Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11858
Subject:
XM_006538738.3
Aligned Length:
4788
Identities:
1074
Gaps:
3597

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGTGTGAAGCCCCAGGGCCTGGTGGTGACTTCCAGTGCCGTGTGCAGCTCTCCTGACTACCTCCGAGAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAAGTACTACCCCGGCGGCCCCCCAACCCCCCGGCCCTTGCTTCCCACCCGGCCCCCTGCCAGCCCACCTGACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGCCTTTTCCACCCATACCTTCTCTGAGAACCCACGCCCACCCCCTCGGCGGGACCCCAGCTCCCGCCGTCCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCAGTCCTTGCCAAGGGAGACGACCTGCTACCTCCTCGGGCAGCCCGGCCTGTCTCCCAGGCCCATTGTCCCTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCGGCTCCAGACAACAGCTCCCTCCGCCACTGGGACAACGGGCGTGTGAACCTGCGTCCAGTAGTGCAGCTGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGACATCATGAAGGACTTGACAAGGCTGTCGCAGGACCTGCAGCACAGCGGTGTGCATCTGGACTGTGGAGGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTTCGGCTGAGCCGCCCACCCGCTCCGCCACCCGGCGACTTGCAGTACAGCTTCTTCTCTTCGCCCAGCCTGGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAACAGCATCCGCAGCCCCGAGGAGCGTGCTAACCCTCACACCAAGTCAGAGCGGCCCAGCCACCCTCTCTATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AACCTGAGCCCGAGCCCAGGGATAGTCCCCAGCCTGGCCAAGGCCATGGTCCTGGAGCCGCGGCCACAGCCACT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGTCTGCCCCCCGAGCCCGAGCCAGATGGGCCTGATTACTCTGAGCTGGCAGATGCCGACATCCTCAGTGAACT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGCCTCCCTCACTTGCCCTGAGGCCCAGCTCCTGGAGGCTCAAGCCCTTGAGCCGCCTTCACCACAGCCTGAGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGCAGCTTCTGGACCCCCAGCCCCGCTTCCTAGATCCACAGGCACTAGAGCCTCTAGGAGAAGGTTTGGAGCTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCACCCCTGCAGCCCCTTGCTGATCCCCTGGGGCTGCCGAGCCTGACCCTGCAGGCCCTAGATACCCTACCTGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTCCTTGGAATCCCAGCTCCTTGACCCTCAGGCCCTGGACCCCCTGCCCAAGTTGCTGGATGTCCCCGGTCGAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GTCTAGAGCCCCAGCAATCCTTGGGCCACTGCCAACTGGCTGAGCCCTTACGCCTGGACTTGTGCTCACCTCAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGTCCCCCTGGGCCTGAGGGCCACCCCAAGTACGCCTTGAGGCGCACTGATAGGCCAAAGATCCTGTGTCGCAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCGGAAAGCCGGAAGGGGCCGGAAGGCGGACTCAGGACCTGAGGGTCGCCTGCTTCCTCTTCCCATGCCTACAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGCTGGCAGCTGCCCTGGCCGAGCCCCCACCGCTGCCACCGCCACCACCTCCTACTCTGTCAGGCCCAGGCCCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTTCCCGAGCTGGAGCCAGAGTCTTCTCAAACCCCGATGGTCCCCACCCGCAAAGGCAAGTGCAGGGGTGTGCG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GCGCATGGTGGTGAAGATGGCCAAGATCCCCGTGTCACTGGGGCGGAGGAACAAGACCACGTACAAAGTTTCAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCTTGAGCAGCAGTCTGAGTGTGGAGGGCAAGGAGCTGGGCTTGAGGGTGTCGTCAGAGCCCACCCCACTGCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAGATGAAGAACAACGGGCGGAATGTGGTGGTCGTCTTCCCGCCAGGTGAGATGCCCATCATTCTCAAGCGCAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GCGTGGCCGCCCTCCCAAGAACCTGCTGCTGGGTCCCGGGAAGCCCAAAGAGCCGACAGTGGTAGCTGCTGAGG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTGCTACTGTGACAGCGGCCACCATGGCCATGCCTGAGGTGAAGAAACGCCGGCGACGGAAACAGAAGCTGGCG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCTCCGCAGCCATCGTATGCAGCAGACGCCAATGACAGTAAGGCTGAATATTCTGATGTCCTCGCCAAGCTGGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTTTTTGAACCGCCAGAGTCAGTGTGCTGGGAGGTGCTCGCCACCCCGCTGCTGGACACCCAGTGAGCCTGAGT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCGTGCACCAGGCCCCGGACACTCAGAGCATCTCTCAGTTCCTGCATCGTGTGCAGGGCTTCCGGAGGCGTGGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GGCAAAACAGGAGGCTTTGGAGGTAGGGGTGGAGGCCACGCAGCCAAGGCAGCCCGCTGTTCCTTTAGTGACTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTTTGAGGGCATTGGCAAGAAAAAGAAGGTGGTAGCAGTGGCAGCTCCTGGGCTTGTGGGTCCTGGTCTCACCG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AGTTGGGGCATCCACGCAAAAGGGGCCGAGGGGAGGTAGATGCTGTAACTGGGAAACCCAAGCGCAAGAGGCGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCCCGAAAGAATGGGACTCTGTTCCCAGAGCAGGTGCCCAGTGGCCCAGGCTTTGGGGAGGCAGGTGCTGAGTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GGTCGGAGACAAGGGTGGTGGCTGGGCCCCTCACCATGGGCACCCAGGAGGGCAAGCTGGCAGAAACTGTGGTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TCCAGGGGACCGAGGCCAGGGCTTTTGCCTCCACTGGGCTGGAGAGTGGGGCTTCAGGCCGTGGCAGCTACTAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCTGGTGCGCCCTCAGGCCAGACGGAGCTCAGCCAGGAGCGCCAGAACCTCTTCACTGGCTATTTTCGGTCCCT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCTTGATTCAGATGACTCCTCTGACCTCTTGGACTTTGCCCTGTCGGCCTCTCGCCCAGAGTCCCGGAAGGCAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CAGGAACCTATGCAGGGCCTCCCTCCAGTGCACTGCCTGCTCAGCGGGGCCTTGCCACTTTCCCAAGCCGGGGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GCCAAGGCTAGCCCGGTGGCAGTGGGCAGCAGTGGAGCTGGGGCAGACCCCTCCTTTCAGCCTGTCCTGCCTTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CCGTCAGACCTTTCCACCAGGGCGGGCAACAAGCTATGGGATAACCCCAGCCACTTCAGACTGCCGGGCAGCTG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AGACCTTCCCAAAGCTGGCTCCCCCACCTTCAGCCGTGGCCCGCTCACCTACAACCCATCCGCCCGCCAACACC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TACCCACCTCAGTATGGTGGCTATGGGGCCGGGCAAAGCGTGTTTGCCTCGGCAAAGCCCTTTTCAGGCCAGGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CTGTGCAAACAGCAAGGACTGCAGCTTCGCCTATGGCAGCGGCAATAGCCTCCCTGCCTCACCCAGCAGTGCCC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  ACAGTGCTGGCTACGCCCCGCCACCTACTGGGGGTCCCTGCCTACCGCCCAGCAAGGCTTCCTTCTTCAACAGC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCTGAGGGGGGCCCCTTCTCTGGGTCAGCTCCCACACCCTTGCGCTGTGACAGTCGAGCCAGTACCGTCTCACC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CGGTGGCTACATGGTGCCCAAGGGCACCACGGCTTCTGCGGCCTCTGTGGCCTCCTCCTCTTCCTCTTCCTTTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AGCCCTCACCTGAGAACTGTCGGCAGTTTGTGGGGGCTTCTCAGTGGCCTTTCCGGCAGGGGTATGGAGGCCTG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GACTGGGCCTCAGAGGCCTTTAGTCAGCTCTACAATCCCAATTTTGACTGCCATGGCAGCGAACCCAATGTGAT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CTTGGACATCTCGAACTACACGCCGCAGAAGGTAAAGCAGCAGACAGCCGTGTCCGAGACCTTCTCCGAGTCAT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CCTCTGACAGCACCCAGTTCAGTCAGCCAGTCGGTGGTGGTGGCTTCAGGCGTGCCAACAGCGAGGCCTCAAGC  3552

