Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11931
Subject:
XR_001784094.2
Aligned Length:
3477
Identities:
888
Gaps:
2473

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGGAGGAGGGGCAGCTCTTCTCGGGTCGGGCCCACCCCCCCTCCGTGCTTGTCTCAGTGCGCATGCTCCGGCG  74

Query    1  -------------------------------------------------ATGG--CGACTGATACGTCTC----  19
                                                             .|||  |||||  |.||.|.|    
Sbjct   75  TGCGCCGCGGAGCCCTATTGGCTGCGGGCTTGCGCATGCTCCGAGGCCTGTGGCCCGACT--TCCGCCGCGCCC  146

Query   20  ---------------AAGGTGAACTCGTC--CA-------TCCTAA-------GGCACTCCCACTTATAGT-AG  61
                           |..||.||||.|||  ||       |.|.||       |||||         |||| ||
Sbjct  147  TCCTCCCCTCGGCCTACTGTCAACTTGTCTTCAAGCCCGGTTCGAAAGATGCCGGCAC---------TAGTGAG  211

Query   62  GAGCT------------------CAGCTGATCCAC----------------GCGGACAAGTTAGGTGAG-----  96
            ..|||                  |.|||..|||.|                ||.|.||  |||.| |||     
Sbjct  212  TGGCTGCGGCGGGCCCGCCCTCCCGGCTTCTCCGCCCCCGCCGCCGCCGTGGCCGCCA--TTACG-GAGTCCCC  282

Query   97  -------GTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCA  163
                   |.||||||||.|||||||||.||.||||||.|.|||||||||||||||||||||||.||||||||||
Sbjct  283  AGTGAAAGCAGAAGATACCACCATGCCTATACGTCGAGCCGTGAATTCTACCCGGGAAACTCCACCCAAAAGCA  356

Query  164  AGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAA  237
            |.|||||||||||||||||||||||.|||||||||||...||||||||||||||||.||||.||||||||||||
Sbjct  357  AACTTGCTGAAGGGGAGGAAGAAAAACCAGAACCAGATGGAAGTTCAGAGGAATCTATCTCTACTGTAGAAGAA  430

Query  238  CAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAA  311
            ||.||||||||.||||||||||||||.||.|||||||||||||||||.||||||||.|||||||.||.||||||
Sbjct  431  CAGGAGAATGAGACTCCACCTGCTACATCCAGTGAGGCAGAGCAGCCCAAGGGGGAGCCTGAGAGTGGAGAGAA  504

Query  312  GGAAG------AAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGA  379
            |||||      |.||.||||||.||||||||.||||||||||||||||.|||||||||||||||||||||||||
Sbjct  505  GGAAGAGAACAACAACAAGTCTGCTGAGGAACCCAAAAAGGATGAGAAGGATCAGTCTAAAGAAAAGGAGAAGA  578

Query  380  AAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCG  453
            ||||||||||.||.||||||.|||||||.||.||.||||||||||||||||||||||||||||.||||||.||.
Sbjct  579  AAGTGAAAAAGACGATTCCTGCCTGGGCGACTCTCTCTGCCAGCCAGCTAGCCAGGGCCCAGAGACAAACCCCC  652

Query  454  ATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGG  527
            ||||||||.||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  653  ATGGCTTCCTCCCCACGGCCCAAGATGGACGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGACTGG  726

Query  528  TGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATC  601
            .||.||.||||||||.||||||||.||||||||.||||||||.||.|||||||..||||||||||||||.||||
Sbjct  727  CGCCTCGGTGGTTGCGATTCGAAAGTACATCATTCATAAGTACCCGTCTCTGGGTCTGGAGAGAAGGGGCTATC  800

Query  602  TCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGA  675
            |.||.||.|||||.|||||.|||||.|||||.|||||||||||||.||||||.||||||||||||||.|||||.
Sbjct  801  TGCTCAAGCAAGCGCTGAAGAGAGAGTTAAACAGAGGAGTCATCAGACAGGTAAAAGGAAAAGGTGCATCTGGC  874

Query  676  AGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGT  749
            ||||||||||||||.||||||||   ||||.|||||||||||||||.||||||||||||   |.||||.||..|
Sbjct  875  AGTTTTGTTGTGGTCCAGAAATC---AAAACCACCTCAGAAATCCAAAAACAGAAAGAA---GGGCTCGGCTCT  942

Query  750  GGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAG  823
            ||||||||||||||||||||||.||||.|||||.|||||..||||.||||||||.||.||||||||||||||||
Sbjct  943  GGATCCAGAACCACAAGTAAAACTGGAAGATGTTCTCCCGTTGGCTTTTACTCGGCTCTGTGAACCTAAAGAAG  1016

Query  824  CTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTG  897
            |||||||||||||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||.|||.||
Sbjct 1017  CTTCCTACAGTCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAGCTCAGAGTGGACATCAGGCCCCAGTTG  1090

Query  898  TTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGAC  971
            ||||||||.|||||||||.|||||||||||||.||||||.|.||.||||||||||||||.||||||||||||||
Sbjct 1091  TTGAAGAATGCTCTGCAGCGAGCAGTAGAGAGAGGCCAGCTCGAGCAGATAACTGGCAAGGGTGCTTCGGGGAC  1164

Query  972  ATTCC------AGAAAT--GGGGTTTCGCC--------GTG---------------------------------  996
            |||.|      ||||||  ||||....|||        |||                                 
Sbjct 1165  ATTTCAGCTGAAGAAATCAGGGGAGAAGCCCCTGCTGGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCA  1238

