Construct: ORF ccsbBroadEn_11710
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006332.1_s300c1, BRDN0000390461
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNMBP (23268)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23268 | DNMBP | dynamin binding protein | NM_001318327.1 | 94.9% | 94.9% | (many diffs) |
| 2 | human | 23268 | DNMBP | dynamin binding protein | NM_001318326.2 | 67.9% | 67.9% | (many diffs) |
| 3 | human | 23268 | DNMBP | dynamin binding protein | NM_015221.4 | 52% | 52% | (many diffs) |
| 4 | human | 23268 | DNMBP | dynamin binding protein | XM_011539559.2 | 52% | 52% | (many diffs) |
| 5 | human | 23268 | DNMBP | dynamin binding protein | XM_006717735.3 | 49.3% | 49.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2535
- ORF length:
- 2469
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC GCTCCTCTCC TCCCAGTCTT CATCACTGGT GGCCCCTTCT GGGTCTGTGT 121 CTGCCGAAAA TCCAGAGCAG AGGATGCTGG AGAAGAGAGC CAAGGTCATA GAAGAACTTC 181 TTCAGACAGA AAGAGACTAC ATTCGGGATC TGGAAATGTG TATTGAGCGG ATCATGGTAC 241 CCATGCAGCA GGCACAGGTA CCAAACATTG ATTTTGAGGG ACTTTTTGGA AATACGCAGA 301 TGGTGATTAA GGTCTCAAAG CAATTATTGG CTGCTCTGGA AATCAGCGAT GCTGTAGGAC 361 CTGTGTTTCT TGGTCACCGG GATGAGCTTG AGGGAACATA CAAGATTTAC TGCCAGAATC 421 ATGATGAGGC CATTGCGCTG CTTGAAATCT ACGAGAAGGA TGAGAAGATC CAGAAGCATC 481 TTCAGGACTC CTTGGCAGAT CTGAAGAGCC TATACAACGA ATGGGGATGC ACAAATTATA 541 TTAACCTGGG CTCCTTCCTC ATCAAACCAG TACAGAGAGT AATGCGTTAC CCGCTGTTGC 601 TAATGGAGTT GCTGAATTCC ACCCCAGAAT CCCACCCAGA TAAAGTGCCT TTAACCAATG 661 CAGTCCTTGC GGTCAAGGAA ATCAATGTTA ACATTAATGA ATATAAACGG CGAAAGGACC 721 TGGTCCTCAA GTACCGTAAG GGTGATGAAG ATAGCCTTAT GGAGAAAATT TCCAAACTGA 781 ACATCCACTC CATCATCAAG AAATCCAACC GAGTTAGCAG TCACCTGAAG CATCTCACTG 841 GCTTTGCTCC TCAGATAAAA GATGAAGTAT TTGAAGAAAC AGAAAAAAAC TTCCGAATGC 901 AAGAAAGATT GATTAAGTCT TTTATCCGAG ACCTGTCTCT CTACCTCCAG CACATCCGGG 961 AGTCCGCATG TGTGAAAGTG GTGGCTGCTG TGAGCATGTG GGATGTGTGC ATGGAGAGAG 1021 GACACCGGGA CCTGGAGCAG TTTGAGAGGG TGCATCGCTA CATCAGTGAC CAGCTCTTCA 1081 CAAACTTTAA GGAGAGGACA GAGCGGCTTG TCATCTCCCC CTTAAATCAG TTACTGAGCA 1141 TGTTTACAGG GCCCCATAAG CTGGTACAGA AACGCTTTGA CAAGCTCCTG GACTTCTATA 1201 ACTGTACAGA ACGGGCAGAA AAGCTAAAGG ACAAGAAGAC CCTGGAGGAG CTGCAGTCGG 1261 CCCGGAACAA CTATGAGGCC CTGAATGCAC AGCTGCTGGA TGAGCTGCCC AAGTTCCACC 1321 AGTACGCCCA GGGCCTCTTC ACCAACTGTG TCCACGGCTA TGCTGAAGCC CACTGTGACT 1381 TTGTGCACCA GGCTCTGGAG CAATTAAAGC CACTGCTTTC GTTACTCAAA GTGGCTGGCA 1441 GAGAGGGAAA CCTTATTGCC ATCTTCCACG AAGAGCACAG CAGAGTTCTG CAGCAACTCC 1501 AGGTTTTTAC CTTCTTCCCG GAGTCTCTTC CAGCTACCAA GAAGCCGTTT GAGAGGAAAA 1561 CCATTGACCG CCAGTCTGCT CGAAAGCCAC TCCTGGGCCT GCCAAGTTAC ATGCTACAGT 1621 CAGAAGAACT CCGGGCCTCC CTCCTGGCCA GGTATCCCCC TGAAAAACTC TTCCAGGCAG 1681 AACGGAACTT CAATGCTGCT CAAGACTTGG ATGTCTCACT TTTGGAAGGT GACCTGGTGG 1741 GTGTGATTAA GAAAAAAGAC CCCATGGGCA GCCAGAACCG CTGGCTGATT GACAATGGAG 1801 TCACCAAAGG CTTCGTGTAC AGCTCTTTCC TAAAGCCCTA CAATCCTCGC CGCAGCCACT 1861 CCGATGCCTC CGTGGGTAGC CACTCCTCCA CAGAGTCTGA GCACGGCAGC TCCTCCCCCA 1921 GGTTCCCACG CCAGAACAGC GGCAGCACCC TGACCTTCAA CCCCAGCAGC ATGGCTGTAT 1981 CCTTTACCTC GGGGTCTTGC CAGAAGCAGC CTCAAGATGC ATCTCCTCCG CCAAAAGAAT 2041 GGGACCAAGG AACTCTCAGT GCATCCCTAA ATCCGAGTAA TTCAGAGAGT AGTCCTTCCA 2101 GATGCCCTTC AGACCCAGAC TCTACCTCCC AGCCAAGGTC AGGGGACTCT GCAGATGTAG 2161 CTAGAGATGT AAAGCAACCC ACTGCCACGC CGAGGAGCTA CCGGAACTTC AGGCATCCAG 2221 AAATAGTTGG CTACTCCGTA CCAGGACGAA ATGGGCAAAG TCAAGACCTC GTCAAAGGAT 2281 GTGCAAGAAC AGCCCAGGCT CCGGAAGACA GAAGTACAGA GCCAGATGGC AGTGAGGCAG 2341 AAGGCAACCA GGTCTATTTT GCTGTCTACA CCTTCAAGGC ACGAAACCCA AATGAGCTGA 2401 GCGTGTCAGC CAATCAGAAA CTCAAGATCC TCGAGTTTAA AGATGTTACA GGAAATACAG 2461 AGTGGTGGTT AGCTGAGGTT AACGGGAAGA AGGGCTACGT TCCCTCCAAT TATATCCGCA 2521 AAACCGAGTA CACCTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 2581 tatcaatttg ttgcaacgaa c