Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11746
- Subject:
- NR_104098.2
- Aligned Length:
- 2379
- Identities:
- 1037
- Gaps:
- 1197
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATCCCTCTGCAGAGCCCGGGGTCACCAGGAGGAGACGCCATGACCCCCACCCTCGCAGCCCTGCTCTGCCTAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGAGTCTGGGCCCCAGGACCCACGTGCAGGCAGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTGATCAGCTGGGGGAGCCCCGTGACCATCTGGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCGACTGGAT 222
Query 1 --------ATGTCGA-------GGCACATATTAAAAA--CACTGGAGTCTGAAAACAAGGTCAAACTCTCCATC 57
|.|.|.| ||.|||.| ||.|| |||||||..|..|.|||||||.||.|.||||||||
Sbjct 223 AAAGAGGGAAGCCCAGAGCCCTGGGACAGA--AATAACCCACTGGAACCCAAGAACAAGGCCAGATTCTCCATC 294
Query 58 CCATCCAT----GATGTGGGAACATGCAGGGCGATATCACTGTTACTATCAGAGCCCTGCAGGCTGGTCAGAGC 127
|||||||| || |.|.|||||.|||.||||.|.|||..|||||.|.|||.||||||||||||||||||
Sbjct 295 CCATCCATAACAGA----GCACCATGCGGGGAGATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGC 364
Query 128 CCAGCGACCCCCTGGAGCTGGTGGTGAC---AGCCTACAGCAGACCCACCCTGTCCGCCCTGCCAAGCCCTGTG 198
|||||||||||||||||||||||.|||| ||||||.||||.|||||||||.||.||||||||.|||||||||
Sbjct 365 CCAGCGACCCCCTGGAGCTGGTGATGACAGGAGCCTATAGCAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTG 438
Query 199 GTAACCTCAGGAGTGAACGTGACCCTCCGGTGTGCCTCACGGCTGGGACTGGGCAGGT-TCAC--------TCT 263
||..|||||||.|.|||..|||||||||..||||.|||||.|..|||| | |||| |||
Sbjct 439 GTGGCCTCAGGGGGGAATATGACCCTCCAATGTGGCTCACAGAAGGGA---------TATCACCATTTTGTTCT 503
Query 264 GATTGAGGAAGGAGACCACAGGCTCTCCTGGACCCTGAACTCACACCAACACAACCATGGAAAGTTCCAGGCCC 337
|||..||||||||||.|||..||||.||.||||||||.|||||||.||.|.|.||..|||...|||||||||||
Sbjct 504 GATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCC 577
Query 338 TGTTCCCCATGGGCCCCCTGACCTTCAGCAACAGGGGTACATTCAGATGCTACGGCTATGAAAACAACACCCCA 411
|||||||..||||||||.||| |||||
Sbjct 578 TGTTCCCTGTGGGCCCCGTGA-----------------------------------------------ACCCC- 603
Query 412 TACGTGTGGTCGGAACCCAGTGACCCCCTGCAGCTACTGGTGTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGAC 485
|.||| |||||||||||||||||||||||||||||||
Sbjct 604 --------------AGCCA------------------------CAGGCGTGTCTAGGAAGCCCTCCCTCCTGAC 639
Query 486 CCTGCAGGGCCCTGTCGTGACCCCCGGAGAGAATCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACATCAGAT 559
||||||||||||||||.||.||||.||..|||..|||||||||||||||||||||||||||||||||..|||||
Sbjct 640 CCTGCAGGGCCCTGTCCTGGCCCCTGGGCAGAGCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACGACAGAT 713
Query 560 ACACTCTGTACAAGGAGGGGG-CCGATGGCCTCCCCCAGCGCCCTGGCCGGCAGCCCCAGGCTGGGCTCTCCCA 632
....||||||.|||||||||| .|| ||.|.|||.||||||||||||||.||||||||||||||||||||||||
Sbjct 714 TTGTTCTGTATAAGGAGGGGGAACG-TGACTTCCTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCA 786
Query 633 GGCCAACTTCACCCTGAGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGCGCACACAACGTCT 706
||||||||||||||||.||||||||||||.||||.||||||||||||||||.|||||.||.|||||||||.|||
Sbjct 787 GGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCCACGGGGGCCAGTACAGGTGCTATGGTGCACACAACCTCT 860
Query 707 CCTCCGAGTGGTCGGCCCCCAGTGACCCCCTGGACATCCTGATCGCAGGACAGATCTCTGACAGACC--CTCCC 778
||||||||||||||||||||||.|||||||||.||||||||||.|||||||||||||.|||| ||| |||||
Sbjct 861 CCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGGACAGATCTATGAC--ACCGTCTCCC 932
Query 779 TCTCAGTGCAGCCGGGCCCCACGGTGACCTCAGGAGAGAAGGTGACCCTGCTGTGTCAGTCATGG-GACCCGAT 851
|.||||..||||||||||||||.|||.|||||||||||||.|||||||||||||||||||||||| | |..