Query    1  ---------------------------------------ATGATGGACTGGAACGAGGCATCATCTGCCCCCGG  35
                                                   |||||||||||||||||.||.||.|||||.|||||
Sbjct 3553  AGTGAGGGCCAGTCTAGCCTGTCGAGCCTGGAGAAGCTCATGATGGACTGGAACGAAGCTTCGTCTGCTCCCGG  3626

Query   36  CTACAACTGGAACCAGAGTGTCCTCTTTCAGAGTAGCTCCAAGCCGGGCCGTGGACGGCGGAAGAAGGTGGACC  109
            |||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||||||||||
Sbjct 3627  CTACAACTGGAACCAGAGTGTCCTCTTTCAGAGTAGCTCAAAGCCCGGCCGTGGACGACGGAAGAAGGTGGACC  3700

Query  110  TGTTCGAGGCCTCACATCTGGGCTTCCCGACATCCGCCTCTGCCGCTGCCTCAGGCTACCCATCCAAACGGAGC  183
            ||||.||||||||.|||||||||||..|.||||||.||||.|||.|||||||.||||||||.||||||||||||
Sbjct 3701  TGTTTGAGGCCTCCCATCTGGGCTTTTCAACATCCACCTCGGCCACTGCCTCTGGCTACCCGTCCAAACGGAGC  3774

Query  184  ACTGGGCCCCGGCAGCCGCGAGGTGGACGGGGCGGTGGGGCCTGCTCAGCCAAGAAGGAGCGGGGTGGCGCAGC  257
            ||.||||||||||||||.||.|||||.|||||..|||||||||||||.||||||||||||.|.|||||..||||
Sbjct 3775  ACCGGGCCCCGGCAGCCTCGGGGTGGCCGGGGTAGTGGGGCCTGCTCGGCCAAGAAGGAGAGAGGTGGTACAGC  3848

Query  258  GGCCAAAGCCAAGTTCATCCCCAAGCCACAGCCAGTCAACCCACTGTTCCAGGACAGTCCTGACCTCGGCCTGG  331
            ||||||||||||||||||||||||||||||.||.||.|||||.||||||||||||||.||.|||||.|||||||
Sbjct 3849  GGCCAAAGCCAAGTTCATCCCCAAGCCACAACCGGTGAACCCCCTGTTCCAGGACAGCCCAGACCTTGGCCTGG  3922

Query  332  ACTACTATAGCGGGGACAGCAGCATGTCACCACTGCCCTCACAGTCGAGGGCCTTCGGCGTGGGAGAGCGAGAC  405
            |||||||.||.||.||||||||||||||||||||||||||.||||||||.|||||.||.||||||||.||.||.
Sbjct 3923  ACTACTACAGTGGAGACAGCAGCATGTCACCACTGCCCTCCCAGTCGAGAGCCTTTGGTGTGGGAGAACGCGAT  3996

Query  406  CCCTGTGACTTCATAGGACCCTACTCCATGAACCCGTCCACGCCTTCCGATGGCACCTTTGGCCAAGGCTTCCA  479
            ||||||||||||||.|||||||||||||||||.||.|||||.|||||.||||||||.|||||||||||||||||
Sbjct 3997  CCCTGTGACTTCATGGGACCCTACTCCATGAATCCATCCACACCTTCTGATGGCACTTTTGGCCAAGGCTTCCA  4070

Query  480  CTGCGACTCGCCCAGCCTGGGTGCTCCCGAGCTTGATGGCAAGCATTTCCCACCGCTGGCCCACCCACCCACGG  553
            |||.|||||.|||||||||||||||.|.||||||||||||||||||||||||||.|||||||||||.|||||.|
Sbjct 4071  CTGTGACTCTCCCAGCCTGGGTGCTGCGGAGCTTGATGGCAAGCATTTCCCACCACTGGCCCACCCGCCCACAG  4144

