Construct: ORF ccsbBroadEn_11858

Construct Description:

• Construct Type: ORF
• Other Identifiers: ORF007667.1_s300c1, BRDN0000397987
• DNA Barcode: None
• Epitope Tag: None
• Notes: No stop codon in insert

Originally Annotated References:

• Gene: AHDC1 (27245)

Vector Information:

• Vector Backbone: pDONR223
• Pol II Cassette 1: n/a
• Pol II Cassette 2: n/a
• Selection Marker: n/a
• Visible Reporter: n/a
• Epitope Tag: n/a

Current transcripts matched by this ORF:

	Taxon	Gene	Symbol	Description	Transcript	Nuc. Match %	Prot. Match %	Match Diffs
1	human	27245	AHDC1	AT-hook DNA binding motif c...	NM_001029882.3	24.8%	24.8%	1_3612del;4806C>T
2	human	27245	AHDC1	AT-hook DNA binding motif c...	NM_001371928.1	24.8%	24.8%	1_3612del;4806C>T
3	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_005245848.3	24.8%	24.8%	1_3612del;4806C>T
4	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_005245849.3	24.8%	24.8%	1_3612del;4806C>T
5	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_005245850.3	24.8%	24.8%	1_3612del;4806C>T
6	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_005245851.3	24.8%	24.8%	1_3612del;4806C>T
7	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_005245852.3	24.8%	24.8%	1_3612del;4806C>T
8	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_011541255.1	24.8%	24.8%	1_3612del;4806C>T
9	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_011541256.2	24.8%	24.8%	1_3612del;4806C>T
10	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_011541257.2	24.8%	24.8%	1_3612del;4806C>T
11	human	27245	AHDC1	AT-hook DNA binding motif c...	XM_024446461.1	24.8%	24.8%	1_3612del;4806C>T
12	human	27245	AHDC1	AT-hook DNA binding motif c...	XR_946609.2	17.9%		1_4679del;5873C>T;5877_6656del
13	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	NM_146155.3	22.4%	24%	(many diffs)
14	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538734.1	22.4%	24%	(many diffs)
15	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538736.2	22.4%	24%	(many diffs)
16	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538737.1	22.4%	24%	(many diffs)
17	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538738.3	22.4%	24%	(many diffs)
18	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538739.1	22.4%	24%	(many diffs)
19	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538740.1	22.4%	24%	(many diffs)
20	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538741.3	22.4%	24%	(many diffs)
21	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_006538742.1	22.4%	24%	(many diffs)
22	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_011250231.1	22.4%	24%	(many diffs)
23	mouse	230793	Ahdc1	AT hook, DNA binding motif,...	XM_017320159.1	22.4%	24%	(many diffs)

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:

66

ORF end:

1263

ORF length:

1197

Sequence:

1	gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61	TTGGCATGAT GGACTGGAAC GAGGCATCAT CTGCCCCCGG CTACAACTGG AACCAGAGTG
121	TCCTCTTTCA GAGTAGCTCC AAGCCGGGCC GTGGACGGCG GAAGAAGGTG GACCTGTTCG
181	AGGCCTCACA TCTGGGCTTC CCGACATCCG CCTCTGCCGC TGCCTCAGGC TACCCATCCA
241	AACGGAGCAC TGGGCCCCGG CAGCCGCGAG GTGGACGGGG CGGTGGGGCC TGCTCAGCCA
301	AGAAGGAGCG GGGTGGCGCA GCGGCCAAAG CCAAGTTCAT CCCCAAGCCA CAGCCAGTCA
361	ACCCACTGTT CCAGGACAGT CCTGACCTCG GCCTGGACTA CTATAGCGGG GACAGCAGCA
421	TGTCACCACT GCCCTCACAG TCGAGGGCCT TCGGCGTGGG AGAGCGAGAC CCCTGTGACT
481	TCATAGGACC CTACTCCATG AACCCGTCCA CGCCTTCCGA TGGCACCTTT GGCCAAGGCT
541	TCCACTGCGA CTCGCCCAGC CTGGGTGCTC CCGAGCTTGA TGGCAAGCAT TTCCCACCGC
601	TGGCCCACCC ACCCACGGTG TTTGACGCCG GCCTGCAGAA GGCATACTCG CCCACCTGCT
661	CGCCTACACT GGGCTTCAAG GAAGAGCTGC GGCCACCGCC CACAAAGCTG GCTGCCTGCG
721	AGCCCCTCAA GCATGGACTC CAGGGGGCCA GCCTGGGCCA CGCAGCTGCA GCCCAGGCCC
781	ACCTGAGCTG CCGGGACCTG CCGCTGGGCC AGCCCCACTA CGATTCCCCC AGCTGCAAGG
841	GCACAGCCTA TTGGTACCCT CCAGGCTCAG CTGCCCGCAG CCCGCCCTAT GAAGGCAAGG
901	TGGGTACAGG GCTGCTGGCT GACTTCCTGG GCAGGACGGA GGCCGCGTGC CTCAGTGCCC
961	CTCACCTGGC TAGCCCACCA GCCACGCCCA AGGCCGACAA GGAGCCACTG GAAATGGCCC
1021	GGCCCCCTGG CCCACCCCGT GGCCCTGCTG CAGCCGCTGC TGGCTATGGC TGCCCACTCC
1081	TTAGTGACTT GACCCTGTCC CCCGTGCCGA GGGACTCGCT GCTGCCCCTG CAGGACACCG
1141	CCTACAGGTA CCCAGGCTTT ATGCCCCAGG CGCATCCTGG CCTGGGTGGG GGCCCCAAGA
1201	GCGGCTTCCT GGGGCCCATG GCGGAACCTC ACCCCGAGGA CACATTCACC GTCACATCTC
1261	TGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1321	gcaacgaac

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