Construct: ORF ccsbBroadEn_11690

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001278.1_s300c1, BRDN0000388646
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PHLDB1 (23187)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23187 PHLDB1 pleckstrin homology like do... XM_011542715.3 14% 14% 1_1860del
2 human 23187 PHLDB1 pleckstrin homology like do... NM_001144759.3 7.6% 7.6% 1_3654del
3 human 23187 PHLDB1 pleckstrin homology like do... XM_005271474.5 7.5% 7.5% 1_3720del
4 human 23187 PHLDB1 pleckstrin homology like do... XM_005271473.3 7.3% 7.3% 1_3792del;3956_3988del
5 human 23187 PHLDB1 pleckstrin homology like do... NM_001144758.3 7.3% 7.3% 1_3795del;3959_3991del
6 human 23187 PHLDB1 pleckstrin homology like do... NM_015157.4 7.3% 7.3% 1_3795del;3959_3991del
7 human 23187 PHLDB1 pleckstrin homology like do... XM_005271472.3 7.2% 7.2% 1_3837del;4001_4033del
8 human 23187 PHLDB1 pleckstrin homology like do... XM_006718803.3 7.1% 7.1% 1_3921del
9 human 23187 PHLDB1 pleckstrin homology like do... XM_005271471.3 7.1% 7.1% 1_3933del
10 human 23187 PHLDB1 pleckstrin homology like do... XM_006718802.3 7.1% 7.1% 1_3921del;4085_4117del
11 human 23187 PHLDB1 pleckstrin homology like do... XM_011542713.2 7.1% 7.1% 1_3921del;4085_4117del
12 human 23187 PHLDB1 pleckstrin homology like do... XM_011542711.2 7.1% 7.1% 1_3924del;4088_4120del
13 human 23187 PHLDB1 pleckstrin homology like do... XM_005271470.3 7% 7% 1_3933del;4097_4129del
14 human 23187 PHLDB1 pleckstrin homology like do... XM_005271469.3 7% 7% 1_3978del
15 human 23187 PHLDB1 pleckstrin homology like do... XM_006718801.3 7% 7% 1_3966del;4130_4162del
16 human 23187 PHLDB1 pleckstrin homology like do... XM_005271468.3 7% 7% 1_3978del;4142_4174del
17 human 23187 PHLDB1 pleckstrin homology like do... XM_006718800.3 6.9% 6.9% 1_4062del
18 human 23187 PHLDB1 pleckstrin homology like do... XM_006718799.3 6.8% 6.8% 1_4062del;4226_4258del
19 human 23187 PHLDB1 pleckstrin homology like do... XM_006718798.3 6.8% 6.8% 1_4107del;4271_4303del
20 human 23187 PHLDB1 pleckstrin homology like do... XM_017017410.1 6.7% 6.7% 1_4149del;4313_4345del
21 human 23187 PHLDB1 pleckstrin homology like do... XM_017017409.1 6.7% 6.7% 1_4206del
22 human 23187 PHLDB1 pleckstrin homology like do... XM_017017408.1 6.6% 6.6% 1_4233del
23 human 23187 PHLDB1 pleckstrin homology like do... XM_011542710.2 6.6% 6.6% 1_4251del;4415_4447del
24 human 23187 PHLDB1 pleckstrin homology like do... XM_006718797.3 6.5% 6.5% 1_4278del;4442_4474del
25 human 23187 PHLDB1 pleckstrin homology like do... XM_006718796.4 6.5% 6.5% 1_4281del;4445_4477del
26 human 23187 PHLDB1 pleckstrin homology like do... XM_011542708.3 6.5% 6.5% 1_4284del;4448_4480del
27 human 23187 PHLDB1 pleckstrin homology like do... XM_011542709.2 6.5% 6.5% 1_4284del;4448_4480del
28 human 23187 PHLDB1 pleckstrin homology like do... XM_017017407.1 6.5% 6.5% 1_4290del;4454_4486del
29 human 23187 PHLDB1 pleckstrin homology like do... XM_011542707.2 6.5% 6.5% 1_4293del;4457_4489del
30 human 23187 PHLDB1 pleckstrin homology like do... XM_011542706.2 6.4% 6.4% 1_4377del
31 human 23187 PHLDB1 pleckstrin homology like do... XM_011542705.2 6.4% 6.4% 1_4377del;4541_4573del
32 human 23187 PHLDB1 pleckstrin homology like do... XM_011542704.2 6.4% 6.4% 1_4422del
33 human 23187 PHLDB1 pleckstrin homology like do... XM_005277680.3 6.3% 6.3% 1_4419del;4583_4615del
34 human 23187 PHLDB1 pleckstrin homology like do... XM_011542703.2 6.3% 6.3% 1_4422del;4586_4618del
35 human 23187 PHLDB1 pleckstrin homology like do... XR_947813.2 4% (many diffs)
36 human 23187 PHLDB1 pleckstrin homology like do... XR_001747797.1 4% (many diffs)
37 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509933.3 13.6% 14.7% (many diffs)
