Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11953
- Subject:
- NR_160431.1
- Aligned Length:
- 2915
- Identities:
- 1117
- Gaps:
- 1763
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCGGACCTCTCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGCTGGGCCGACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTGTGGTTGGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGGGTTGCAAGGA 296
Query 1 ------------ATGTTA-ATTGATGAAAGGTTACGATGTGAGCATCATA----------------AAG--CTA 43
.||.|| |..||.||.|..|...||| ||||.|||.|| ||| .||
Sbjct 297 GCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGAT-TGAGGATCTTATGACCTACTTTAGAGGAAGGTATA 369
Query 44 ATT-------ATCAGACACTG-----------AAGG-------------CT------GAACAC----ACAAGGT 76
||| .|.|||..||| |||| || |||.|| ||| ||
Sbjct 370 ATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTAAAACA--GT 441
Query 77 TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TGCAGAATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAA 515
Query 151 CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 CTTCAGCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCA 589
Query 225 GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 GATATTAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAAC 663
Query 299 GTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GTTTTAGGAATCTAGATGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTT 737
Query 373 CTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 CTCAAGTCAGAATTTGAACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATC 811
Query 447 AGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AGAGATTGCAAGACTGGAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACA 885
Query 521 GCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GCAAACGAGTGGAACAACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTA 959
Query 595 GCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTT 1033
Query 669 GGCTGAGATGCAGGCTACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTTGG 742
||||||||||||||||||||||||||||||||
Sbjct 1034 GGCTGAGATGCAGGCTACAGTCAGATCCCTGG------------------------------------------ 1065
Query 743 AAAAAGAGCTACAATCAAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATA 816
Sbjct 1066 -------------------------------------------------------------------------- 1065
Query 817 AATACATTGTCCAGTAAAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGAC 890
Sbjct 1066 -------------------------------------------------------------------------- 1065
Query 891 AGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACA 964
Sbjct 1066 -------------------------------------------------------------------------- 1065
Query 965 ATGAAATTCTCAAAGCAGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAA 1038
Sbjct 1066 -------------------------------------------------------------------------- 1065
Query 1039 GTACAAGCTGCCAAAGAAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAG 1112
Sbjct 1066 -------------------------------------------------------------------------- 1065
Query 1113 ATTAGCAGATTTGGAGAAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGA 1186
Sbjct 1066 -------------------------------------------------------------------------- 1065
Query 1187 AATTGCGGGCTTCACAGATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAA 1260
||||||||||||||||||
Sbjct 1066 --------------------------------------------------------AGGTTAAAACTTCAGCAA 1083
Query 1261 CAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 CAAATTGTGACTATTGAAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTT 1157
Query 1335 GCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGG 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GCAGATCCAAGTGACTTCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGG 1231
Query 1409 TGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TGGAGAGATTAAAACAAGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACA 1305
Query 1483 TTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TTGGAAGAGAAACAGATACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAA 1379
Query 1557 GTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAG---------CTTGA-------- 1613
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||.|
Sbjct 1380 GTACAATCAAGCTAAGGAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACA 1453
Query 1614 -------------ACAGGA-----------TCTT----------------GAGTTGG----------------- 1630
|||.|| |||| ||.||||
Sbjct 1454 AATTGAAAAGACTACAAGAGAAAGTAGAAGTCTTGGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGGTC 1527
Query 1631 ------------GATG-CCCTTCTG-TGACTGATAC-------------------------ATACAGAGA---- 1661
.||| .||||.|| .|||| |||| |||||||||
Sbjct 1528 TTAAATAGACAAAATGTTCCTTTTGAAGACT-ATACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAGAC 1600
Query 1662 -------------GAGTGTA-------TTCCCCCCA--CCCCCATTGAAGAGAG-ATCT--------------C 1698
.|||.|| ||||...|| ||.||| |.|| |||| |
Sbjct 1601 ATAATGAATTTCGAAGTCTAATTTTGGTTCCTAACATGCCTCCA------ACAGCATCTATCAATCCTGTTAGC 1668
Query 1699 TTGAAG-------------------------------------------------------------------- 1704
||..||
Sbjct 1669 TTTCAGTCATCAGCCATGGTTCCAAGCATGGAACTACCATTTCCTCCTCATATGCAGGAGGAACAACATCAAAG 1742
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 1743 GGAACTCTCTCTACTTCGCAAAAGACTAGAAGAACTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGGAT 1816
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 1817 CTTCCGGAGAATGATGTTCTTGGAGAACAGGCAGATCAAAAGAGGTGAAGTTGGTGACTCAGTAAAACTTGACA 1890
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 1891 TTTTAACCTGTGGCATTTAGATACTTTTTACTGTTTGCCAAAACACTTGAATGTGCCTCAAGAAAAGGTACCTA 1964
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 1965 CTACATGCTGTATTGTATGACTGTCAGGATTTTAAGATTATACAAGTGAAGCATTAAAAGAGAAATTCTCAGAG 2038
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2039 ATATTTAGAATATTTGACAATGGTTTGAGAATGTAAAACAAAAAGGAACTAGTTAGAGTCAAGTTTTAAAATTT 2112
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2113 TTACTTTGTTGAATTTTTTTTTTTGGCATTTTGAGTGAAATATAACTATCATTAATTCTCTCTTCATCTTTGAG 2186
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2187 ATGCTTGGCCATAACAGGGTCCATACACATCTTCTGGTTTACTATATACAAAAACTGTAGTTGAAAAAAGATGA 2260
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2261 CAATTTAAAAGTCAGCCTAAAGAATGTAAAGGTATCTATATACAAAAGGCTACCTTTTCTAAAATCTGTGTGCA 2334
Query 1705 ----------------------------- 1704
Sbjct 2335 CATAATTAAAGAGCTTAATTTTTTTTTAA 2363
