Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11953
Subject:
NR_160432.1
Aligned Length:
3399
Identities:
1672
Gaps:
1710

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCGGACCTCTCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGCTGGGCCGACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTGTGGTTGGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGGGTTGCAAGGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCGTGCGTGCGTCTGGTATAATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AAAGAAAACTAAAACAGTAAGAAAGCCAAAACTTATTTTTACATGGTTGTCAGCACATTTACCGATATGGACAC  444

Query    1  -------------------------------------------------------------------ATGTTAA  7
                                                                               |||||||
Sbjct  445  TTTTCCCAATAATTTTCCTCCTGGTGGAGACAGTGGATTGACAGGTTCTCAGTCGGAGTTCCAGAAAATGTTAA  518

Query    8  TTGATGAAAGGTTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAG  81
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTGATGAAAGGTTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAG  592

Query   82  AATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCA  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AATGAACATGTAAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCA  666

Query  156  GCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATAT  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTCCTGCTTGAAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATAT  740

Query  230  TAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTT  303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAACTCCACAAAAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTT  814

Query  304  AGGAATCTAGATGAA-----------------------------------------------------------  318
            |||||||||||||||                                                           
Sbjct  815  AGGAATCTAGATGAAAGTCTGGCTCTGTTGCCCAGCCTGGAGTGCAGTGGCGTGATCTCGGCTCACTTCAACCT  888

Query  319  --------------------------------------------------------------------------  318
                                                                                      
Sbjct  889  CCGCCTCTCGGGTTCAAGCGATTCTCTTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCACGCACCACCGTA  962

Query  319  --------------------------------------------------------------------------  318
                                                                                      
Sbjct  963  CCTGGCTAATTTTTGTATTTTTAGTAGAAACGGGGTTTCACCATATTGGCCAGCTGGTTTTGAACTCCTGATCT  1036

Query  319  --------------------------------------------------------------------------  318
                                                                                      
Sbjct 1037  CAAGTGATCTGCCCGCCTCGGCCTCCCAAAGTGTTGGGATTACAGGCCTGAGCCACCATGCCCAGCCTAATTGG  1110

Query  319  ------------------------------------------------------------GAGGTAGAAAAGTA  332
                                                                        ||||||||||||||
Sbjct 1111  CACATCTCTTTTGCCTTGAATACTCTCCCTCCAGATACGTCGTGGCAAACTTCATCTCTTGAGGTAGAAAAGTA  1184

Query  333  TAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGT  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTGAACACCAGAAGGAAGAGT  1258

Query  407  ATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTGGAGGAAGATAAAGAAGAA  1332

Query  481  CTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGT  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACAACTTGCTCGAGAAAAAGT  1406

Query  555  CTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGG  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTGAAAAGGAGAATTCTGAGG  1480

Query  629  CTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAG  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCTACAGTCAGATCCCTGGAG  1554

Query  703  GCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATAC  776
            |||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTTGGAAAAAGAGCTACAATCAAGCAGTGAACAAAATAC  1628

Query  777  CTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAAC  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTAAAGTAAAAGAACTTAAAC  1702

Query  851  ATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGG  924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGTGAGCTAGAAAGAGAAAGG  1776

Query  925  AATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGCAGCTGTTGAACATCACAA  998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  AATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGCAGCTGTTGAACATCACAA  1850

Query  999  AGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAAC  1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAGAAGAAGGTTATCAAAAAC  1924

Query 1073  TTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAGAAAATGAAAGTGGAACAT  1146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAGAAAATGAAAGTGGAACAT  1998

Query 1147  GATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACAGATGGCAGAAGAGATCAC  1220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACAGATGGCAGAAGAGATCAC  2072

Query 1221  CAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAA  1294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTGAAAATGCAGAGAAGGAAA  2146

Query 1295  AAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAG  1368
            |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AAAATGAAAATTCTGACCTAAAA--------CAGTAGTTTGCAGATCCAAGTGACTTCACTTGCACAGTCAGAG  2212

Query 1369  AATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAG  1442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213  AATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACAAGAATGCCGAAATTTTAG  2286

Query 1443  AAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAA  1516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287  AAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGATACAGTGGTTGGAAGAAA  2360

Query 1517  AGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCT  1590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361  AGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAGGAGAAACTGCAGCGAGCT  2434

Query 1591  GCAATTGCCCAGAAAAAG---------CTTGA---------------------ACAGGA-----------TCTT  1623
            ||||||||||||||||||         |||.|                     |||.||           ||||
Sbjct 2435  GCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACAAATTGAAAAGACTACAAGAGAAAGTAGAAGTCTT  2508

Query 1624  ----------------GAGTTGG-----------------------------GATG-CCCTTCTG-TGACTGAT  1650
                            ||.||||                             .||| .||||.|| .|||| ||
Sbjct 2509  GGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGGTCTTAAATAGACAAAATGTTCCTTTTGAAGACT-AT  2581

Query 1651  AC-------------------------ATACAGAGA-----------------GAGTGTA-------TTCCCCC  1675
            ||                         |||||||||                 .|||.||       ||||...
Sbjct 2582  ACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAGACATAATGAATTTCGAAGTCTAATTTTGGTTCCTAA  2655

Query 1676  CA--CCCCCATTGAAGAGAG-ATCT--------------CTTGAAG----------------------------  1704
            ||  ||.|||      |.|| ||||              |||..||                            
Sbjct 2656  CATGCCTCCA------ACAGCATCTATCAATCCTGTTAGCTTTCAGTCATCAGCCATGGTTCCAAGCATGGAAC  2723

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2724  TACCATTTCCTCCTCATATGCAGGAGGAACAACATCAAAGGGAACTCTCTCTACTTCGCAAAAGACTAGAAGAA  2797

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2798  CTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGGATCTTCCGGAGAATGATGTTCTTGGAGAACAGGCAG  2871

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2872  ATCAAAAGAGGTGAAGTTGGTGACTCAGTAAAACTTGACATTTTAACCTGTGGCATTTAGATACTTTTTACTGT  2945

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 2946  TTGCCAAAACACTTGAATGTGCCTCAAGAAAAGGTACCTACTACATGCTGTATTGTATGACTGTCAGGATTTTA  3019

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 3020  AGATTATACAAGTGAAGCATTAAAAGAGAAATTCTCAGAGATATTTAGAATATTTGACAATGGTTTGAGAATGT  3093

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 3094  AAAACAAAAAGGAACTAGTTAGAGTCAAGTTTTAAAATTTTTACTTTGTTGAATTTTTTTTTTTGGCATTTTGA  3167

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 3168  GTGAAATATAACTATCATTAATTCTCTCTTCATCTTTGAGATGCTTGGCCATAACAGGGTCCATACACATCTTC  3241

Query 1705  --------------------------------------------------------------------------  1704
                                                                                      
Sbjct 3242  TGGTTTACTATATACAAAAACTGTAGTTGAAAAAAGATGACAATTTAAAAGTCAGCCTAAAGAATGTAAAGGTA  3315

Query 1705  ---------------------------------------------------------------------  1704
                                                                                 
Sbjct 3316  TCTATATACAAAAGGCTACCTTTTCTAAAATCTGTGTGCACATAATTAAAGAGCTTAATTTTTTTTTAA  3384

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