Construct: ORF ccsbBroadEn_11953
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006307.1_s300c1, BRDN0000394770
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CEP83 (51134)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001042399.1 | 79.6% | 74.8% | (many diffs) |
| 2 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001346457.2 | 79.6% | 74.8% | (many diffs) |
| 3 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001368037.1 | 79.6% | 74.8% | (many diffs) |
| 4 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001368038.1 | 79.6% | 74.8% | (many diffs) |
| 5 | human | 51134 | CEP83 | centrosomal protein 83 | NM_016122.3 | 79.6% | 74.8% | (many diffs) |
| 6 | human | 51134 | CEP83 | centrosomal protein 83 | XM_011538424.2 | 79.6% | 74.8% | (many diffs) |
| 7 | human | 51134 | CEP83 | centrosomal protein 83 | XM_017019385.2 | 79.6% | 74.8% | (many diffs) |
| 8 | human | 51134 | CEP83 | centrosomal protein 83 | XM_017019386.2 | 79.6% | 74.8% | (many diffs) |
| 9 | human | 51134 | CEP83 | centrosomal protein 83 | XM_024449002.1 | 79.6% | 74.8% | (many diffs) |
| 10 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001346458.1 | 72.9% | 68.1% | (many diffs) |
| 11 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001346459.1 | 72.9% | 68.1% | (many diffs) |
| 12 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001368039.1 | 72.9% | 68.1% | (many diffs) |
| 13 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001368040.1 | 72.9% | 68.1% | (many diffs) |
| 14 | human | 51134 | CEP83 | centrosomal protein 83 | XM_017019388.1 | 69.3% | 62.7% | (many diffs) |
| 15 | human | 51134 | CEP83 | centrosomal protein 83 | XM_024449003.1 | 69.3% | 62.7% | (many diffs) |
| 16 | human | 51134 | CEP83 | centrosomal protein 83 | XM_024449004.1 | 69.3% | 62.7% | (many diffs) |
| 17 | human | 51134 | CEP83 | centrosomal protein 83 | XM_017019389.2 | 69.2% | 64.4% | (many diffs) |
| 18 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001368041.1 | 68.9% | 64.4% | (many diffs) |
| 19 | human | 51134 | CEP83 | centrosomal protein 83 | XR_002957332.1 | 68.6% | (many diffs) | |
| 20 | human | 51134 | CEP83 | centrosomal protein 83 | XM_024449005.1 | 67.8% | 63% | (many diffs) |
| 21 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748739.2 | 64.6% | (many diffs) | |
| 22 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748737.2 | 62.8% | (many diffs) | |
| 23 | human | 51134 | CEP83 | centrosomal protein 83 | XR_002957333.1 | 54.5% | (many diffs) | |
| 24 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001346460.2 | 52.8% | 52.7% | (many diffs) |
| 25 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001346461.2 | 52.8% | 52.7% | (many diffs) |
| 26 | human | 51134 | CEP83 | centrosomal protein 83 | XM_024449006.1 | 49.9% | 45.7% | (many diffs) |
| 27 | human | 51134 | CEP83 | centrosomal protein 83 | XM_024449007.1 | 49.9% | 45.7% | (many diffs) |
| 28 | human | 51134 | CEP83 | centrosomal protein 83 | NR_160432.1 | 49.1% | (many diffs) | |
