Construct: ORF ccsbBroadEn_11765

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007765.1_s300c1, BRDN0000385282
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D22A (25771)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25771 TBC1D22A TBC1 domain family member 22A NM_001284303.1 100% 100%
2 human 25771 TBC1D22A TBC1 domain family member 22A XM_017028745.2 95.8% 95.8% 63_119del
3 human 25771 TBC1D22A TBC1 domain family member 22A NM_001284304.1 85.2% 84.5% (many diffs)
4 human 25771 TBC1D22A TBC1 domain family member 22A NM_014346.5 84.9% 84.9% 63_119del;460_636del
5 human 25771 TBC1D22A TBC1 domain family member 22A NM_001284305.1 82.5% 82.5% 0_1ins84;319_495del
6 human 25771 TBC1D22A TBC1 domain family member 22A XM_017028744.1 82.5% 82.5% 0_1ins84;319_495del
7 human 25771 TBC1D22A TBC1 domain family member 22A XM_017028742.2 79.9% 79.9% 63_119del;460_636del;1126_1221del
8 human 25771 TBC1D22A TBC1 domain family member 22A XM_024452198.1 79.2% 76.9% (many diffs)
9 human 25771 TBC1D22A TBC1 domain family member 22A XM_017028743.2 77.9% 72.2% (many diffs)
10 human 25771 TBC1D22A TBC1 domain family member 22A XM_011530099.2 77.1% 77.5% (many diffs)
11 human 25771 TBC1D22A TBC1 domain family member 22A XM_011530100.3 62.3% 62.2% 63_119del;460_636del;1202_1203delTCins350
12 human 25771 TBC1D22A TBC1 domain family member 22A XM_017028746.2 59.5% 58% (many diffs)
13 human 25771 TBC1D22A TBC1 domain family member 22A XM_011530101.3 57.5% 57.4% 63_119del;460_636del;1128_1128delAins424
14 human 25771 TBC1D22A TBC1 domain family member 22A XM_011530102.3 54.9% 50% (many diffs)
15 human 25771 TBC1D22A TBC1 domain family member 22A XM_005261496.2 54.3% 51.4% (many diffs)
16 human 25771 TBC1D22A TBC1 domain family member 22A XM_017028747.2 53% 51.6% (many diffs)
17 human 25771 TBC1D22A TBC1 domain family member 22A XR_002958682.1 34.9% (many diffs)
18 human 25771 TBC1D22A TBC1 domain family member 22A XR_001755206.2 34.8% (many diffs)
19 human 25771 TBC1D22A TBC1 domain family member 22A XR_001755203.2 33.6% (many diffs)
20 human 25771 TBC1D22A TBC1 domain family member 22A XR_001755202.2 33.2% (many diffs)
21 human 25771 TBC1D22A TBC1 domain family member 22A XR_001755204.1 33.2% (many diffs)
22 human 25771 TBC1D22A TBC1 domain family member 22A XR_001755205.1 32.1% (many diffs)
23 human 25771 TBC1D22A TBC1 domain family member 22A NR_104292.1 29% (many diffs)
24 mouse 223754 Tbc1d22a TBC1 domain family, member 22a NM_145476.2 73.4% 76.9% (many diffs)
25 mouse 223754 Tbc1d22a TBC1 domain family, member 22a XM_006520833.2 68% 71.3% (many diffs)
26 mouse 223754 Tbc1d22a TBC1 domain family, member 22a XM_017316576.1 57.6% 61.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1383
ORF length:
1317
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGCGACGGG GCCAGGAAGC AATTCTGGAA GCGCAGCAAC AGCAAGCTCC
121CGGGCAGTTT GCTCAGGTCC ACGGCCAAGA TGCCGACCAC ACCAGTGAAG GCCAAGAGGG
181TCAGCACCTT CCAGGAGTTT GAGAGCAATA CCAGCGATGC CTGGGACGCT GGGGAGGACG
241ACGATGAGCT CCTGGCCATG GCGGCGGAGA GCCTGAACTC CGAGGTGGTC ATGGAGACGG
301CCAACCGTGT GCTGCGTAAC CACAGCCAGC GGCAGGGGCG GCCCACGCTG CAGGAGGGGC
361CAGGGCTTCA GCAGAAGCCC AGGCCCGAGG CAGAGCCGCC CTCACCCCCC AGCGGCGACC
421TCCGGCTGGT GAAGTCGGTC AGTGAGAGCC ACACGTCCTG TCCTGCAGAG GAATTACGGA
481GGTTGAGCTG GTCCGGAATC CCTAAGCCAG TGCGTCCAAT GACGTGGAAG CTCCTCTCAG
541GTTACCTTCC CGCCAATGTA GACCGGAGAC CAGCCACTCT CCAGAGAAAA CAAAAAGAAT
601ATTTTGCATT TATTGAGCAC TATTACGATT CTAGGAACGA CGAAGTTCAC CAGGACACAT
661ACAGGCAGAT CCACATAGAC ATCCCTCGCA TGAGCCCTGA AGCGTTGATC CTGCAGCCCA
721AGGTGACGGA GATTTTTGAA AGGATCTTGT TCATATGGGC GATCCGCCAC CCAGCCAGTG
781GATACGTTCA GGGTATAAAT GATCTCGTCA CTCCTTTCTT TGTGGTCTTC ATTTGTGAAT
841ACATAGAGGC AGAGGAGGTG GACACGGTGG ACGTCTCCGG CGTGCCCGCA GAGGTGCTGT
901GCAACATCGA GGCCGACACC TACTGGTGCA TGAGCAAGCT GCTGGATGGC ATTCAGGACA
961ACTACACCTT TGCCCAACCT GGGATTCAAA TGAAAGTGAA AATGTTAGAA GAACTCGTGA
1021GCCGGATTGA TGAGCAAGTG CACCGGCACC TGGACCAACA CGAAGTGAGA TACCTGCAGT
1081TTGCCTTCCG CTGGATGAAC AACCTGCTGA TGAGGGAGGT GCCCCTGCGT TGTACCATCC
1141GCCTGTGGGA CACCTACCAG TCTGAACCGG ACGGCTTTTC TCATTTCCAC TTGTACGTGT
1201GCGCTGCTTT TCTCGTGAGA TGGAGGAAGG AAATACTAGA AGAAAAAGAT TTTCAAGAGC
1261TGCTGCTCTT CCTCCAGAAC CTGCCCACAG CCCACTGGGA TGATGAGGAC ATCAGCCTGT
1321TGCTGGCCGA GGCCTACCGC CTCAAGTTTG CTTTTGCCGA CGCCCCCAAT CACTACAAGA
1381AATGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1441gcaacgaac

Download FASTA (ORF) (Full)

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