38 mouse 102693 Phldb1 pleckstrin homology like do... XM_017313091.2 10.7% 11.5% (many diffs)
39 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243983.1 7.7% 8.3% (many diffs)
40 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243982.1 7.3% 8% (many diffs)
41 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243981.1 7.2% 7.8% (many diffs)
42 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243980.1 7.1% 7.7% (many diffs)
43 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243978.1 7% 7.6% (many diffs)
44 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243976.1 6.9% 7.5% (many diffs)
45 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243975.1 6.8% 7.4% (many diffs)
46 mouse 102693 Phldb1 pleckstrin homology like do... NM_153537.4 6.8% 7.3% (many diffs)
47 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243974.1 6.7% 7.3% (many diffs)
48 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243979.1 6.7% 7.2% (many diffs)
49 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243973.1 6.7% 7.2% (many diffs)
50 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243972.1 6.6% 7.1% (many diffs)
51 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243971.1 6.6% 7.1% (many diffs)
52 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243970.1 6.6% 7.1% (many diffs)
53 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509928.4 6.5% 7% (many diffs)
54 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243977.1 6.5% 7% (many diffs)
55 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243969.1 6.4% 7% (many diffs)
56 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243968.1 6.4% 6.9% (many diffs)
57 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243967.1 6.4% 6.9% (many diffs)
58 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243966.1 6.3% 6.8% (many diffs)
59 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243965.1 6.3% 6.8% (many diffs)
60 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243964.1 6.2% 6.8% (many diffs)
61 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243963.1 6.2% 6.7% (many diffs)
62 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243962.1 6.1% 6.7% (many diffs)
63 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243961.1 6.1% 6.6% (many diffs)
64 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243960.1 6.1% 6.6% (many diffs)
65 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243957.1 6.1% 6.6% (many diffs)
66 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243958.1 6.1% 6.6% (many diffs)
67 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243956.1 6% 6.5% (many diffs)
68 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243955.1 6% 6.5% (many diffs)
69 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243953.1 6% 6.5% (many diffs)
70 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243954.1 6% 6.5% (many diffs)
71 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509907.3 6% 6.4% (many diffs)
72 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509916.3 6% 6.4% (many diffs)
73 mouse 102693 Phldb1 pleckstrin homology like do... XM_006509919.4 6% 6.4% (many diffs)
74 mouse 102693 Phldb1 pleckstrin homology like do... XM_030243959.1 4.3% 3.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
369
ORF length:
303
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CGGCAAGATT AAATCATGGA AGAAGCGCTG GTTTGTCTTC GACCGGCTCA
121AGCGCACCCT TTCCTATTAT GTGGACAAGC ATGAGACGAA GCTGAAGGGA GTCATCTATT
181TCCAGGCCAT TGAGGAAGTG TACTACGACC ACCTGCGCAG TGCAGCCAAG AGCCCGAACC
241CAGCCCTCAC CTTCTGCGTA AAGACCCATG ACCGGCTGTA CTACATGGTG GCCCCATCTG
301CAGAGGCCAT GCGTATCTGG ATGGATGTCA TTGTCACAGG GGCTGAGGGC TACACTCAGT
361TCATGAACTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
421tttgttgcaa cgaac

Download FASTA (ORF) (Full)