Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11953
Subject:
NR_160431.1
Aligned Length:
2915
Identities:
1117
Gaps:
1763

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCGGACCTCTCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGCTGGGCCGACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTGTGGTTGGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGGGTTGCAAGGA  296

Query    1  ------------ATGTTA-ATTGATGAAAGGTTACGATGTGAGCATCATA----------------AAG--CTA  43
                        .||.|| |..||.||.|..|...||| ||||.|||.||                |||  .||
Sbjct  297  GCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGAT-TGAGGATCTTATGACCTACTTTAGAGGAAGGTATA  369

Query   44  ATT-------ATCAGACACTG-----------AAGG-------------CT------GAACAC----ACAAGGT  76
            |||       .|.|||..|||           ||||             ||      |||.||    |||  ||
Sbjct  370  ATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTAAAACA--GT  441

Query   77  TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA  515

Query  151  CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA  224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA  589

Query  225  GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC  663

Query  299  GTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTT  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  GTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTT  737

Query  373  CTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATC  446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  CTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATC  811

Query  447  AGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACA  520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  AGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACA  885

Query  521  GCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTA  594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  GCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTA  959

Query  595  GCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTT  668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  GCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTT  1033

Query  669  GGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTTGG  742
            ||||||||||||||||||||||||||||||||                                          
Sbjct 1034  GGCTGAGATGCAGGCTACAGTCAGATCCCTGG------------------------------------------  1065

Query  743  AAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATA  816
                                                                                      
Sbjct 1066  --------------------------------------------------------------------------  1065

Query  817  AATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGAC  890
                                                                                      
Sbjct 1066  --------------------------------------------------------------------------  1065

Query  891  AGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACA  964
                                                                                      
Sbjct 1066  --------------------------------------------------------------------------  1065

Query  965  ATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAA  1038
                                                                                      
Sbjct 1066  --------------------------------------------------------------------------  1065

Query 1039  GTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAG  1112
                                                                                      
Sbjct 1066  --------------------------------------------------------------------------  1065

Query 1113  ATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGA  1186
                                                                                      
Sbjct 1066  --------------------------------------------------------------------------  1065

Query 1187  AATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAA  1260
                                                                    ||||||||||||||||||
Sbjct 1066  --------------------------------------------------------AGGTTAAAACTTCAGCAA  1083

Query 1261  CAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTT  1334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084  CAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTT  1157

Query 1335  GCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGG  1408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158  GCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGG  1231

Query 1409  TGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACA  1482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232  TGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACA  1305

Query 1483  TTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAA  1556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306  TTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAA  1379

Query 1557  GTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAG---------CTTGA--------  1613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||.|        
Sbjct 1380  GTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACA  1453

Query 1614  -------------ACAGGA-----------TCTT----------------GAGTTGG-----------------  1630
                         |||.||           ||||                ||.||||                 
Sbjct 1454  AATTGAAAAGACTACAAGAGAAAGTAGAAGTCTTGGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGGTC  1527

Query 1631  ------------GATG-CCCTTCTG-TGACTGATAC-------------------------ATACAGAGA----  1661
                        .||| .||||.|| .|||| ||||                         |||||||||    
Sbjct 1528  TTAAATAGACAAAATGTTCCTTTTGAAGACT-ATACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAGAC  1600

Query 1662  -------------GAGTGTA-------TTCCCCCCA--CCCCCATTGAAGAGAG-ATCT--------------C  1698
                         .|||.||       ||||...||  ||.|||      |.|| ||||              |
Sbjct 1601  ATAATGAATTTCGAAGTCTAATTTTGGTTCCTAACATGCCTCCA------ACAGCATCTATCAATCCTGTTAGC  1668

Query 1699  TTGAAG--------------------------------------------------------------------  1704
            ||..||                                                                    
Sbjct 1669  TTTCAGTCATCAGCCATGGTTCCAAGCATGGAACTACCATTTCCTCCTCATATGCAGGAGGAACAACATCAAAG  1742

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 1743  GGAACTCTCTCTACTTCGCAAAAGACTAGAAGAACTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGGAT  1816

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 1817  CTTCCGGAGAATGATGTTCTTGGAGAACAGGCAGATCAAAAGAGGTGAAGTTGGTGACTCAGTAAAACTTGACA  1890

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 1891  TTTTAACCTGTGGCATTTAGATACTTTTTACTGTTTGCCAAAACACTTGAATGTGCCTCAAGAAAAGGTACCTA  1964

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 1965  CTACATGCTGTATTGTATGACTGTCAGGATTTTAAGATTATACAAGTGAAGCATTAAAAGAGAAATTCTCAGAG  2038

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2039  ATATTTAGAATATTTGACAATGGTTTGAGAATGTAAAACAAAAAGGAACTAGTTAGAGTCAAGTTTTAAAATTT  2112

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2113  TTACTTTGTTGAATTTTTTTTTTTGGCATTTTGAGTGAAATATAACTATCATTAATTCTCTCTTCATCTTTGAG  2186

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2187  ATGCTTGGCCATAACAGGGTCCATACACATCTTCTGGTTTACTATATACAAAAACTGTAGTTGAAAAAAGATGA  2260

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2261  CAATTTAAAAGTCAGCCTAAAGAATGTAAAGGTATCTATATACAAAAGGCTACCTTTTCTAAAATCTGTGTGCA  2334

Query 1705  -----------------------------  1704
                                         
Sbjct 2335  CATAATTAAAGAGCTTAATTTTTTTTTAA  2363

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