| 29 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001346462.2 | 43.4% | 43.3% | (many diffs) |
| 30 | human | 51134 | CEP83 | centrosomal protein 83 | NR_160431.1 | 38.3% | (many diffs) | |
| 31 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748736.2 | 31.4% | (many diffs) | |
| 32 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748735.2 | 31.1% | (many diffs) | |
| 33 | human | 51134 | CEP83 | centrosomal protein 83 | NM_001368042.1 | 30% | 29.4% | (many diffs) |
| 34 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748734.2 | 29.7% | (many diffs) | |
| 35 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748733.2 | 23.6% | (many diffs) | |
| 36 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748731.2 | 23.1% | (many diffs) | |
| 37 | human | 51134 | CEP83 | centrosomal protein 83 | XR_001748732.2 | 15.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1773
- ORF length:
- 1704
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTAATTGAT GAAAGGTTAC GATGTGAGCA TCATAAAGCT AATTATCAGA 121 CACTGAAGGC TGAACACACA AGGTTGCAGA ATGAACATGT AAAGTTACAA AATGAACTCA 181 AGCACCTGTT TAATGAAAAG CAAACTCAGC AGGAAAAACT TCAGCTCCTG CTTGAAGAAC 241 TAAGAGGAGA ATTAGTAGAG AAAACTAAAG ATTTAGAAGA AATGAAACTG CAGATATTAA 301 CTCCACAAAA ATTGGAATTG CTAAGAGCCC AAATACAACA AGAATTAGAA ACTCCAATGA 361 GAGAACGTTT TAGGAATCTA GATGAAGAGG TAGAAAAGTA TAGAGCTGTA TATAATAAGC 421 TTCGCTATGA ACATACATTT CTCAAGTCAG AATTTGAACA CCAGAAGGAA GAGTATGCAC 481 GTATTTTAGA TGAAGGAAAA ATAAAATATG AATCAGAGAT TGCAAGACTG GAGGAAGATA 541 AAGAAGAACT ACGTAACCAG CTGCTTAATG TTGATCTCAC AAAAGACAGC AAACGAGTGG 601 AACAACTTGC TCGAGAAAAA GTCTATTTGT GTCAAAAATT AAAAGGTTTA GAGGCTGAAG 661 TAGCGGAATT AAAGGCTGAA AAGGAGAATT CTGAGGCTCA GGTGGAAAAT GCCCAAAGAA 721 TACAGGTGCG GCAGTTGGCT GAGATGCAGG CTACAGTCAG ATCCCTGGAG GCTGAAAAAC 781 AATCAGCTAA TTTACGGGCA GAACGCTTGG AAAAAGAGCT ACAATCAAGC AGTGAACAAA 841 ATACCTTTTT AATTAATAAA TTGCATAAAG CTGAACGAGA AATAAATACA TTGTCCAGTA 901 AAGTAAAAGA ACTTAAACAT TCAAACAAAC TGGAAATAAC AGACATCAAA CTGGAGACAG 961 CAAGAGCTAA GAGTGAGCTA GAAAGAGAAA GGAATAAGAT TCAAAGTGAA CTGGATGGAT 1021 TACAGTCAGA CAATGAAATT CTCAAAGCAG CTGTTGAACA TCACAAAGTG CTCTTAGTAG 1081 AAAAGGATCG TGAATTAATA CGTAAAGTAC AAGCTGCCAA AGAAGAAGGT TATCAAAAAC 1141 TTGTGGTATT ACAAGATGAA AAGTTAGAAC TCGAGAACAG ATTAGCAGAT TTGGAGAAAA 1201 TGAAAGTGGA ACATGATGTC TGGAGGCAAT CTGAAAAGGA TCAGTATGAA GAGAAATTGC 1261 GGGCTTCACA GATGGCAGAA GAGATCACCA GGAAGGAGCT TCAGAGTGTT AGGTTAAAAC 1321 TTCAGCAACA AATTGTGACT ATTGAAAATG CAGAGAAGGA AAAAAATGAA AATTCTGACC 1381 TAAAACAGCA AATCAGTAGT TTGCAGATCC AAGTGACTTC ACTTGCACAG TCAGAGAATG 1441 ACTTGCTGAA TTCAAACCAA ATGCTGAAGG AAATGGTGGA GAGATTAAAA CAAGAATGCC 1501 GAAATTTTAG AAGCCAAGCT GAAAAAGCGC AACTAGAAGC TGAAAAGACA TTGGAAGAGA 1561 AACAGATACA GTGGTTGGAA GAAAAGCATA AGCTTCATGA GCGTATCACA GACAGAGAAG 1621 AAAAGTACAA TCAAGCTAAG GAGAAACTGC AGCGAGCTGC AATTGCCCAG AAAAAGCTTG 1681 AACAGGATCT TGAGTTGGGA TGCCCTTCTG TGACTGATAC ATACAGAGAG AGTGTATTCC 1741 CCCCACCCCC ATTGAAGAGA GATCTCTTGA AGTTGCCAAC TTTCTTGTAC AAAGTtggca 1801 ttataagaaa gcattgctta tcaatttgtt gcaacgaac