Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11931
Subject:
XR_001737207.1
Aligned Length:
3951
Identities:
962
Gaps:
2966

Alignment

Query    1  ----------------------------------------------ATGGCGACTGATACGTCTCAAG------  22
                                                          .|||||   ||..||.||  ||      
Sbjct    1  GGGGGGCGGGGCGGCAGAGCTCGGCGGCTGGGACTGGAGGACAGCGGTGGCG---GAGGCGACT--AGCGGCGG  69

Query   23  -GTGAAC-TCGTCCATCCTA-AGGC--------ACTC-----CCACTTATAGTAGGAGCTCAGCTGATCCACGC  80
             |.||.| .||     ||.| ||||        ||.|     ||         ||||  .|.||.||   ||||
Sbjct   70  CGGGAGCGGCG-----CCGAGAGGCCGTGCGGGACGCGGGCGCC---------AGGA--CCGGCCGA---ACGC  124

Query   81  GGACAAGTTAGGTGAGGTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTC  154
            .||.|         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  125  AGAGA---------AGGTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTC  189

Query  155  CCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACT  228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  CCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACT  263

Query  229  GTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAA  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  264  GTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAA  337

Query  303  TGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGA  376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  338  TGAAGAGAAGGAAGAAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGA  411

Query  377  AGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACA  450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  412  AGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACA  485

Query  451  CCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAG  524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  486  CCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAG  559

Query  525  TGGTGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTT  598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  560  TGGTGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTT  633

Query  599  ATCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCT  672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  634  ATCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCT  707

Query  673  GGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGC  746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  708  GGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGC  781

Query  747  AGTGGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAG  820
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  782  AGTGGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAG  855

Query  821  AAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAG  894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  856  AAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAG  929

Query  895  CTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGG  968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  930  CTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGG  1003

Query  969  GACATTCCAGAAATGGGGTTTCGCCG-------TGTTGCCCAGG---CTACTCTTGAACTCC--TGGGTTCAG-  1029
            ||||||||||.||        |.|||       ||.|||..|||   ||..||||||.||.|  ||||   || 
Sbjct 1004  GACATTCCAGGAA--------CTCCGACCCACCTGGTGCAGAGGAGTCTTGTCTTGACCTGCTTTGGG---AGA  1066

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1067  GTGTTGTCTTGATGCTTTTCTCTTCCTCCTTGGAAAACAGCTGAAGAAATCAGGGGAGAAACCCCTGCTTGGTG  1140

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1141  GAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCATGAATGAGCCGAAGACCTGCTCTACCACTGCT  1214

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1215  CTGAAGAAGTATGTCCTAGAGAATCACCCAGGAACCAATTCTAACTATCAAATGCATTTGCTGAAAAAAACCCT  1288

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1289  GCAGAAATGCGAAAAGAATGGGTGGATGGAACAGATCTCTGGGAAAGGGTTCAGTGGCACCTTCCAGCTCTGTT  1362

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1363  TTCCCTATTATCCCAGCCCAGGAGTTCTGTTTCCGAAGAAAGAGCCAGATGATTCTAGAGATGAGGATGAAGAT  1436

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1437  GAAGATGAGTCATCAGAAGAAGACTCTGAGGATGAAGAGCCGCCACCTAAGAGAAGGTTGCAGAAGAAAACCCC  1510

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1511  AGCCAAGTCCCCAGGGAAGGCCGCATCTGTGAAGCAGAGAGGGTCCAAACCTGCACCTAAAGTCTCAGCTGCCC  1584

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1585  AGCGGGGGAAAGCTAGGCCCTTGCCTAAGAAAGCACCTCCTAAGGCCAAAACGCCTGCCAAGAAGACCAGACCC  1658

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1659  TCATCCACAGTCATCAAGAAACCTAGTGGTGGCTCCTCAAAGAAGCCTGCAACCAGTGCAAGAAAGGAAGTAAA  1732

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1733  ATTGCCGGGCAAGGGCAAATCCACCATGAAGAAGTCTTTCAGAGTGAAAAAGTAAATTTTATAGGAAAAAAGGG  1806

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1807  TATCATGATGAAATTCAAAATCTTATTTTCTAAGGTCAGTGTGCATTTGTTTAGTTTTGATGCTTTTCAAATTA  1880

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1881  CATTATTTTCCTCCCCTATGAACATTGTGGGGAGGGACTCTAAATAAACCAGTTTAGGCATTTGCTAGCTTTAG  1954

