGCTGACTGACACGCTGTACTCCCCTGTGCCTCCTGAACTGCTTCCCTCGGAGATGGAGAAGACG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CACGAGGACAGACCTTTCCCTCGGACTGTGGTGGCGGTGGAGGTCCAGGATCTGAAGAATGGAGCAACACATTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGGTCTTTGGATAAACTCAAGCAGAGACTGGATCTGATGCGAGAGATGTATGACAGGGCAGGGGAGGTGGCCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CCAGTGCCCAAGATGACAGCGAGACGACCATGACCGGCAGCGACCCATTCTACGATCGGTTCCACTGGTTCAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTTGTGGGAAGGGCATTTGTGTACTTGAGCAACCTGCTGTATCCGGTGCCCCTGATTCACAGGGTGGCCATTGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CAGTGAGAAGGGGGAAGTCCGGGGATTTCTTCGTGTGGCTGTGCAGGCCATTGCAGCGGATGAAGAAGCCCCTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATTATGGCTCTGGAATCCGGCAGTCGGGAACAGCTAAAATATCTTTTGATAATGAATACTTTAATCAGAGTGAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTCTCGTCAGCTGCAATGACTCGTTCTGGTCTGTCCTTGGAGGAGCTGAGGATTGTGGAAGGTCAGGGCCAGAG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTCTGAAGTCATCAGTCCTCCAGAAGAAGTCAATCGAATGAACGACCTGGATTTGAAGTCAGGCACTTTGCTGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATGGGAAGATGGTGATGGAAGGGTTTTCTGAAGAGATTGGTAACCACCTGAAGCTGGGCAGTGCCTTCACTTTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CGAGTCACTGTGCTCCAAGCCAGCGGGATCCTTCCAGAGTATGCAGACATCTTCTGTCAGTTCAACTTTTTGCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCGGCATGATGAAGCGTTCTCCACTGAACCCCTCAAGAACAATGGAAGAGGAAGTCCCCTGGGCTTCTACCATG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TACAGAACATTGCGGTGGAGGTCACAGAGTCGTTTGTGGACTACATCAAAACCAAGCCCATTGTATTCGAGGTC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTGGGCACTACCAGCAGCACCCACTCCATCTGCAAGGACAAGATCTTAACAGTCCACCTCAGCCATCTCGGAG 3404
Query 1 ----------------------------------------------------------ATGAGCAAAACCAGCC 16
||||.||||||||.||
Sbjct 3405 ATTCTTCCCCCCACCCATGCCACTCTCCAAGCCAGTTCCAGCTACTAAGTTAAACACCATGAACAAAACCACCC 3478
Query 17 TTGGCCAGAGCATGAGCAAGTATGACCTCCTGGTTTGGTTTGAGATCAGTGAACTGGAGCCTACAGGAGAGTAT 90
||||.||.||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 3479 TTGGGCAAAGCATGAGCAAGTACGACCTTCTGGTTTGGTTTGAGATCAGTGAACTGGAGCCTACTGGAGAGTAT 3552
Query 91 ATCCCAGCTGTGGTTGACCACACAGCAGGCTTGCCTTGCCAGGGGACATTTTTGCTTCATCAGGGCATCCAGCG 164
||.|||||||||||||||||.||.||||||.||||.||||||||||||||||||||.||.||||||||||||||
Sbjct 3553 ATTCCAGCTGTGGTTGACCATACTGCAGGCCTGCCCTGCCAGGGGACATTTTTGCTGCACCAGGGCATCCAGCG 3626
Query 165 AAGGATCACAGTGACCATTATCCATGAGAAGGGGAGCGAGCTCCATTGGAAAGATGTTCGTGAACTGGTGGTAG 238
|.|||||||||||||.||.|||||.||||||||.||.||||||||.|||||||||||.|||||.||||||||||
Sbjct 3627 ACGGATCACAGTGACTATCATCCACGAGAAGGGCAGTGAGCTCCACTGGAAAGATGTCCGTGAGCTGGTGGTAG 3700
Query 239 GTCGTATTCGGAATAAGCCTGAGGTGGATGAAGCTGCAGTTGATGCCATCCTCTCCCTAAATATTATTTCTGCC 312
||||.|||.|||||||.||.|||||.||||||||||||||||||||..|.||.|||||.||.||.||.|||||.
