Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_11865
• Subject: XM_017016085.1
• Aligned Length: 1446
• Identities: 822
• Gaps: 576

Alignment

Query    1  -------------------------------------------------------ATGCATCATCAAAAGTACT  19
                                                                   |||||||||||||||||||
Sbjct    1  ATGGATCCCAGGGGTATCTTGAAGGCATTTCCCAAGCGGCAGAAAATTCATGCTGATGCATCATCAAAAGTACT  74

Query   20  TGCAAAGATTCCTAGGAGGGAAGAGGGAGAAGAAGCAGAAG-------GA----------GGCC-------TGC  69
            |||||||||||||||||||||||||||||||||||||||||       ||          ||||       |||
Sbjct   75  TGCAAAGATTCCTAGGAGGGAAGAGGGAGAAGAAGCAGAAGAGTGGCTGAGCTCCCTTCGGGCCCATGTTGTGC  148

Query   70  AGTATCCCTGGGATTGG------------------------GAAGCGGATGGCTGAGAAAATCATAG-----AG  114
                .|.||||.|||||                        |||||.|||.|.|.||     |||.|     ||
Sbjct  149  ----GCACTGGCATTGGACGAGCCCGGGCAGAACTCTTTGAGAAGCAGATTGTTCAG-----CATGGCGGCCAG  213

Query  115  AT----CCTG----GAGAGCGGG---------CATTTGCG------GAAG--CTGGACCATATCAGTGAG----  159
            .|    ||||    |.|..|.||         || |||.|      ||||  .|||||  |||.||.|||    
Sbjct  214  CTATGCCCTGCCCAGGGCCCAGGTGTCACTCACA-TTGTGGTGGATGAAGGCATGGAC--TATGAGCGAGCCCT  284

Query  160  --------------------AGC---------GT------------------GCCTGTCTTGGAGCT-----CT  181
                                |||         ||                  |||||.||  |||||     ||
Sbjct  285  CCGCCTTCTCAGACTACCCCAGCTGCCCCCGGGTGCTCAGCTGGTGAAGTCAGCCTGGCT--GAGCTTGTGCCT  356

Query  182  TC-----------------------------TCCAACATC-----------TGGGGAGCTGGGACCA-AGACTG  214
            ||                             |.||.||||           |.||.| ||.|||||| ..||.|
Sbjct  357  TCAGGAGAGGAGGCTGGTGGATGTAGCTGGATTCAGCATCTTCATCCCCAGTAGGTA-CTTGGACCATCCACAG  429

Query  215  CCCAG--------------------------------------ATGTGG-------------------------  225
            |||||                                      |||.||                         
Sbjct  430  CCCAGCAAGGCAGAGCAGGATGCTTCTATTCCTCCTGGCACCCATGAGGCCCTGCTTCAGACAGCCCTTTCTCC  503

Query  226  ---------TACCAACAGGGCT-----TCC--------------------------------------------  241
                     |.|||.||||.||     |||                                            
Sbjct  504  TCCTCCTCCTCCCACCAGGCCTGTGTCTCCTCCCCAAAAGGCAAAAGAGGCACCAAACACCCAAGCCCAGCCCA  577

Query  242  -----------GAAG-------------------------------------TCTGGAAGACATCCGCAG----  263
                       ||||                                     ||||||||.|.||..|||    
Sbjct  578  TCTCTGATGATGAAGCCAGTGATGGGGAAGAAACCCAGGTTAGTGCAGCTGATCTGGAAGCCCTCATCAGTGGC  651

Query  264  -------CCAGGCCTCCC-TGA---------------CAACCCAGC-----------------AG---------  288
                   |||  |||||| |||               .|.||||||                 ||         
Sbjct  652  CACTACCCCA--CCTCCCTTGAGGGAGATTGTGAGCCTAGCCCAGCCCCTGCTGTCCTGGATAAGTGGGTCTGT  723

Query  289  -----GCCATC-GGCCTGAAG------CATTACAGTGACTTC---------------CTGGAACGT--------  327
                 |||.|| .|||.||||      .||.|||   ||.||               |||||| ||        
Sbjct  724  GCACAGCCCTCAAGCCAGAAGGCGACCAATCACA---ACCTCCATATCACAGAGAAGCTGGAA-GTTCTGGCCA  793

Query  328  ATGCC---------CAGGGA-------GGAGG------------------------------CTACAGAGATT-  354
            |.|||         ||||||       |||||                              ||..||||.|| 
Sbjct  794  AAGCCTACAGTGTTCAGGGAGACAAGTGGAGGGCCCTGGGCTATGCCAAGGCCATCAATGCCCTCAAGAGCTTC  867

Query  355  ------------------GAGCAGACAGTCCAGAAAGCAGCCCAGGCCTTTAACTCTGGGCTGCTGTGTGTGGC  410
                              .|.|||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  868  CATAAGCCTGTCACCTCGTACCAG---GTCCAGAAAGCAGCCCAGGCCTTTAACTCTGGGCTGCTGTGTGTGGC  938

Query  411  ATGTGGTTCATACCGACGGGGAAAGGCGACCTGTGGTGATGTCGACGTGCTCATCACTCACCCAGATGGCCGGT  484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  939  ATGTGGTTCATACCGACGGGGAAAGGCGACCTGTGGTGATGTCGACGTGCTCATCACTCACCCAGATGGCCGGT  1012

Query  485  CCCACCGGGGTATCTTCAGCCGCCTCCTTGACAGTCTTCGGCAGGAAGGGTTCCTCACAGATGACTTGGTGAGC  558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013  CCCACCGGGGTATCTTCAGCCGCCTCCTTGACAGTCTTCGGCAGGAAGGGTTCCTCACAGATGACTTGGTGAGC  1086

Query  559  CAAGAGGAGAATGGTCAGCAACAGAAGTACTTGGGGGTGTGCCGGCTCCCAGGGCCAGGGCGGCGGCACCGGCG  632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087  CAAGAGGAGAATGGTCAGCAACAGAAGTACTTGGGGGTGTGCCGGCTCCCAGGGCCAGGGCGGCGGCACCGGCG  1160

Query  633  CCTGGACATCATCGTGGTGCCCTATAGCGAGTTTGCCTGTGCCCTGCTCTACTTCACCGGCTCTGCACACTTCA  706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161  CCTGGACATCATCGTGGTGCCCTATAGCGAGTTTGCCTGTGCCCTGCTCTACTTCACCGGCTCTGCACACTTCA  1234

Query  707  ACCGCTCCATGCGAGCCCTGGCCAAAACCAAGGGCATGAGTCTGTCAGAACATGCCCTCAGCACTGCTGTGGTC  780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235  ACCGCTCCATGCGAGCCCTGGCCAAAACCAAGGGCATGAGTCTGTCAGAACATGCCCTCAGCACTGCTGTGGTC  1308

Query  781  CGGAACACCCATGGCTGCAAGGTGGGGCCTGGCCGAGTGCTGCCCACTCCCACTGAGAAGGATGTCTTCAGGCT  854
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309  CGGAACACCCATGGCTGCAAGGTGGGGCCTGGCCGAGTGCTGCCCACTCCCACTGAGAAGGATGTCTTCAGGCT  1382

Query  855  CTTAGGCCTCCCCTACCGAGAACCTGCTGAGCGGGACTGG  894
            ||||||||||||||||||||||||||||||||||||||||
Sbjct 1383  CTTAGGCCTCCCCTACCGAGAACCTGCTGAGCGGGACTGG  1422