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1955  GTGCTTTTATTGGTGCCTGCCCTTTTCCTTGTTCATTTTAATTTCTGCAATAATCCTGGACTTTCCTAAACTAT  2028

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2029  GTAATGTATACTTGTCCTTTTTCTCTGCCTCCCCCAACCCCCTGTTGTTTTTATGGTCAGCTTTGCCTTTTTTT  2102

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2103  TTTCTTCCAATTTTATCTAAACAGTTGCAGAGATTTTTATATTTGTAGAAAGCATCAAGAACGGTATGCCAGTC  2176

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2177  AGGTCCTGGAAGTAAAATGGAGGCACAATATAGCACTGACTGAGTTGTAAAGCCTCCTGCCTGGAGACTTCAGT  2250

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2251  TATAGCTGTAATAATTAATCTTATTTATAAAAGCCACTCCACTAACCTTTTCTCTCCAACTGTAAACACAGAGA  2324

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2325  CAGCTTTGGGAATAAGCCAAAAACAGGGTGATCTCATTAGATTTTGAAGATATATGACTCCTTTGGGCTACATT  2398

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2399  TCATATTGATCAATTTCTAGGTATTTTTCACTGGCCCAAAGTATTGCATTCCCTTAACAGCAAGCACAAGTTCT  2472

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2473  CTATATCACTTGTTTTTTGTTGTTGTTGTTGTTGTCGTCGTTGTTTTGAGACGGAGTCTTGCTCAGGTGCCCCG  2546

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2547  GAGTGCAGTGGTGCAATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCAATTCTCCTGCTTCAGCCTC  2620

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2621  CCGAGTAGCTGGGATTACAGGTGTGTACCACCACGCCTGGCAATTTTTTTGTATTTTTAGTAGAGATGGGGTTT  2694

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2695  CGCCGTGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGG  2768

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2769  GATTACAGGAGTGAGCCACTGTGCCTGGCCTATCCCACTTGGTTTTTGACTGAAGGGGAAGTGTAGAAATATAT  2842

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2843  TGATTTGTGATTTCTGGTGTCACCTGTGTTACCAAAAATCAAAACAAATCTTTTTTATTTTTTATTATTATTAT  2916

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2917  TATTTTTGAGACAGAGTCTCGCTCTGTCGCCCAGTGTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAAACTC  2990

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2991  CGCCTCCCAGGTTCAAGCGATTCTCCCACCTCAGCCTCCTGAGTTGGGTCCTACAGGCGCACACGACCACGCCC  3064

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3065  AGCTAATTTTTTGTATTTTTAGTAGAGTTGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTC  3138

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3139  GTGATCCACTCACCTCAGCCTCCCAAAATCCTGGGGTTACAGATGTGAGCTACCACTCACGGCCCAAATCTTCT  3212

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3213  TGATCATATGTTTAAATATATTTTTTAATATTTGGAGCATGAGTTGTCACTTCTTGTTTGCCTTTTTTATAAGG  3286

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3287  AAATGTTGGAGAGTTACATCATTGCTAATGTAGAAATGTTAAGTGGAAAAATATACAGTTTGGTAAAATAAACT  3360

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3361  AGATTCTACATTTATTTGTGGGTTTTTTTCCCCTCCTTTCTTTCCACAGCACTTTTGATATCAAGCAAGTGGCT  3434

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3435  TCCTTTTTGAGATATTAAAAAAAAAAAGAAAAGGAAAAAAGTAAATGAAGCCCAACTACCTAACCCTTTCTTAT  3508

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3509  TTGTATTTGTTTTAGTATTGTGAAGTTGTGTTAAATAGTACTAGCTAGAAATACAAATTTCTGGTTATCATTTC  3582

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3583  TCTTCCCTGTGGCACTTGACATTTTAATTGTCTTAAAGTTTTTGAAGTACATCTTCTGGCCCCTTGAGTACTGC  3656

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3657  CAGAGGCAAAAGATGTTTGTTTCTTATTCATTCCACTTTTGTCTCCTGGGATCCCTTCTGTAGCCTAAAGTATG  3730

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3731  GCTGGGAAATGGACTTGAGAAGATTGGCTTGAATTAGATCATAATCATGTGTGATCCCATCATGAATTCATTGG  3804

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3805  AATTTGTGTTGCATGTAAGGCAATCTTTCCTGTTGTAAATCTTCCTTTTTTAATGTACATATATTTTGAAAAAT  3878

Query 1030  -----------------------------  1029
                                         
Sbjct 3879  ATGAATAAACATGAAATTTTAAAAGCTGC  3907

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