Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11765
- Subject:
- NR_104292.1
- Aligned Length:
- 4290
- Identities:
- 1245
- Gaps:
- 3020
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AATATTATTGTTTGAGTGTTTGAATGATAAACTTTGGAATTTACTGCATCCAGTTAGAAAAGTTTACTTTTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTGTGGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTCGAGGTGGACAGATCACCTGAGGTCAGGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGAGACCAGCCTCACCAACATGGAGAAACCTAGTCTCTACTAAAAATACAAAATTAGCTGGGCATGGTGGCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CATGCCTGTAATCCTGGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGTGGAGGTTGCAGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGCCGAGATCGTTCCATTGCACTCCATCCTGGGCAATAAGAGCGAAACTCTGTCTCAAAAAAAAAAAGGAAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTACTTTTAAGAGTGATCTGGGGGTTAGCAGCGTGAGTTACTGACAGCTCAGACAGTGGCTTTGAGAATGAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGAGTCATCAAAGGTGGCCGGAGACCCTATTCGACTCCACAGGACCGTGCTTGATTCGAGAACAGTAAGACCTT 518
Query 1 ----------------------------------------------------ATGGC-----CAGCGACGGGGC 17
|.||| |||.|| |.|
Sbjct 519 TCAACAAAACCAGTGTCAGGGTCCAAGATTGGAGGCGTTGGGAGTCGGGGCAAGGGCAGAAGCAGGGA---GAC 589
Query 18 CAGGAAGCAA--------------------------------------TT--------CTGGAAGC-------G 38
|||||.||.| || .||||||| |
Sbjct 590 CAGGAGGCCAGGGTGCCGCAGCGTCCAGTGGTCACTGGTGGTGGCGGCTTGCACCTGAGTGGAAGCTGTGGTGG 663
Query 39 CAGCAA----------CAGCA--------------AGCTCCC---------------------GGGCAGTTTGC 67
..|||| ||||| |||.||| .||||.|||||
Sbjct 664 TGGCAAGAAATGCATCCAGCACGTGTATGGTGCCCAGCACCCCCCCTTTGATCCACTGTTACATGGCACTTTGC 737
Query 68 TCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGC 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TCAGGTCCACGGCCAAGATGCCGACCACACCAGTGAAGGCCAAGAGGGTCAGCACCTTCCAGGAGTTTGAGAGC 811
Query 142 AATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAACTC 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AATACCAGCGATGCCTGGGACGCTGGGGAGGACGACGATGAGCTCCTGGCCATGGCGGCGGAGAGCCTGAACTC 885
Query 216 CGAGGTGGTCATGGAGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCAGG 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 CGAGGTGGTCATGGAGACGGCCAACCGTGTGCTGCGTAACCACAGCCAGCGGCAGGGGCGGCCCACGCTGCAGG 959
Query 290 AGGGGCCAGGGCTTCAGCAGAAGCCCAGGCCCGAGGCAGAGCCGCCCTCACCCCCCAGCGGCGACCTCCGGCTG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGGGGCCAGGGCTTCAGCAGAAGCCCAGGCCCGAGGCAGAGCCGCCCTCACCCCCCAGCGGCGACCTCCGGCTG 1033
Query 364 GTGAAGTCGGTCAGTGAGAGCCACACGTCCTGTCCTGCA----------------------------------- 402
|||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GTGAAGTCGGTCAGTGAGAGCCACACGTCCTGTCCTGCAGAAAGTGCCAGCGATGCCGCCCCTCTGCAGAGGTC 1107
Query 403 -------------------------------------------------------------------------- 402
Sbjct 1108 CCAGTCTCTCCCACACTCGGCCACCGTCACGCTGGGTGGCACATCTGACCCCAGCACTCTCAGCAGCTCAGCGC 1181
Query 403 --------------------------------------------------------------------GAGGAA 408
||||||
Sbjct 1182 TGAGCGAAAGAGAGGCCTCCCGGCTCGACAAGTTCAAGCAGCTGCTTGCCGGCCCCAACACGGACCTTGAGGAA 1255
Query 409 TTACGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCAGGTTACCT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TTACGGAGGTTGAGCTGGTCCGGAATCCCTAAGCCAGTGCGTCCAATGACGTGGAAGCTCCTCTCAGGTTACCT 1329