Sbjct 933 TGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGTG----GCA 1002
Query 852 GTT---CACTTTCCTTCTGACCAAGGAGGGGGCAGCCCATCCCCCGTTGCGTCTGAGATCAATGTACGGAGCTC 922
||| ||||||||||||||||||.||.|||||||||||||||||..|||||||||||||||||||||||||||
Sbjct 1003 GTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAGCTC 1076
Query 923 ATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCA 1150
Query 997 CGCAGCTCCAACCCCTACCTGCTGTCTCACCCCAGTGAGCCCCTGGAGCTCGTGGTCTCAGGAGCAACT---GA 1067
..|||||||||||||.|||||||||||..||||||||||||||||||.|||.||||||||||| .||| ||
Sbjct 1151 TACAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGGTCTCAGGA--CACTCTGGA 1222
Query 1068 G-----ACCCTCAATCCAGCACAAAAGAAGTCAGATTCCAAGACTGCCCCACACCTCCAGGATTACACAGTGGA 1136
| |.|||| ||| |.||.|.| |.|....||||...|||||.|||||..|.||||||||||||||||
Sbjct 1223 GGCTCCAGCCTC---CCA-CCCACAGG--GCCGCCCTCCACACCTGCCTCACACGCCAAGGATTACACAGTGGA 1290
Query 1137 GAATCTCATCCGCATGGGTGTGGCTGGCTTGGTCCTGCTGTTCCTCGGGATTCTGTTATTTGAGGCTCAGCACA 1210
||||||||||||||||||..||||.||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1291 GAATCTCATCCGCATGGGCATGGCAGGCTTGGTCCTGGTGTTCCTCGGGATTCTGTTATTTGAGGCTCAGCACA 1364
Query 1211 GCCAGAGAAGCCCCCCAAGGTGCAGCCAGGAGGCAAACAGCAGAAAGGACAATGCACCCTTCAGAGTGGTGGAG 1284
||||||||| .||||||||.|||||||.|||||..||||||.||.|||||||||||||||||||.|||||||||
Sbjct 1365 GCCAGAGAA-ACCCCCAAGATGCAGCCGGGAGGTGAACAGCGGAGAGGACAATGCACCCTTCAGCGTGGTGGAG 1437
Query 1285 CCTTGGGAACAGATC----------------------------------------------------------- 1299
|||..||.|||||||
Sbjct 1438 CCTCAGGGACAGATCTGATGATCCCAGAAGGCTCTGGAGGACAATCTAGGACCTCCAGAGGGGGGTGAGATTTC 1511
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1512 AGGCCACACACTGTGGAAGCTTGTATGGCAGTCTCCCACCCTCATGTGTTCAATCTGATGATCCCAGGAGGTTC 1585
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1586 TGGAACAAAATCTACAGCCTATGCTTTCTGGACTATCTGTCGATCATTCCTGAAGAGAGGGATCAATGTTGAGA 1659
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1660 CGGGGTTTCACCATGTTGCTCTGGCTGGTCTCGAACTCCTGACCTAAGGTGATCCACCAGCGTCGGCTTTCCAT 1733
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1734 AGTGCTGGGATTACAGGTGTGAGCCACTATGCCTGGCCAACTTTTATAATTTCTGTGCTGGGAACATTCCAAAT 1807
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1808 CTTCATTTCTCACTCATGTGGAAAATACAATAATCTGTTGCTAACTATGGTCACCCTACTGAGCTCTCAGGCCC 1881
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1882 TGGAACTTACTCCTTCTCTCCACCTGTATTTCTGCACCCGTCCACCAACCTCTCTCCATCCCTGTCCTCCACAC 1955
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 1956 TCCCTTGCCAGCCTCTGTTGACAACCATTCTACTCTCTGCCATCACAAGGCCCACTTTTGTAGCTTCCGCGTGA 2029
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2030 GTGAGAACATGCTCCTCTTTCTGGGCCTGGCTTATTTCACTGAACATAATGTCTTCCAGATTCATCTGTGTTGC 2103
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2104 TGAACATGGTACAATTTCCTTCTTTTTATGCCTGAATATTATTTCATTGTGTATATAGACCACATGTTCCTTAT 2177
Query 1300 -------------------------------------------------------------------------- 1299
Sbjct 2178 CCATTCATCCATTGATGGACATAGGTTGATTCCATATCTTGGCTATTGTGAATACTGCTGCAATAAACATGGCA 2251
Query 1300 ----------- 1299
Sbjct 2252 ATGCAGACACC 2262