Sbjct 3701 GTCGGATTAGGAATAAACCGGAGGTAGATGAAGCTGCAGTTGATGCTGTTCTTTCCCTGAACATCATCTCTGCT 3774
Query 313 AAGTACCTGAAGTCTTCCCACAACTCTAGCAGGACCTTCTACCGCTTTGAGGCTGTGTGGGATAGCTCTCTGCA 386
||||.|||||||.||.||||||.|||.|||||||||||||||||.||.|||||.||.|||||.|||||.||.||
Sbjct 3775 AAGTCCCTGAAGGCTGCCCACAGCTCCAGCAGGACCTTCTACCGTTTCGAGGCAGTATGGGACAGCTCCCTACA 3848
Query 387 TAACTCCCTTCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCTACATGACCTTGTCGGCCTACCTAGAGC 460
|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||.|||.
Sbjct 3849 TAACTCCCTCCTTCTGAACCGAGTGACACCCTATGGAGAAAAGATCTACATGACCTTATCTGCTTATCTGGAGT 3922
Query 461 TGGATCATTGCATCCAGCCGGCTGTCATCACCAAGGATGTGTGCATGGTCTTCTACTCCCGAGATGCCAAGATC 534
||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||||||
Sbjct 3923 TGGATCATTGCATCCAGCCGGCCGTCATCACTAAGGATGTGTGCATGGTCTTCTATTCCCGAGATGCCAAGATC 3996
Query 535 TCACCACCACGCTCTCTGCGTAGCCTCTTTGGCAGCGGCTACTCAAAGTCACCAGATTCGAATCGAGTCACTGG 608
||||||||.||.||||||||.|.|||||||||.||.||||||||||||||||||||.||.||.|||||.|||||
Sbjct 3997 TCACCACCGCGTTCTCTGCGAAACCTCTTTGGTAGTGGCTACTCAAAGTCACCAGACTCCAACCGAGTGACTGG 4070
Query 609 CATTTACGAACTCAGCTTATGCAAAATGTCAGACACAGGTAGTCCAGGTATGCAGAGAAGGAGAAGAAAAATCT 682
.||.||.||.||.|||||||||||||||.||||.||.||.||.|||||.||||||||..||||.||||||.|||
Sbjct 4071 GATCTATGAGCTGAGCTTATGCAAAATGGCAGATACTGGAAGCCCAGGCATGCAGAGGCGGAGGAGAAAAGTCT 4144
Query 683 TAGATACGTCAGTGGCATATGTGCGGGGAGAAGAGAACTTAGCAGGCTGGCGGCCCCGTGGAGACAGCCTCATC 756
|.|||||.|||||||||||||||||||||||.||||||.||||.||||||||.||.|||||||||||||||||.
Sbjct 4145 TGGATACCTCAGTGGCATATGTGCGGGGAGAGGAGAACCTAGCGGGCTGGCGACCTCGTGGAGACAGCCTCATT 4218
Query 757 CTTGAGCACCAGTGGGAGCTGGAGAAGCTGGAGCTCCTACATGAGGTGGAAAAAACCCGCCACTTTTTGCTGCT 830
||.||.|||||||||||||||||||||||||||||.||.|||||||||||||||||.||||||||.||||||||
Sbjct 4219 CTGGAACACCAGTGGGAGCTGGAGAAGCTGGAGCTGCTGCATGAGGTGGAAAAAACTCGCCACTTCTTGCTGCT 4292
Query 831 GCGTGAGAGACTTGGTGACAGCATCCCCAAATCCCTGAGCGACTCGTTATCCCCCAGCCTCAGCAGTGGGACCC 904
.||.||||||||||||||||||.||||.||.||.|||||.|||||..|.|||||||||||.||||||||.||||
Sbjct 4293 TCGGGAGAGACTTGGTGACAGCGTCCCTAAGTCTCTGAGTGACTCACTGTCCCCCAGCCTGAGCAGTGGAACCC 4366
Query 905 TCAGCACCTCCACCAGTATCTCCTCTCAGATCTCAACCACTACCTTTGAAAGCGCCATCACACCTAGCGAGAGC 978
|.||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||
Sbjct 4367 TTAGCACCTCCACCAGCATCTCCTCTCAGATCTCAACCACCACCTTTGAAAGCGCCATCACACCGAGCGAGAGC 4440
Query 979 AGTGGCTATGATTCAGGAGACATCGAAAGCCTGGTGGACCGAGAGAAAGAGCTGGCTACCAAGTGCCTGCAACT 1052
||||||||.||.||.|.||||.|.|||||||||||.|||||.|||||||||||||||||.|||||||||||.||
Sbjct 4441 AGTGGCTACGACTCGGCAGACGTTGAAAGCCTGGTCGACCGGGAGAAAGAGCTGGCTACAAAGTGCCTGCAGCT 4514
Query 1053 TCTCACCCACACTTTCAACAGAGAATTCAGCCAGGTGCACGGCAGCGTCAGTGACTGTAAGTTGTCTGATATCT 1126
|||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||||.||||
Sbjct 4515 TCTCACCCACACTTTCAACCGAGAATTCAGCCAGGTGCACGGCAGCATCAGTGACTGTAAGTTGTCTGACATCT 4588
Query 1127 CTCCAATTGGACGGGATCCCTCTGAGTCCAGTTTCAGCAGTGCCACCCTCACTCCCTCCTCCACCTGTCCCTCT 1200
||||||||||||||||.|||||||.||||||||||||||||.||||||||||.|||||||||||.||.|||||.