Query 483 TCCCGCCAATGTAGACCGGAGACCAGCCACTCTCCAGAGAAAACAAAAAGAATATTTTGCATTTATTGAGCACT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TCCCGCCAATGTAGACCGGAGACCAGCCACTCTCCAGAGAAAACAAAAAGAATATTTTGCATTTATTGAGCACT 1403
Query 557 ATTACGATTCTAGGAACGACGAAGTTCACCAGGACACATACAGGCAGATCCACATAGACATCCCTCGCATGAGC 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 ATTACGATTCTAGGAACGACGAAGTTCACCAGGACACATACAGGCAGATCCACATAGACATCCCTCGCATGAGC 1477
Query 631 CCTGAAGCGTTGATCCTGCAGCCCAAGGTGACGGAGATTTTTGAAAGGATCTTGTTCATATGGGCGATCCGCCA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CCTGAAGCGTTGATCCTGCAGCCCAAGGTGACGGAGATTTTTGAAAGGATCTTGTTCATATGGGCGATCCGCCA 1551
Query 705 CCCAGCCAGTGGATACGTTCAGGGTATAAATGATCTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATACA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 CCCAGCCAGTGGATACGTTCAGGGTATAAATGATCTCGTCACTCCTTTCTTTGTGGTCTTCATTTGTGAATACA 1625
Query 779 TAGAGGCAGAGGAGGTGGACACGGTGGACGTCTCCGGCGT-------GCCCGCAGA--------GGTGCTGTGC 837
||| |.|.|||.| || |.||.|||| ..|||||||
Sbjct 1626 TAG-------------------------CCTTTCCAG-GTTGTGGTCGGCCTCAGATTCCCATCCTTGCTGTG- 1672
Query 838 AACATC--GAG------GCC---------GACACCTACTGGTGCATGAGC-------------AAGCTGCTGGA 881
||| ||| ||| |||| .||||.| |||.| ||
Sbjct 1673 ---ATCTGGAGAGATGAGCCTTACCCGAGGACA----------GATGAACAGATTATCCTCAGAAGAT----GA 1729
Query 882 TGGC--ATTCAGGACAACTACACCTTTGCCCAACCTGGGATTCAAATGAAAGTGAAAATGTTAGAAGAACTCGT 953
.|.| ||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GGACATATCCAAGACAACTACACCTTTGCCCAACCTGGGATTCAAATGAAAGTGAAAATGTTAGAAGAACTCGT 1803
Query 954 GAGCCGGATTGATGAGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAGTTTGCCTTCCGCT 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GAGCCGGATTGATGAGCAAGTGCACCGGCACCTGGACCAACACGAAGTGAGATACCTGCAGTTTGCCTTCCGCT 1877
Query 1028 GGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACACCTACCAGTCTGAA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 GGATGAACAACCTGCTGATGAGGGAGGTGCCCCTGCGTTGTACCATCCGCCTGTGGGACACCTACCAGTCTGAA 1951
Query 1102 CCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTTCTCGTGAGATGGAGGAAGGAAATACTAGA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 CCGGACGGCTTTTCTCATTTCCACTTGTACGTGTGCGCTGCTTTTCTCGTGAGATGGAGGAAGGAAATACTAGA 2025
Query 1176 AGAAAAAGATTTTCAAGAGCTGCTGCTCTTCCTCCAGAACCTGCCCACAGCCCACTGGGATGATGAGGACATCA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 AGAAAAAGATTTTCAAGAGCTGCTGCTCTTCCTCCAGAACCTGCCCACAGCCCACTGGGATGATGAGGACATCA 2099
Query 1250 GCCTGTTGCTGGCCGAGGCCTACCGCCTCAAGTTTGCTTTTGCCGACGCCCCCAATCACTACAAGAAA------ 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 GCCTGTTGCTGGCCGAGGCCTACCGCCTCAAGTTTGCTTTTGCCGACGCCCCCAATCACTACAAGAAATGAGCC 2173
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2174 CAGGCCCACCCGCAGCTGGCCTCACTGTCCCGGGTGGCGCGCCCCACCTGCCTGGCTGGTGGTAGGCCCCTGTG 2247
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2248 AGCTGGTCCCGGGCTGCTAAAAGGCCTTGTGAGGTGGCCCCACCCTCCAGGGGAGCTGGTGAAGATGGGCCACA 2321
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2322 GACCTGGTCTAGGGCTGACAAAGACAGGGACAGCCTTTGTTTTCTGAGATACCAAAGAGAGCCAGGGGAGGGCC 2395
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2396 CCGGGTTCGGCGGCCAGAGGCAGGTCAGGGGTCCCCTCTCCCTCTCCCTGCAATGTCCTTGCCAAATGACTGCC 2469
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2470 TCCTGCTGCCCCTAGTCCGGGGCAGCCTAGGAGGCCGACCCTCTTTGGAGTCCTGCTGTCTGGGTGCCAGGGCC 2543
