Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11690
- Subject:
- XR_947813.2
- Aligned Length:
- 6612
- Identities:
- 271
- Gaps:
- 6330
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCCGCCCCGTTTCCCGGCCGCGCAAACAAGCGGCTCCTTCTCTCTGCCCCGCCAAAGAAAGGCCGCTTGTCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCGGGCGGGCAGGCGGCAGCGGCAGGCGCCCAACACTGCGGCCTTGTCCCACGCGGGCAGCCTGGGCAGGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGGCCGAGGGGTGCAAGGGGCCGCTACCTTGCGGAAACCTCCCTCCCTCGGCCCTGCGGACCGCGGAGAGGCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTTTCCACCACCGGACACCCAAGCAACAGCCCTCGCTCCATCCGCGCTCTCCCGGCTCCCCCTCTCCTCGGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGCCCATCTCTCCTCTCTTCCGCCTTTGGGGTCCCGGTGGGCCCCAGCCTCCCTCTCCTTCGCCCCATCTCCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCCCGTCAGCCTCCCCTCCGCTGCCCTCGCGCATCCCCAGTGTTCCCGTCTGTCGTCGCCTCCACTTGAGGACC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGCCTGTCCTTTCTTCCCCCGACCCCTCCACCTCTGTGTTCTTCAGTCTCCCCGCATCCTCTGCCCTCGGTCTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCCCTCCCCAGCTTGCATTTTTTCCCATCTCTTAGTCTGCCTTTCATTTTCCCCTTCACATCCCGGTGGCTCCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTTCCCCGCCCCGTCCCTCTGCACACCCCCATTCATCTCTGTCAGGTTTTTCTCATCCTTAAGTTCTCTCGTCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCCTCCCCACTCGGGCGTCCCCCGCTGGGCTCCCCGCCTCAGTTTCCTTCCCTTCCTGACTCCTTCCTCTGACG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCGGCCCTTTCTCGAGGGCGGATGTGCGCCTGGAGGGCGAAGGCGGCGGCCGAGAGGACCCCAGCTCGGCCTGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGGGCCTCTGGCCACAGCCATGCACCGCTTGGGCCGAGGCCGAGGCCGACCCCCAGGGACACAGGAGCTCTGGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCTTAGGACCATGGACGCTCTCAATAGGAACCAAATAGGCCCTGGATGCCAGACCCAGACCATGGTGCAGAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGACCCTTGGACCTGATCGAGACAGGCAAAGGGCTGAAAGTGCAAACGGACAAACCCCACCTGGTGAGCCTGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGTGGGCGACTCAGCACAGCCATCACCCTCCTGCCGCTGGAGGAAGGGAGGACGGTGATTGGCTCTGCAGCCA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAGACATCTCACTACAGGGCCCAGGCCTGGCTCCAGAGCACTGCTACATCGAGAACCTGCGGGGCACCCTCACC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTCTACCCCTGTGGCAATGCCTGCACTATTGATGGGCTCCCTGTCCGGCAGCCTACCCGGCTCACTCAGGGCTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATGTTGTGCCTGGGTCAGTCCACCTTCCTTCGCTTTAACCACCCGGCTGAAGCCAAGTGGATGAAAAGCATGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTCCAGCAGGGGGCCGAGCCCCTGGGCCCCCCTACAGCCCTGTTCCTGCAGAATCAGAAAGTCTGGTAAATGGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AACCACACCCCACAGACTGCAACACGGGGACCCTCTGCCTGTGCCAGCCACAGTTCCCTGGTGAGCTCTATTGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAAGGACCTGCAAGAGATCATGGACTCACTGGTGCTAGAGGAGCCTGGAGCTGCTGGCAAGAAGCCTGCCGCAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CCTCTCCACTGTCACCGATGGCTAATGGTGGGCGCTACCTGCTGTCTCCCCCAACCAGCCCCGGCGCCATGTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGGGCTCCAGCTATGAGAACACCTCTCCAGCCTTCTCTCCACTCTCTTCACCAGCCAGCAGTGGAAGCTGTGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGTCACTCACCCAGTGGGCAAGAGCCAGGACCTTCTGTGCCCCCGCTGGTACCTGCCCGTTCCTCCAGCTACC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATCTGGCCCTACAGCCCCCACAGTCCCGCCCAAGTGGTGCTCGCTCCGAGAGTCCTCGGCTGAGCAGGAAAGGG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGCCATGAGAGGCCTCCCAGCCCTGGCCTCCGGGGTCTGCTGACAGACAGCCCTGCAGCTACTGTCTTGGCGGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGCCCGGAGAGCCACTGAGAGCCCCCGGCTGGGTGGGCAGCTGCCTGTGGTGGCCATCAGCCTGAGTGAATACC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAGCTTCTGGTGCTCTCAGTCAACCCACCAGCATTCCTGGCAGCCCCAAGTTTCAGCCTCCAGTCCCTGCTCCC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CGAAACAAGATTGGCACACTCCAGGACCGCCCTCCCAGCCCTTTCCGTGAGCCTCCAGGCAGTGAGCGGGTGCT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AACAACCAGCCCCTCACGCCAACTGGTGGGCCGAACATTTTCAGATGGGTTAGCCACCCGTACCCTGCAGCCTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGAGAGTCCCCGCCTGGGCCGGCGGGGCCTGGACAGTATGCGAGAACTACCCCCCTTAAGTCCATCTCTGTCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CGGCGAGCTCTCTCCCCGCTGCCCACCCGGACCACCCCAGATCCCAAGCTAAACAGGGAAGTGGCAGAGAGTCC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCGGCCCCGGCGCTGGGCAGCCCATGGGGCTTCACCAGAGGACTTCTCCCTGACGCTGGGGGCACGGGGCCGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGACACGGAGCCCCTCACCCACACTGGGTGAGTCTCTGGCACCCCACAAGGGCAGCTTCAGTGGCAGGCTGAGC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CCAGCCTACAGTCTGGGCTCTCTTACTGGGGCTTCACCCTGCCAGAGTCCCTGTGTCCAGAGGAAGCTCTCCAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CGGGGACTTGCGGGTGCCTGTCACAAGGGAGCGGAAAAATAGCATCACAGAGATCAGTGACAATGAGGACGACC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCCTGGAGTACCACCGGCGACAGCGCCAAGAGCGGCTCCGGGAGCAGGAGATGGAGAGGCTGGAACGCCAGCGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTGGAGACCATCCTGAACCTGTGTGCCGAATACAGCCGGGCTGATGGGGGACCTGAGGCTGGGGAGCTTCCCAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CATTGGGGAGGCCACCGCAGCATTGGCACTGGCAGGCCGGAGGCCCTCACGAGGCCTTGCAGGGGCCTCTGGGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GGAGCAGCGAGGAGCCTGGCGTTGCCACCCAACGCCTATGGGAGAGTATGGAGCGCTCAGATGAGGAAAATCTC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAGGAGGAGTGCAGCAGCACTGAGAGCACCCAGCAGGAGCACGAAGATGCACCTAGCACCAAGCTCCAGGGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGTGCTAGCCCTGGAAGAAGAGCGGGCTCAGGTGCTGGGGCACGTGGAGCAGCTCAAGGTCCGTGTGAAGGAGC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAGAGCAGCAGCTGCAGGAGTCAGCCCGAGAGGCCGAAATGGAGCGGGCACTGCTGCAGGGAGAGAGGGAGGCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAGCGGGCACTGCTGCAGAAGGAGCAGAAGGCAGTGGATCAGCTGCAGGAGAAGCTGGTGGCCTTGGAGACAGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CATCCAGAAGGAGAGGGACAAGGAGAGGGCGGAGCTGGCCGCGGGACGGAGGCACCTGGAGGCCCGCCAGGCGC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCTACGCCGAGCTCCAGACGCAGCTCGATAACTGCCCCGAGTCAGTGCGGGAACAGTTACAGGAGCAGCTGAGA