Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11710
- Subject:
- XM_011539559.2
- Aligned Length:
- 4731
- Identities:
- 2463
- Gaps:
- 2262
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGGCTGGCTCAGTGGTTCGAGCCATTTTTGACTTCTGCCCTAGCGTATCAGAAGAACTGCCGCTCTTTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGAGATATTATTGAGGTGCTGGCAGTGGTGGATGAATTTTGGCTTCTAGGAAAGAAGGAGGATGTTACAGGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATTCCCCAGCAGTTTTGTGGAAATTGTGACCATTCCCAGTCTAAAAGAGGGAGAGAGGCTGTTTGTGTGCATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGTGAATTCACATCCCAAGAGTTGGATAATCTTCCCCTCCATCGAGGTGACCTGGTGATTCTCGATGGCATTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACTGCAGGCTGGCTGCAGGGCCGAAGCTGCTGGGGCGCACGGGGCTTCTTCCCATCTTCATGTGTCCGCGAGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTGCCTCTCCTCACAGAGCCGGCAGTGGCACTCCCAGAGCGCCCTGTTTCAGATTCCGGAATATTCCATGGGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAAGCCCGGGCCCTAATGGGGCTTTCTGCTCAGCTGGATGAAGAGCTGGACTTCAGGGAAGGGGATGTGATCAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CATTATTGGAGTTCCTGAACCAGGCTGGTTTGAAGGGGAGTTAGAGGGCCGAAGAGGCATTTTTCCAGAAGGTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGTAGAGCTGTTGGGGCCCCTGAGGACTGTGGATGAGTCAGTAAGTTCTGGAAATCAAGATGACTGCATTGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AATGGTGAAGTAGATACCCCTGTAGGAGAAGAAGAGATAGGGCCGGATGAGGATGAGGAGGAGCCAGGGACCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGGGGTCGCCCTGTACAGATTCCAAGCCCTGGAGCCAAATGAGCTGGATTTCGAGGTCGGGGATAAAATCCGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTGGCGACCTTGGAAGATGGCTGGCTGGAAGGATCCCTGAAGGGCAGGACAGGCATCTTTCCTTACCGGTTT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTGAAATTATGTCCTGACACACGGGTGGAGGAAACCATGGCTCTGCCCCAGGAAGGCAGCCTTGCCAGGATCCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAAACTTCTTTGGATTGTTTGGAGAACACCTTAGGAGTAGAGGAACAAAGACATGAAACCAGTGACCATGAGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCGAGGAGCCTGACTGCATTATTTCTGAAGCACCCACTTCTCCCCTCGGTCATCTGACTTCAGAGTATGACACA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GACAGAAACTCTTATCAGGACGAGGACACCGCAGGAGGGCCCCCGAGAAGCCCAGGCGTGGAGTGGGAAATGCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTTGCCACAGACTCTCCCACATCTGACCCTACAGAAGTAGTCAATGGTATTTCCTCCCAACCTCAGGTCCCTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTCATCCCAACTTGCAGAAAAGCCAGTATTATTCTACAGTGGGAGGGAGCCACCCGCACTCAGAACAGTACCCC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GACCTTCTTCCCCTAGAAGCAAGGACTAGAGACTATGCCAGCCTACCTCCCAAAAGAATGTATTCCCAGCTAAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AACTCTTCAGAAGCCAGTGCTCCCTCTTTACAGGGGCTCTTCTGTTTCAGCTTCAAGGGTAGTCAAACCCAGAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATCAAGTCCTCAGCTCCACAACCTAGCAAGTTATACTAAAAAGCACCACACGTCCAGTGTTTACTCCATCTCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAGAGATTGGAGATGAAGCCTGGTCCGCAAGCCCAAGGGCTTGTTATGGAAGCAGCAACACATTCACAGGGAGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CGGCAGCACTGACCTGGACTCGAAGCTGACACAACAGCTGATCGAGTTTGAGAAGAGCTTGGCAGGGCCCGGCA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGAGCCAGATAAAATTTTACGCCACTTTTCAATCATGGACTTTAACTCTGAGAAGGATATTGTCCGAGGTTCC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCAAAGTTAATCACCGAGCAGGAGCTGCCGGAAAGGAGAAAGGCCCTAAGGCCACCGCCACCTCGTCCCTGTAC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCCGGTATCCACTTCTCCCCATTTGCTGGTTGACCAGAACCTAAAACCTGCACCACCCTTGGTGGTGCGACCCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCGCCCAGCTCCCCTGCCTCCCTCAGCACAGCAGAGAACGAATGCGGTATCCCCCAAGCTCCTATCTCGACAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CGTCCTACCTGTGAGACCTTAGAAAAGGAGGGCCCTGGTCATATGGGAAGGAGTCTGGACCAGACCTCCCCATG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCCTTAGTGCTGGTGAGGATTGAGGAAATGGAGCGGGACTTGGATATGTACAGTAGAGCTCAAGAAGAGCTAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACCTCATGCTGGAGGAGAAGCAGGATGAATCATCAAGAGCAGAGACCCTCGAGGATCTCAAGTTCTGTGAAAGT 2220
Query 1 ------------------------------------------ATGACGCTCCTCTCCTCCCAGTCTTCATCACT 32
||||||||||||||||||||||||||||||||
Sbjct 2221 AACATTGAAAGTTTGAATATGGAACTCCAGCAACTAAGAGAAATGACGCTCCTCTCCTCCCAGTCTTCATCACT 2294
Query 33 GGTGGCCCCTTCTGGGTCTGTGTCTGCCGAAAATCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTCATAG 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GGTGGCCCCTTCTGGGTCTGTGTCTGCCGAAAATCCAGAGCAGAGGATGCTGGAGAAGAGAGCCAAGGTCATAG 2368
Query 107 AAGAACTTCTTCAGACAGAAAGAGACTACATTCGGGATCTGGAAATGTGTATTGAGCGGATCATGGTACCCATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AAGAACTTCTTCAGACAGAAAGAGACTACATTCGGGATCTGGAAATGTGTATTGAGCGGATCATGGTACCCATG 2442
Query 181 CAGCAGGCACAGGTACCAAACATTGATTTTGAGGGACTTTTTGGAAATACGCAGATGGTGATTAAGGTCTCAAA 254
|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.||
Sbjct 2443 CAGCAGGCACAGGTACCAAACATTGATTTTGAGGGACTTTTTGGAAATATGCAGATGGTGATTAAGGTCTCGAA 2516
Query 255 GCAATTATTGGCTGCTCTGGAAATCAGCGATGCTGTAGGACCTGTGTTTCTTGGTCACCGGGATGAGCTTGAGG 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GCAATTATTGGCTGCTCTGGAAATCAGCGATGCTGTAGGACCTGTGTTTCTTGGTCACCGGGATGAGCTTGAGG 2590
Query 329 GAACATACAAGATTTACTGCCAGAATCATGATGAGGCCATTGCGCTGCTTGAAATCTACGAGAAGGATGAGAAG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 GAACATACAAGATTTACTGCCAGAATCATGATGAGGCCATTGCGCTGCTTGAAATCTACGAGAAGGATGAGAAG 2664
Query 403 ATCCAGAAGCATCTTCAGGACTCCTTGGCAGATCTGAAGAGCCTATACAACGAATGGGGATGCACAAATTATAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ATCCAGAAGCATCTTCAGGACTCCTTGGCAGATCTGAAGAGCCTATACAACGAATGGGGATGCACAAATTATAT 2738
Query 477 TAACCTGGGCTCCTTCCTCATCAAACCAGTACAGAGAGTAATGCGTTACCCGCTGTTGCTAATGGAGTTGCTGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 TAACCTGGGCTCCTTCCTCATCAAACCAGTACAGAGAGTAATGCGTTACCCGCTGTTGCTAATGGAGTTGCTGA 2812