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2544 GGAACGAGGTAGTGGCCATCTCATACCTACTCTGAAATGCAAAACTTCTATTCTGTTGAGTGAAAGAATAAAAT 2617
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2618 GTAGACAAAATCTAGACCGAGACGTTGCGCTGACCCGGGGTCTCTGTGCCGCGAGGTCCCCTCACAGCTGTATT 2691
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2692 TCACTGCTGCTGGCCCTTTCCCTCCGTGTGTTTTCCTGCTTGCTTGGTTTAAACGTGGCTGGGAAGCTGAAGGC 2765
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2766 TGGAGTCCAAGCCGTGAGCCCGCCGAGTGCCTGGGAGGCCGTGGGACCAAAGGCTGGGAGCAGAGGGAGGCCTC 2839
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2840 GCCATCGCCTTACTTTCCACCTTGAACCTCTTTTACAAGAGAGAAACCCCCACCTCCCTGAGGTCCAGGGCCAA 2913
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2914 GTGGCCCCGCCACGCAGGTAGGCGCCGGCCTCAGCCAGAGCCCCTGGAGGCCCACCCAGGCTGTCGGGCCATGT 2987
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 2988 TGGGCTGGCAGACGGGCAGGGGGTCGCGTCCCTGTCATCAAAGCCCTGAACCACAGTGCTCTTCTCACCGCAGC 3061
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3062 CTGGAAGCGGAATGAGCTTTTGGAGACTTCCTGGGACTTGCTGTCCTTGTCCAGGTCTGCCAGGTGTAGGGGAG 3135
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3136 GTGTGACTGGTTCCATCATGGACCGGTTCCTCCATGGACCGGTTCCTCCGTGGACCGGTTCCGCCATGGACCGG 3209
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3210 TTCCGCCATGGACCACTCCTGCCCTGGACCACTCCTGCCCTGGACCGGTTCTGCCGTGGACTGGTTCCCGCCGT 3283
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3284 GGACCAGTTCCCGCTGTATACTGGTTCTGCCCTGGACTGGTTCCCGCTGTGGACTGGTTCCTTGGGGCTCTAAG 3357
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3358 TGCGGAAGGGCCCAGAGCTGGTCCCTGCCCAGCGCCCTGCTAGGGCTGTGTCCTTGGCTCCAGGGGCCTTGGGA 3431
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3432 CTGGCTTCCCAGCGTTCCCTCGGTGTGTCACAGGCTGCATGACCCCTGGAATGCGGGCAGGGCCACAGCCACAG 3505
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3506 TCTGTCTGATCCCTGAGCCCAGGACAGGCTCACGTCCTCAGCGACCCACTGGTGACTGACTTCCCAGACTCTCC 3579
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3580 TCTGTCCCTCAGGAGCAGCCGTGTCCTCTCCCAGGCCCTAGGACACTGCCAGAGACTGTGGGACATACAGGCAT 3653
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3654 AAGTGATGTGTGTGTTTCTGCTTCTGTTTTAAAAATCCAGGGTCATTACACACAGCATGGAAATTAGCACAAAA 3727
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3728 TGCTGTGCAAACGTCAGATGCTCCCAAACCAGCAAAGGGATGGGCTTGCTTCACATCAGATGCGGGCACGCCTT 3801
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3802 ACCCCTGCCTTCCGTGTCCCCACCCCAGGGTCAAGGGTTCCTCAGACCAGCCATGCCTCCTCCTCCTGCCGCCT 3875
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3876 CCTTTTCTAGATGGGGAGGGGATTCCGTCACAAGAAGAGCCGCCCCTCGGCCGTGTGCAGGAAGCCCCATGTCG 3949
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 3950 CTTTGCCGAGATCAGCCCTGGGAGGATCCCCTTCTCCAGCTCAGATCATGCCGTGTGGCCAGAAGGCTGCGGAC 4023
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4024 ACAACTGACCTGCTTCTCGAGGTGGTTGATGTTTTAAACAGGAAGCTCCACGGAGTTCAGCCCTGTGTGCATTT 4097
Query 1318 -------------------------------------------------------------------------- 1317
Sbjct 4098 CCTCATGTATGTAAACGCCAAGACTGAATGTGAGAGGTGTTGGCCGCGGGCCTTAAGTCTGAGCAGATCCATCT 4171
Query 1318 ------------------------------------------------------------------------ 1317
Sbjct 4172 GGAATGTTCGGGGTGTGCTGTCTGGATGTGGTGCGCTAAAAACACGGAATAAAGATCAGTGACAAAGCCGCG 4243