Query  554  TGTTTGACGCCGGCCTGCAGAAGGCATACTCGCCCACCTGCTCGCCTACACTGGGCTTCAAGGAAGAGCTGCGG  627
            ||||.||.||.||||||||||||||.|||||.||||||||.||.||.||.||.|||||||||||||||.|||||
Sbjct 4145  TGTTCGATGCTGGCCTGCAGAAGGCCTACTCACCCACCTGTTCACCAACGCTAGGCTTCAAGGAAGAGTTGCGG  4218

Query  628  CCACCGCCCACAAAGCTGGCTGCCTGCGAGCCCCTCAAGCATGGACTCCAGGGGGCCAGCCTGGGCCACGCAGC  701
            |||||.||..|.||||||.|||||||.|||||||||||||||||.||.||||||||.||||||.||||      
Sbjct 4219  CCACCACCTTCCAAGCTGACTGCCTGTGAGCCCCTCAAGCATGGTCTTCAGGGGGCTAGCCTGAGCCA------  4286

Query  702  TGCAGCCCAGGCCCACCTGAGCTGCCGGGACCTGCCGCTGGGCCAGCCCCACTACGATTCCCCCAGCTGCAAGG  775
            |||.|||||.|||||||||||||||||||||||.||||||||||||||.|||||.||||||||.||.|||||||
Sbjct 4287  TGCTGCCCAAGCCCACCTGAGCTGCCGGGACCTACCGCTGGGCCAGCCTCACTATGATTCCCCTAGTTGCAAGG  4360

Query  776  GCACAGCCTATTGGTACCCTCCAGGCTCAGCTGCCCGCAGCCCGCCCTATGAAGGCAAGGTGGGTACAGGGCTG  849
            |.||||||||.||||||||.|||||.|||||||||||.|||||.||||||||||||||||||||..|.||||||
Sbjct 4361  GTACAGCCTACTGGTACCCACCAGGTTCAGCTGCCCGTAGCCCACCCTATGAAGGCAAGGTGGGCTCGGGGCTG  4434

Query  850  CTGGCTGACTTCCTGGGCAGGACGGAGGCCGCGTGCCTCAGTGCCCCTCACCTGGCTAGCCCACCAGCCACGCC  923
            ||||||||||||||||||||||||||.||.|..|||||||||||||||||||||||||||||||||||||||||
Sbjct 4435  CTGGCTGACTTCCTGGGCAGGACGGAAGCTGTCTGCCTCAGTGCCCCTCACCTGGCTAGCCCACCAGCCACGCC  4508

Query  924  CAAGGCCGACAAGGAGCCACTGGAAATGGCCCGGCCCCCTGGCCCACCCCGTGGCCCTGCTGCAGCCGCTGCTG  997
            ||||||||||||||||||||||||.||||||||||||||.||.||||||||||||||||||||||||.||||||
Sbjct 4509  CAAGGCCGACAAGGAGCCACTGGAGATGGCCCGGCCCCCGGGTCCACCCCGTGGCCCTGCTGCAGCCACTGCTG  4582

Query  998  GCTATGGCTGCCCACTCCTTAGTGACTTGACCCTGTCCCCCGTGCCGAGGGACTCGCTGCTGCCCCTGCAGGAC  1071
            ||||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||||||||||||||
Sbjct 4583  GCTATGGCTGCCCACTCCTTAGTGACTTAACTCTGTCCCCTGTGCCGAGGGACTCGCTGCTGCCCCTGCAGGAC  4656

Query 1072  ACCGCCTACAGGTACCCAGGCTTTATGCCCCAGGCGCATCCTGGCCTGGGTGGGGGCCCCAAGAGCGGCTTCCT  1145
            ||.|||||||||||.||||||||||||||.|||||.|||||||||||||||||||||||.|||||.||||||||
Sbjct 4657  ACTGCCTACAGGTATCCAGGCTTTATGCCGCAGGCACATCCTGGCCTGGGTGGGGGCCCTAAGAGTGGCTTCCT  4730

Query 1146  GGGGCCCATGGCGGAACCTCACCCCGAGGACACATTCACCGTCACATCTCTG  1197
            ||||||||||||.|||||||||||.|||||||||||.||||||||.||.|||
Sbjct 4731  GGGGCCCATGGCAGAACCTCACCCTGAGGACACATTTACCGTCACCTCCCTG  4782

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