Query  997  TTGC--CCAGG-------------------------CTACTCTTGAA-------CTCCTGGGTTCAG-------  1029
            ||||  |||.|                         ||.||| ||||       .||||||    ||       
Sbjct 1239  TTGCTGCCATGAACGAGCCTAAGACCTGCTCCACCACTGCTC-TGAAGAAGTATGTCCTGG----AGAACCACC  1307

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1308  CAGGGGCCAACTCTAACTATCAGATGCATTTGCTGAAAAAAACCCTGCAGAAATGTGAGAAGAACGGGTGGCTG  1381

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1382  GAGCAGATCTCTGGGAAGGGGTTCAGCGGCACCTTCCAGCTGTCCTTCCCCTACTACCCTAGCCCAGGAGTTCT  1455

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1456  ATTTCCGAAGAAAGAATCCGGTGGCTCTGACGATGAAGATGAAGATGACGATGACGATGAATCATCAGAAGACT  1529

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1530  CTGAGGATGAGGAACCACCACCCAAGAGGAGGTGTGATCTGAGGAAGCTACTGAGACGGATGATAAATCTCTCA  1603

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1604  GAGCTGAAAATGGAGTTGGGCTTGTAATTCCAGATATTAAGGAGGAGACTGAAGCAGAGCTGGAAGTTGATGGC  1677

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1678  CAGTGGGGGCAGCTTATTGAAACACCATCTCAAAAAGTAAAACAAGGCCTGGGGACATAGCTTACAGAAGAAAA  1751

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1752  CACCAGCCAAGTCCCAAGGGAAGACAGCCTCCATGAAGCAGAGAGGGTCGAAGCCTGCGCGGAAAGTCCCGGCT  1825

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1826  GCCCAGAGAGGGAAAGTGAGGCCGCTGCCTAAGAAAGCTCCACCCAAGGCCAAGACCCCTGCCAGGAAAGCCAG  1899

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1900  ACCCTCTCCCTCAGTCATCAAGAAGCCTAGTGGGAGCTCCTCCAGAAAGCCCATAGCCAGTGCACGAAAGGAAG  1973

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1974  CGAAACTGCCCGGGAAGGGCAAATCTGCCATGAAGAAGTCTTTCAAGACAAAAAAGTAAATTTTATAGGGAAAA  2047

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2048  GGGTATCATGATTGAATTCAGAATCTTACTTTATAAGGTCAGTGTGCATTTGTTCTAGTTATAATGCTTTTAAA  2121

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2122  TTGTACTTTTTCTTCCCATGTGAGCATTGTGGGAAGGAATGGACACAGAGCAGCGTAGACATTTGTGAGCTTCG  2195

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2196  GTGCTGTTCAGTGCCTGCTTCTTCATCACCTTAATTTCTGCCATAACCTGGACTTCGCTGACTGTGTGACTGCC  2269

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2270  CTGCTCCCTCTGTTCATCTTAGCCCCAGCCCTCGTCCTCTTTCTGTGATCCGATTGAGGATTTTTTCCTCCTTC  2343

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2344  AAGTTAATTTAAACAACTGCAGAGATGTGTTTGTAGAGCACTTAGAGGTCTGGGGCTGGAAGTCCAGACGGCGC  2417

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2418  AGGAGCAGTGTTGGGAAGGCTTTGCGTCCTGCCTGCAGACTTGCTAGAGCTGTGGTGATTAACCCTGGCTGTTG  2491

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2492  AATCACTCCACTGACCAGTCTCCAGCTTGAGTCGGGGACATGTTAACTTCGGAAAGAAGCCCCCGTCCCTGCCA  2565

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2566  TCCCATAGATTCTGAAGGGCTCCTCTCCTCCGGTCACGCTGACCAACTGCCAAGCTCGCTTTGCTGCCCAGAGC  2639

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2640  ACTGTCCCCTCACAGCAAGCACAAGTTGTCTGCACCACTTGGTTTCTGACTGAAGGGGAAGTACAGGACTACAT  2713

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2714  GGAATCTGATTTCTGGTGTTGCTTATTACCAAAAATGACAGAATATTCTTGATCAAATGTCTAGATATATTTTT  2787

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2788  AATATTTGGGGCATGAGTTGTCCCTGTTTGAGAGTTCCCATTACTAATGTAGAAATGTTAAATGGTAAAACATA  2861

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2862  ATTTGCTAAAATGACCAGTTTTCAGATTCACCTGTGCGTGTGCCCCCCACTCCCATCCCACCCTGTTCTTTCCA  2935

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2936  TAGAACTTTTGATATCAGGCAAACGGTTTCCTTTTTGAGATATTTTAACAGAGAAGGGGTGGGGGAGAAGCAGA  3009

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3010  TGAAGCTGTACTACCCAGCCCTCTTCTTGTTTGTATTTGTTTAGGGTTGTGAGGTTGTGTAAAATAGTACTAGC  3083

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3084  TTCTTACTTGAGAACTACAGTTTCTGCTTATCATTTATTCTTCCTTGTGGCACTTAATATTTTAATTGTCTTAA  3157

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3158  GCTTTTTGATGTATATATCCTCTGGCCCCTTACATGCTGCCAGAGGAGAAGGTGTTTGTTTGAGATTCATTCCA  3231

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3232  CTTGAAGTGTCTCCTGGGATCCCCACAGCTGCGTATGGCTGGGAAATGGACTTAAGGCTTGGGCTTGAATTGGT  3305

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 3306  GGCTCCTACCTGTGAGGTCCCATCGTGAGTCACTGGGATTTGTGTTGCATGGAAGGCAGTCTTTCCTGTTGTAA  3379

Query 1030  -------------------------------------------------------------------------  1029
                                                                                     
Sbjct 3380  ATCTTCCTTTTTTATGTACAAATATTTTGAAAAATATGAATAAACATGAACTTTTAAAAGCTGCTGAACTACA  3452

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