Construct: ORF ccsbBroadEn_11746
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011611.1_s300c1, BRDN0000387879
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LILRA4 (23547)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23547 | LILRA4 | leukocyte immunoglobulin li... | NM_012276.5 | 86.5% | 86.7% | (many diffs) |
| 2 | human | 79168 | LILRA6 | leukocyte immunoglobulin li... | XM_011547130.2 | 67.2% | 58.9% | (many diffs) |
| 3 | human | 79168 | LILRA6 | leukocyte immunoglobulin li... | NR_104098.2 | 43.5% | (many diffs) | |
| 4 | human | 79168 | LILRA6 | leukocyte immunoglobulin li... | XR_001756516.1 | 36.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1368
- ORF length:
- 1299
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCGAGGCAC ATATTAAAAA CACTGGAGTC TGAAAACAAG GTCAAACTCT 121 CCATCCCATC CATGATGTGG GAACATGCAG GGCGATATCA CTGTTACTAT CAGAGCCCTG 181 CAGGCTGGTC AGAGCCCAGC GACCCCCTGG AGCTGGTGGT GACAGCCTAC AGCAGACCCA 241 CCCTGTCCGC CCTGCCAAGC CCTGTGGTAA CCTCAGGAGT GAACGTGACC CTCCGGTGTG 301 CCTCACGGCT GGGACTGGGC AGGTTCACTC TGATTGAGGA AGGAGACCAC AGGCTCTCCT 361 GGACCCTGAA CTCACACCAA CACAACCATG GAAAGTTCCA GGCCCTGTTC CCCATGGGCC 421 CCCTGACCTT CAGCAACAGG GGTACATTCA GATGCTACGG CTATGAAAAC AACACCCCAT 481 ACGTGTGGTC GGAACCCAGT GACCCCCTGC AGCTACTGGT GTCAGGCGTG TCTAGGAAGC 541 CCTCCCTCCT GACCCTGCAG GGCCCTGTCG TGACCCCCGG AGAGAATCTG ACCCTCCAGT 601 GTGGCTCTGA TGTCGGCTAC ATCAGATACA CTCTGTACAA GGAGGGGGCC GATGGCCTCC 661 CCCAGCGCCC TGGCCGGCAG CCCCAGGCTG GGCTCTCCCA GGCCAACTTC ACCCTGAGCC 721 CTGTGAGCCG CTCCTACGGG GGCCAGTACA GATGCTACGG CGCACACAAC GTCTCCTCCG 781 AGTGGTCGGC CCCCAGTGAC CCCCTGGACA TCCTGATCGC AGGACAGATC TCTGACAGAC 841 CCTCCCTCTC AGTGCAGCCG GGCCCCACGG TGACCTCAGG AGAGAAGGTG ACCCTGCTGT 901 GTCAGTCATG GGACCCGATG TTCACTTTCC TTCTGACCAA GGAGGGGGCA GCCCATCCCC 961 CGTTGCGTCT GAGATCAATG TACGGAGCTC ATAAGTACCA GGCTGAATTC CCCATGAGTC 1021 CTGTGACCTC AGCCCACGCG GGGACCTACA GGTGCTACGG CTCACGCAGC TCCAACCCCT 1081 ACCTGCTGTC TCACCCCAGT GAGCCCCTGG AGCTCGTGGT CTCAGGAGCA ACTGAGACCC 1141 TCAATCCAGC ACAAAAGAAG TCAGATTCCA AGACTGCCCC ACACCTCCAG GATTACACAG 1201 TGGAGAATCT CATCCGCATG GGTGTGGCTG GCTTGGTCCT GCTGTTCCTC GGGATTCTGT 1261 TATTTGAGGC TCAGCACAGC CAGAGAAGCC CCCCAAGGTG CAGCCAGGAG GCAAACAGCA 1321 GAAAGGACAA TGCACCCTTC AGAGTGGTGG AGCCTTGGGA ACAGATCTTG CCAACTTTCT 1381 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac