Construct: ORF ccsbBroadEn_11865

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015972.1_s300c1, BRDN0000396374
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POLL (27343)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 27343 POLL DNA polymerase lambda NM_001308382.1 99.3% 99.3% 1_6delATGCTG
2 human 27343 POLL DNA polymerase lambda XM_006717777.2 99.3% 99.3% 1_6delATGCTG
3 human 27343 POLL DNA polymerase lambda XM_011539664.2 97% 97% 1_6delATGCTG;537_557del
4 human 27343 POLL DNA polymerase lambda XM_011539665.2 97% 97% 1_6delATGCTG;537_557del
5 human 27343 POLL DNA polymerase lambda XM_011539666.1 97% 97% 1_6delATGCTG;537_557del
6 human 27343 POLL DNA polymerase lambda XM_017016093.1 97% 97% 1_6delATGCTG;537_557del
7 human 27343 POLL DNA polymerase lambda XM_006717775.2 94.9% 94.9% 1_6delATGCTG;65_106del
8 human 27343 POLL DNA polymerase lambda XM_006717776.1 94.9% 94.9% 1_6delATGCTG;65_106del
9 human 27343 POLL DNA polymerase lambda XM_011539662.2 92.8% 92.8% 1_6delATGCTG;65_106del;579_599del
10 human 27343 POLL DNA polymerase lambda XM_011539663.1 92.8% 92.8% 1_6delATGCTG;65_106del;579_599del
11 human 27343 POLL DNA polymerase lambda XM_011539667.1 89.5% 89.5% 0_1ins93
12 human 27343 POLL DNA polymerase lambda XM_024447945.1 85.1% 83.6% (many diffs)
13 human 27343 POLL DNA polymerase lambda XM_024447944.1 83.4% 81.9% (many diffs)
14 human 27343 POLL DNA polymerase lambda XM_017016091.2 73.3% 73.3% 1_6delATGCTG;65_382del
15 human 27343 POLL DNA polymerase lambda XM_011539660.1 72.1% 72.1% 1_6delATGCTG;65_382del;855_875del
16 human 27343 POLL DNA polymerase lambda XM_017016089.1 72.1% 72.1% 1_6delATGCTG;65_382del;855_875del
17 human 27343 POLL DNA polymerase lambda XM_017016087.1 65.4% 53.1% (many diffs)
18 human 27343 POLL DNA polymerase lambda XM_017016086.2 62.6% 60.3% (many diffs)
19 human 27343 POLL DNA polymerase lambda XM_011539656.1 61.7% 59.4% (many diffs)
20 human 27343 POLL DNA polymerase lambda NM_001174085.1 61.1% 58.3% (many diffs)
21 human 27343 POLL DNA polymerase lambda XM_011539655.1 61.1% 58.3% (many diffs)
22 human 27343 POLL DNA polymerase lambda XM_011539654.1 60.2% 57.5% (many diffs)
23 human 27343 POLL DNA polymerase lambda XM_024447943.1 60% 56.2% (many diffs)
24 human 27343 POLL DNA polymerase lambda XM_011539657.1 59.2% 55.4% (many diffs)
25 human 27343 POLL DNA polymerase lambda XM_024447942.1 59.2% 55.4% (many diffs)
26 human 27343 POLL DNA polymerase lambda XM_017016085.1 56.8% 37.6% (many diffs)
27 human 27343 POLL DNA polymerase lambda XM_017016084.1 56% 37.1% (many diffs)
28 human 27343 POLL DNA polymerase lambda NM_001174084.2 50.8% 47.7% (many diffs)
29 human 27343 POLL DNA polymerase lambda NM_013274.3 50.8% 47.7% (many diffs)
30 human 27343 POLL DNA polymerase lambda XM_011539651.1 50.8% 47.7% (many diffs)
31 human 27343 POLL DNA polymerase lambda XM_011539650.1 50.2% 47.2% (many diffs)
32 human 27343 POLL DNA polymerase lambda XM_011539652.2 50.2% 47.2% (many diffs)
33 human 27343 POLL DNA polymerase lambda XM_011539653.1 50.2% 47.2% (many diffs)
34 human 27343 POLL DNA polymerase lambda NR_033406.1 37.5% (many diffs)
35 mouse 56626 Poll polymerase (DNA directed), ... NM_001330506.1 44.7% 42.9% (many diffs)
36 mouse 56626 Poll polymerase (DNA directed), ... NM_020032.3 44.7% 42.9% (many diffs)
37 mouse 56626 Poll polymerase (DNA directed), ... XM_011247301.2 44.7% 42.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
960
ORF length:
894
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA TCATCAAAAG TACTTGCAAA GATTCCTAGG AGGGAAGAGG GAGAAGAAGC
121AGAAGGAGGC CTGCAGTATC CCTGGGATTG GGAAGCGGAT GGCTGAGAAA ATCATAGAGA
181TCCTGGAGAG CGGGCATTTG CGGAAGCTGG ACCATATCAG TGAGAGCGTG CCTGTCTTGG
241AGCTCTTCTC CAACATCTGG GGAGCTGGGA CCAAGACTGC CCAGATGTGG TACCAACAGG
301GCTTCCGAAG TCTGGAAGAC ATCCGCAGCC AGGCCTCCCT GACAACCCAG CAGGCCATCG
361GCCTGAAGCA TTACAGTGAC TTCCTGGAAC GTATGCCCAG GGAGGAGGCT ACAGAGATTG
421AGCAGACAGT CCAGAAAGCA GCCCAGGCCT TTAACTCTGG GCTGCTGTGT GTGGCATGTG
481GTTCATACCG ACGGGGAAAG GCGACCTGTG GTGATGTCGA CGTGCTCATC ACTCACCCAG
541ATGGCCGGTC CCACCGGGGT ATCTTCAGCC GCCTCCTTGA CAGTCTTCGG CAGGAAGGGT
601TCCTCACAGA TGACTTGGTG AGCCAAGAGG AGAATGGTCA GCAACAGAAG TACTTGGGGG
661TGTGCCGGCT CCCAGGGCCA GGGCGGCGGC ACCGGCGCCT GGACATCATC GTGGTGCCCT
721ATAGCGAGTT TGCCTGTGCC CTGCTCTACT TCACCGGCTC TGCACACTTC AACCGCTCCA
781TGCGAGCCCT GGCCAAAACC AAGGGCATGA GTCTGTCAGA ACATGCCCTC AGCACTGCTG
841TGGTCCGGAA CACCCATGGC TGCAAGGTGG GGCCTGGCCG AGTGCTGCCC ACTCCCACTG
901AGAAGGATGT CTTCAGGCTC TTAGGCCTCC CCTACCGAGA ACCTGCTGAG CGGGACTGGT
961GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1021acgaac

Download FASTA (ORF) (Full)