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AGGGAGGCAGAGGCCCTGGAGACTGAGACAAAGCTCTTTGAGGACTTGGAGTTCCAGCAGTTGGAGCGGGAGAG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCGCGTGGAGGAGGAGCGCGAGCTGGCCGGCCAGGGGCTGCTCCGGAGCAAGGCTGAGCTGCTCCGCAGCATCG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CCAAGAGGAAGGAGCGCCTGGCCATCCTGGACAGTCAGGCTGGGCAGATCCGGGCTCAGGCCGTGCAGGAATCA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GAACGCCTGGCCCGGGACAAGAATGCCTCCTTACAGCTGCTGCAAAAGGAGAAGGAGAAGCTGACTGTGCTGGA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AAGGAGATACCACTCACTCACAGGGGGCAGGCCTTTCCCGAAGACCACATCGACCCTCAAAGAGGCCGAGCTGC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCATCTCCGAGTCCTCAGAGATGGGGCTGGGGACTAAGGCTCTGGGCCTTTTCCCAGGGTCTTCTCAGGCTGGG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 GCCTCCTCTGTCTCTTTAACCCCACCTGCTTCCACTCTTCTCTGCCCCAAAGCACAAGAGTACGTGATGCTTGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GCAGCTAAAGGTGATGCGGGGCACCTCGCCCATGCCCCCAGCCCCTGTGCCAGGCCTTTCTCCCTGGGCCTCCG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CCTCCCGGGACCTGGTTCCCACCACCTGCCTTCCTCCCATGCTGCCCTCCTCCTCGTTCGCTTCCATCACGCCT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TCACCTAAGATGGAGAAGCTGCTGCTCCCTGCTGTAGACTTAGAGCAGTGGTACCAGGAGCTGATGGCCGGGCT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGGGACTGGCCCCGCTGCAGCCTCCCCTCACTCTTCTCCCCCGCCTCTGCCCGCCAAAGCTTCCCGTCAGCTGC 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AGGTTTACCGCTCCAAGATGGATGGCGAGGCCACCAGCCCCCTTCCCCGGACCCGCAGCGGCCCCCTCCCCTCC 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 TCCTCTGGCTCTTCCTCCTCCTCCTCCCAGCTCAGCGTGGCTACCCTGGGGCGTAGCCCCTCCCCAAAGAGCGC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TCTACTCACCCAGAATGGCACGGGCAGCCTTCCTCGCAACCTGGCAGCCACACTGCAGGACATCGAGACCAAGC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GCCAACTAGCTCTGCAGCAGAAGGTCGAGTCGCTTCCCGCCGAGCCCCTCCCAACCGACGACCCAGCAGGACAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CAAGTGATTGAAGAGCAGCGGCGGCGACTGGCTGAGCTGAAGCAGAAAGCGGCAGCTGAGGCACAGTGCCAGTG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GGATGCCCTTCACGGGGCAGCACCCTTCCCAGCGGGCCCCTCGGGCTTCCCCCCTCTCATGCACCACTCTATCC 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TACACCACCTGCCTGCGGGGCGGGAGCGTGGGGAGGAGGGTGAGCACGCCTATGATACGCTGAGTCTGGAGAGC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 TCTGACAGCATGGAGACCAGCATCTCCACCGGGGGCAACTCGGCCTGCTCCCCTGACAACATGTCCAGCGCGAG 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TGGTCTGGACATGGGGAAGATCGAGGAGATGGAGAAGATGCTGAAAGAGGCTCATGCAGAGAAGAACCGGCTCA 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 TGGAGTCGAGGGAGCGGGAGATGGAGCTGCGGCGGCAGGCCCTGGAGGAGGAGCGGCGGAGGCGTGAGCAGGTA 4958
Query 1 ------------------------------------------------ATGGGCGGCAAGAT------------ 14
|.||..|.||||||
Sbjct 4959 GAACGGAGGCTGCAGAGTGAGAGTGCCCGGAGGCAGCAGCTGGTCGAGAAGGAGGTCAAGATGCGGGAGAAACA 5032
Query 15 ----------------------------TA------AATCATGGAAGAAGCGCTGGTTTGTCTTCGACCGGCTC 54
|| |||| .|||||.|| |.|||.||| ||.