Query 551 ATTCCACCCCAGAATCCCACCCAGATAAAGTGCCTTTAACCAATGCAGTCCTTGCGGTCAAGGAAATCAATGTT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 2813 ATTCCACCCCAGAATCCCACCCAGATAAAGTGCCTTTAACCAATGCAGTCCTTGCGGTCAAGGAAATCAACGTT 2886
Query 625 AACATTAATGAATATAAACGGCGAAAGGACCTGGTCCTCAAGTACCGTAAGGGTGATGAAGATAGCCTTATGGA 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 AACATTAATGAATATAAACGGCGAAAGGACCTGGTCCTCAAGTACCGTAAGGGTGATGAAGATAGCCTTATGGA 2960
Query 699 GAAAATTTCCAAACTGAACATCCACTCCATCATCAAGAAATCCAACCGAGTTAGCAGTCACCTGAAGCATCTCA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 GAAAATTTCCAAACTGAACATCCACTCCATCATCAAGAAATCCAACCGAGTTAGCAGTCACCTGAAGCATCTCA 3034
Query 773 CTGGCTTTGCTCCTCAGATAAAAGATGAAGTATTTGAAGAAACAGAAAAAAACTTCCGAATGCAAGAAAGATTG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 CTGGCTTTGCTCCTCAGATAAAAGATGAAGTATTTGAAGAAACAGAAAAAAACTTCCGAATGCAAGAAAGATTG 3108
Query 847 ATTAAGTCTTTTATCCGAGACCTGTCTCTCTACCTCCAGCACATCCGGGAGTCCGCATGTGTGAAAGTGGTGGC 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 ATTAAGTCTTTTATCCGAGACCTGTCTCTCTACCTCCAGCACATCCGGGAGTCCGCATGTGTGAAAGTGGTGGC 3182
Query 921 TGCTGTGAGCATGTGGGATGTGTGCATGGAGAGAGGACACCGGGACCTGGAGCAGTTTGAGAGGGTGCATCGCT 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 TGCTGTGAGCATGTGGGATGTGTGCATGGAGAGAGGACACCGGGACCTGGAGCAGTTTGAGAGGGTGCATCGCT 3256
Query 995 ACATCAGTGACCAGCTCTTCACAAACTTTAAGGAGAGGACAGAGCGGCTTGTCATCTCCCCCTTAAATCAGTTA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 ACATCAGTGACCAGCTCTTCACAAACTTTAAGGAGAGGACAGAGCGGCTTGTCATCTCCCCCTTAAATCAGTTA 3330
Query 1069 CTGAGCATGTTTACAGGGCCCCATAAGCTGGTACAGAAACGCTTTGACAAGCTCCTGGACTTCTATAACTGTAC 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CTGAGCATGTTTACAGGGCCCCATAAGCTGGTACAGAAACGCTTTGACAAGCTCCTGGACTTCTATAACTGTAC 3404
Query 1143 AGAACGGGCAGAAAAGCTAAAGGACAAGAAGACCCTGGAGGAGCTGCAGTCGGCCCGGAACAACTATGAGGCCC 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 AGAACGGGCAGAAAAGCTAAAGGACAAGAAGACCCTGGAGGAGCTGCAGTCGGCCCGGAACAACTATGAGGCCC 3478
Query 1217 TGAATGCACAGCTGCTGGATGAGCTGCCCAAGTTCCACCAGTACGCCCAGGGCCTCTTCACCAACTGTGTCCAC 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 TGAATGCACAGCTGCTGGATGAGCTGCCCAAGTTCCACCAGTACGCCCAGGGCCTCTTCACCAACTGTGTCCAC 3552
Query 1291 GGCTATGCTGAAGCCCACTGTGACTTTGTGCACCAGGCTCTGGAGCAATTAAAGCCACTGCTTTCGTTACTCAA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 GGCTATGCTGAAGCCCACTGTGACTTTGTGCACCAGGCTCTGGAGCAATTAAAGCCACTGCTTTCGTTACTCAA 3626
Query 1365 AGTGGCTGGCAGAGAGGGAAACCTTATTGCCATCTTCCACGAAGAGCACAGCAGAGTTCTGCAGCAACTCCAGG 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 AGTGGCTGGCAGAGAGGGAAACCTTATTGCCATCTTCCACGAAGAGCACAGCAGAGTTCTGCAGCAACTCCAGG 3700
Query 1439 TTTTTACCTTCTTCCCGGAGTCTCTTCCAGCTACCAAGAAGCCGTTTGAGAGGAAAACCATTGACCGCCAGTCT 1512
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 3701 TTTTTACCTTCTTCCCGGAGTCTCTTCCAGCTACCAAGAAGCCATTTGAGAGGAAAACCATTGACCGCCAGTCT 3774