Sbjct 4589 CTCCAATTGGACGGGACCCCTCTGTGTCCAGTTTCAGCAGTTCCACCCTCACGCCCTCCTCCACTTGCCCCTCC 4662
Query 1201 CTGGTAGACTCTAGGAGCAACTCTCTGGATCAGAAGACCCCAGAAGCCAATTCCCGGGCCTCTAGTCCCTGCCC 1274
.||||.|||||.|||||||.||||.|||||||||||||||||||||||||.||.||.|||||.||||||||||.
Sbjct 4663 TTGGTGGACTCCAGGAGCAGCTCTATGGATCAGAAGACCCCAGAAGCCAACTCTCGTGCCTCCAGTCCCTGCCA 4736
Query 1275 AGAATTTGAACAGTTTCAGATTGTCCCAGCTGTGGAAACACCATATTTGGCCCGAGCAGGAAAAAACGAATTTC 1348
|||||||||||||||||||||.||||||.|||||||.|||||.|||||||||||||||||.||.||.|||||||
Sbjct 4737 AGAATTTGAACAGTTTCAGATCGTCCCAACTGTGGAGACACCCTATTTGGCCCGAGCAGGGAAGAATGAATTTC 4810
Query 1349 TCAATCTTGTTCCAGATATTGAAGAAATTAGACCAAGCTCAGTGGTCTCTAAGAAAGGATACCTTCATTTCAAG 1422
||||||||||||||||.|||||||||.|.|||.|..|.||||||||.|||||||||||||||||.||||||||.
Sbjct 4811 TCAATCTTGTTCCAGACATTGAAGAAGTCAGAGCGGGATCAGTGGTATCTAAGAAAGGATACCTGCATTTCAAA 4884
Query 1423 GAGCCTCTTTACAGTAACTGGGCTAAACATTTTGTTGTCGTCCGTCGGCCTTATGTCTTCATCTATAACAGTGA 1496
|||||.||||.|||||||||||||||||||||.|||||.||.|||||.|||||.||||||||||||||||||||
Sbjct 4885 GAGCCACTTTCCAGTAACTGGGCTAAACATTTCGTTGTGGTTCGTCGCCCTTACGTCTTCATCTATAACAGTGA 4958
Query 1497 CAAAGACCCTGTGGAGCGTGGAATCATTAACCTGTCCACAGCACAGGTGGAGTACAGTGAGGACCAGCAGGCCA 1570
|||||||||.||.||||||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||
Sbjct 4959 CAAAGACCCAGTAGAGCGTGGCATCATTAACCTGTCTACAGCACAGGTGGAGTACAGCGAGGACCAGCAGGCCA 5032
Query 1571 TGGTGAAGACACCAAACACATTTGCTGTCTGCACAAAGCACCGTGGGGTCCTTTTGCAGGCCCTCAATGACAAA 1644
|||||||||||||.||.||.||||||||.||||||||||||||||||||||||.||||.||.||||||||||||
Sbjct 5033 TGGTGAAGACACCTAATACTTTTGCTGTATGCACAAAGCACCGTGGGGTCCTTCTGCAAGCTCTCAATGACAAA 5106
Query 1645 GACATGAACGACTGGTTGTATGCCTTCAACCCACTTCTAGCTGGCACAATACGGTCAAAGCTTTCCCGCAGATG 1718
||||||||.||||||||.||||||||.|||||||||||.||||||||||||.|||||||.||.||.||||||||
Sbjct 5107 GACATGAATGACTGGTTATATGCCTTTAACCCACTTCTGGCTGGCACAATAAGGTCAAAACTCTCTCGCAGATG 5180
Query 1719 CCCGAGCCAGTCGAAATAC 1737
||||||||||.|.||.|||
Sbjct 5181 CCCGAGCCAGCCAAAGTAC 5199