Sbjct 5033 ATTTTCCCAGGCACGACCCCTGACCCGCTACCTGCCAATC-CGGAAGGAG---------GACTTTGAC---CTG 5093
Query 55 AAG-CGCACCCTTTCCTATT----------------------------------ATGTG--------------G 79
||| |.|| |||| |.||| |
Sbjct 5094 AAGACACA--------TATTGAGTCATCGGGCCATGGTGTTGATACCTGCCTGCACGTGGTGCTCAGCAGCAAG 5159
Query 80 ACAAGCATGAGACGAAGCTGAAGGGAGTCATCTATTTCCAGGCCATTGAGGAAGTGTACTACGACCACCTGCGC 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5160 ACAAGCATGAGACGAAGCTGAAGGGAGTCATCTATTTCCAGGCCATTGAGGAAGTGTACTACGACCACCTGCGC 5233
Query 154 AGTGCAGCCAAGAGCCCGAACCCAGCCCTCACCTTCTGCGTAAAGACCCATGACCGGCTGTACTACATGGTGGC 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5234 AGTGCAGCCAAGAGCCCGAACCCAGCCCTCACCTTCTGCGTAAAGACCCATGACCGGCTGTACTACATGGTGGC 5307
Query 228 CCCATCTGCAGAGGCCATGCGTATCTGGATGGATGTCATTGTCACAGGGGCTGAGGGCTACACTCAGTTCATGA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5308 CCCATCTGCAGAGGCCATGCGTATCTGGATGGATGTCATTGTCACAGGGGCTGAGGGCTACACTCAGTTCATGA 5381
Query 302 AC------------------------------------------------------------------------ 303
||
Sbjct 5382 ACTAACTGCCGTGGGCCTCCTGGCAGAGCACAACTGGGGCTTTTGTATAAGAAGACTTTAATATTCTGTAAGGA 5455
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5456 GCTTGGTCCTGTGAGTTTCTGGGCTCTGGCCTCCTGAAGAACCAGCCAGAAGAAGAAAAGTAGAGGTGGCTTTG 5529
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5530 CTGCCTCCTGGGAGCCCAGAACTTGCAGTAACCCTTTAGGGTCCTGCCCCAGGCCCAGCCAGGGCTGAGGAGCT 5603
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5604 GTCACAGAGAGGGCCTCAGCTCTGACCTGACACCTGCTCTCCCCAGCCTGTTTTCTCTTTTCTAAAAGACAAAT 5677
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5678 TATGGTACCATAAGCTGCCAAAGATCCCCTCCTGCCTCAGACCCCTTTGCCAGGGGCTTTGGGGGCTGAGCAGA 5751
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5752 GCCACATCCAGAGTGGGGTAATAGCTCAGGCGGCCCGCTTCCCATTTCTCAAACCCCGCTCTGCCCCATTGTTC 5825
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5826 TCCTTTCCCTTATACTTTTTATTACCTTGCTCAAGGGCCAGAGATCTCAAGTGTCAACCTTGAGGTCCCAGCTC 5899
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5900 CATCCCCTAGTTGCAGACTCATCACCATGGTTACCATAGTGACTGCTTCATTGCCATGGTTACATACTAATTGC 5973
Query 304 -------------------------------------------------------------------------- 303
Sbjct 5974 TGCAGCTCTGTGGCCCAGCCCACTGCTTCAGCTGTGGGCCATCTGAGGGTACGTGCCATCATCTCTCCAGCCCA 6047
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6048 GGCCCCTGGGCATCTCATGCTGGGGGGAAGGGACTGAATACCTTTTTCCTTCCCCCTGCCTGTGTCTTCAGCCC 6121
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6122 TGATGCACAGGCTGCCAGCCCCCCAGTCCAGCCCTCTCCCTTCCACTGGTGCCTTGCTTAGAGCCAGAAGGGAT 6195
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6196 GAAGCCGGGGGATCTATGGAACAGAGGAGGAGCGATGCAGTTGGGAGAGGAAGCTAGAAGGGTTATGGTTGGAG 6269
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6270 TTCTGTACAGTGTTGAGTTTCCGACAGGGAAAGAGGATTCCTCCAATGCTCCTAGAGAGAAAGCCTGAGCAGGA 6343
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6344 GATGATGCAGCAGAGGGGAAGGGCCCTGTGGTGCCGCCGCCCTTCCTTCAGCCTCCGAAGGGTGATGGAAATGG 6417
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6418 AGAGTGGAGGACCAGGCCTCCAGCTGTCTGGCCTCGCCCTTCACGCCTTAACACTAAGCCCACCTCCCCTGCTC 6491
Query 304 -------------------------------------------------------------------------- 303
Sbjct 6492 TCCTTCCCAGCATTGAGCCCTTGGTTGCCTGGGCCCAGGCTGGGGGTTTTCAGTATTTGTAAGCATTTCAGCAG 6565
Query 304 -------------------------- 303
Sbjct 6566 AACAATAAAGCCTTTGGACTACGGAA 6591
