Construct: ORF ccsbBroadEn_11931
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016394.1_s300c1, BRDN0000391531
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HP1BP3 (50809)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | NM_001372052.1 | 61% | 59.5% | (many diffs) |
| 2 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | NM_016287.5 | 61% | 59.5% | (many diffs) |
| 3 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245876.3 | 61% | 59.5% | (many diffs) |
| 4 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245877.5 | 61% | 59.5% | (many diffs) |
| 5 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245878.5 | 61% | 59.5% | (many diffs) |
| 6 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_017001393.1 | 61% | 59.5% | (many diffs) |
| 7 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_005245879.4 | 54.5% | 52.9% | (many diffs) |
| 8 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_011541532.1 | 54.5% | 52.9% | (many diffs) |
| 9 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_011541533.1 | 54.5% | 52.9% | (many diffs) |
| 10 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_011541534.2 | 54.5% | 52.9% | (many diffs) |
| 11 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_017001394.1 | 54.5% | 52.9% | (many diffs) |
| 12 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_024447376.1 | 33.9% | 32.3% | (many diffs) |
| 13 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XM_024447377.1 | 33.9% | 32.3% | (many diffs) |
| 14 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XR_001737207.1 | 24.3% | (many diffs) | |
| 15 | human | 50809 | HP1BP3 | heterochromatin protein 1 b... | XR_001737206.2 | 21.9% | (many diffs) | |
| 16 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001122897.2 | 54.8% | 55.1% | (many diffs) |
| 17 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285478.1 | 54.8% | 55.1% | (many diffs) |
| 18 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_010470.3 | 54.8% | 55.1% | (many diffs) |
| 19 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538568.4 | 54.8% | 55.1% | (many diffs) |
| 20 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285479.1 | 54.6% | 55.1% | (many diffs) |
| 21 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285481.1 | 52.7% | 53.1% | (many diffs) |
| 22 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253218.1 | 52.7% | 53.1% | (many diffs) |
| 23 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253219.1 | 52.6% | 53.1% | (many diffs) |
| 24 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538565.4 | 50.2% | 48.1% | (many diffs) |
| 25 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538566.4 | 50% | 48.1% | (many diffs) |
| 26 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001122896.2 | 48.6% | 49.2% | (many diffs) |
| 27 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001356432.1 | 48.6% | 49.2% | (many diffs) |
| 28 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538570.3 | 48.6% | 49.2% | (many diffs) |
| 29 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253220.1 | 48.6% | 49.2% | (many diffs) |
| 30 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253221.1 | 48.6% | 49.2% | (many diffs) |
| 31 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253222.1 | 48.6% | 49.2% | (many diffs) |
| 32 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253223.1 | 48.4% | 49.2% | (many diffs) |
| 33 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_006538567.4 | 48.3% | 46.2% | (many diffs) |
| 34 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XM_030253217.1 | 48.1% | 46.2% | (many diffs) |
| 35 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001285480.1 | 46.5% | 47.3% | (many diffs) |
| 36 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | NM_001356431.1 | 46.4% | 47.3% | (many diffs) |
| 37 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XR_003954880.1 | 40.4% | (many diffs) | |
| 38 | mouse | 15441 | Hp1bp3 | heterochromatin protein 1, ... | XR_001784094.2 | 25.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1098
- ORF length:
- 1029
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGACTGAT ACGTCTCAAG GTGAACTCGT CCATCCTAAG GCACTCCCAC 121 TTATAGTAGG AGCTCAGCTG ATCCACGCGG ACAAGTTAGG TGAGGTAGAA GATAGCACCA 181 TGCCGATTCG TCGAACTGTG AATTCTACCC GGGAAACTCC TCCCAAAAGC AAGCTTGCTG 241 AAGGGGAGGA AGAAAAGCCA GAACCAGACA TAAGTTCAGA GGAATCTGTC TCCACTGTAG 301 AAGAACAAGA GAATGAAACT CCACCTGCTA CTTCGAGTGA GGCAGAGCAG CCAAAGGGGG 361 AACCTGAGAA TGAAGAGAAG GAAGAAAATA AGTCTTCTGA GGAAACCAAA AAGGATGAGA 421 AAGATCAGTC TAAAGAAAAG GAGAAGAAAG TGAAAAAAAC AATTCCTTCC TGGGCTACCC 481 TTTCTGCCAG CCAGCTAGCC AGGGCCCAGA AACAAACACC GATGGCTTCT TCCCCACGTC 541 CCAAGATGGA TGCAATCTTA ACTGAGGCCA TTAAGGCATG CTTCCAGAAG AGTGGTGCAT 601 CAGTGGTTGC TATTCGAAAA TACATCATCC ATAAGTATCC TTCTCTGGAG CTGGAGAGAA 661 GGGGTTATCT CCTTAAACAA GCACTGAAAA GAGAATTAAA TAGAGGAGTC ATCAAACAGG 721 TTAAAGGAAA AGGTGCTTCT GGAAGTTTTG TTGTGGTTCA GAAATCAAGA AAAACACCTC 781 AGAAATCCAG AAACAGAAAG AATAGGAGCT CTGCAGTGGA TCCAGAACCA CAAGTAAAAT 841 TGGAGGATGT CCTCCCACTG GCCTTTACTC GCCTTTGTGA ACCTAAAGAA GCTTCCTACA 901 GTCTCATCAG GAAATATGTG TCTCAGTATT ATCCTAAGCT TAGAGTGGAC ATCAGGCCTC 961 AGCTGTTGAA GAACGCTCTG CAGAGAGCAG TAGAGAGGGG CCAGTTAGAA CAGATAACTG 1021 GCAAAGGTGC TTCGGGGACA TTCCAGAAAT GGGGTTTCGC CGTGTTGCCC AGGCTACTCT 1081 TGAACTCCTG GGTTCAGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1141 gcttatcaat ttgttgcaac gaac