Query 1513 GCTCGAAAGCCACTCCTGGGCCTGCCAAGTTACATGCTACAGTCAGAAGAACTCCGGGCCTCCCTCCTGGCCAG 1586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GCTCGAAAGCCACTCCTGGGCCTGCCAAGTTACATGCTACAGTCAGAAGAACTCCGGGCCTCCCTCCTGGCCAG 3848
Query 1587 GTATCCCCCTGAAAAACTCTTCCAGGCAGAACGGAACTTCAATGCTGCTCAAGACTTGGATGTCTCACTTTTGG 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GTATCCCCCTGAAAAACTCTTCCAGGCAGAACGGAACTTCAATGCTGCTCAAGACTTGGATGTCTCACTTTTGG 3922
Query 1661 AAGGTGACCTGGTGGGTGTGATTAAGAAAAAAGACCCCATGGGCAGCCAGAACCGCTGGCTGATTGACAATGGA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 AAGGTGACCTGGTGGGTGTGATTAAGAAAAAAGACCCCATGGGCAGCCAGAACCGCTGGCTGATTGACAATGGA 3996
Query 1735 GTCACCAAAGGCTTCGTGTACAGCTCTTTCCTAAAGCCCTACAATCCTCGCCGCAGCCACTCCGATGCCTCCGT 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 GTCACCAAAGGCTTCGTGTACAGCTCTTTCCTAAAGCCCTACAATCCTCGCCGCAGCCACTCCGATGCCTCCGT 4070
Query 1809 GGGTAGCCACTCCTCCACAGAGTCTGAGCACGGCAGCTCCTCCCCCAGGTTCCCACGCCAGAACAGCGGCAGCA 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 GGGTAGCCACTCCTCCACAGAGTCTGAGCACGGCAGCTCCTCCCCCAGGTTCCCACGCCAGAACAGCGGCAGCA 4144
Query 1883 CCCTGACCTTCAACCCCAGCAGCATGGCTGTATCCTTTACCTCGGGGTCTTGCCAGAAGCAGCCTCAAGATGCA 1956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 CCCTGACCTTCAACCCCAGCAGCATGGCTGTATCCTTTACCTCGGGGTCTTGCCAGAAGCAGCCTCAAGATGCA 4218
Query 1957 TCTCCTCCGCCAAAAGAATGGGACCAAGGAACTCTCAGTGCATCCCTAAATCCGAGTAATTCAGAGAGTAGTCC 2030
||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 TCTCCTCCGCCAAAAGAATGTGACCAAGGAACTCTCAGTGCATCCCTAAATCCGAGTAATTCAGAGAGTAGTCC 4292
Query 2031 TTCCAGATGCCCTTCAGACCCAGACTCTACCTCCCAGCCAAGGTCAGGGGACTCTGCAGATGTAGCTAGAGATG 2104
|||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 TTCCAGATGCCCTTCAGACCCAGACTCCACCTCCCAGCCAAGGTCAGGGGACTCTGCAGATGTAGCTAGAGATG 4366
Query 2105 TAAAGCAACCCACTGCCACGCCGAGGAGCTACCGGAACTTCAGGCATCCAGAAATAGTTGGCTACTCCGTACCA 2178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 TAAAGCAACCCACTGCCACGCCGAGGAGCTACCGGAACTTCAGGCATCCAGAAATAGTTGGCTACTCCGTACCA 4440
Query 2179 GGACGAAATGGGCAAAGTCAAGACCTCGTCAAAGGATGTGCAAGAACAGCCCAGGCTCCGGAAGACAGAAGTAC 2252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4441 GGACGAAATGGGCAAAGTCAAGACCTCGTCAAAGGATGTGCAAGAACAGCCCAGGCTCCGGAAGACAGAAGTAC 4514
Query 2253 AGAGCCAGATGGCAGTGAGGCAGAAGGCAACCAGGTCTATTTTGCTGTCTACACCTTCAAGGCACGAAACCCAA 2326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 AGAGCCAGATGGCAGTGAGGCAGAAGGCAACCAGGTCTATTTTGCTGTCTACACCTTCAAGGCACGAAACCCAA 4588
Query 2327 ATGAGCTGAGCGTGTCAGCCAATCAGAAACTCAAGATCCTCGAGTTTAAAGATGTTACAGGAAATACAGAGTGG 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589 ATGAGCTGAGCGTGTCAGCCAATCAGAAACTCAAGATCCTCGAGTTTAAAGATGTTACAGGAAATACAGAGTGG 4662
Query 2401 TGGTTAGCTGAGGTTAACGGGAAGAAGGGCTACGTTCCCTCCAATTATATCCGCAAAACCGAGTACACC 2469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663 TGGTTAGCTGAGGTTAACGGGAAGAAGGGCTACGTTCCCTCCAATTATATCCGCAAAACCGAGTACACC 4731
