Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11953
- Subject:
- XR_001748735.2
- Aligned Length:
- 5387
- Identities:
- 1680
- Gaps:
- 3690
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGACAGAGCCCGCTCCTCCAGGCTGGTGGGGCGGTGCGATGAGGCGGCTTCTGGGCCATACGTCAGCACGTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGCCGCACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACCTCTCCCGGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGGCCGACACCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTTGGAGCTGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTGCAAGGAGCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGATTGAGGATCTTATGACCTACTTTAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAAGGTATAATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAACAGTAAGAAAGCCAAAACTTATTTTTACATGGTTGTCAGCACATTTACCGATATGGACACTTTTCCCAATA 592
Query 1 --------------------------------------------------------ATGTTAATTGATGAAAGG 18
||||||||||||||||||
Sbjct 593 ATTTTCCTCCTGGTGGAGACAGTGGATTGACAGGTTCTCAGTCGGAGTTCCAGAAAATGTTAATTGATGAAAGG 666
Query 19 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 740
Query 93 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 814
Query 167 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 888
Query 241 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 962
Query 315 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 1036
Query 389 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 1110
Query 463 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 1184
Query 537 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 1258
Query 611 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 1332
Query 685 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTTGGAAAAAGAGCTACAATC 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1333 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTTGGAAAAAGAGCTACAATC 1406
Query 759 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 1480
Query 833 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 1554
Query 907 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 1628
Query 981 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1702
Query 1055 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1776
Query 1129 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1850
Query 1203 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTG 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTG 1924
Query 1277 AAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACT 1998
Query 1351 TCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACA 2072
Query 1425 AGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGA 2146
Query 1499 TACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAG 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAG 2220
Query 1573 GAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAG---------CTTGA---------------------ACA 1616
|||||||||||||||||||||||||||||||||||| |||.| |||
Sbjct 2221 GAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGAGAAAATCTCTTCATGAAAACAAATTGAAAAGACTACA 2294
Query 1617 GGA-----------TCTT----------------GAGTTGG-----------------------------GATG 1634
.|| |||| ||.|||| .|||
Sbjct 2295 AGAGAAAGTAGAAGTCTTGGAGGCAAAGAAAGAAGAATTGGAAACAGAAAATCAGGTCTTAAATAGACAAAATG 2368
Query 1635 -CCCTTCTG-TGACTGATAC-------------------------ATACAGAGA-----------------GAG 1664
.||||.|| .|||| |||| ||||||||| .||
Sbjct 2369 TTCCTTTTGAAGACT-ATACAAGGCTTCAAAAAAGACTAAAAGATATACAGAGAAGACATAATGAATTTCGAAG 2441
Query 1665 TGTA-------TTCCCCCCA--CCCCCATTGAAGAGAG-ATCT--------------CTTGAAG---------- 1704
|.|| ||||...|| ||.||| |.|| |||| |||..||
Sbjct 2442 TCTAATTTTGGTTCCTAACATGCCTCCA------ACAGCATCTATCAATCCTGTTAGCTTTCAGTCATCAGCCA 2509
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2510 TGGTTCCAAGCATGGAACTACCATTTCCTCCTCATATGCAGGAGGAACAACATCAAAGGGAACTCTCTCTACTT 2583
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2584 CGCAAAAGACTAGAAGAACTGGAAACAACACAAAGAAAACAACTAGAGGAACTTGGATCTTCCGGAGAATGATG 2657
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2658 TTCTTGGAGAACAGGCAGATCAAAAGAGGTTTCTCTGGCACTCAGATCTCTGAGAAGTCACGTGCACCCCTCAC 2731
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2732 CGCCCTCGGCACTCACCCAGTATGTGGGTTAAGAGGCCAAAGGAAGTATCGCTCAATATTGCAAACAAACAGGA 2805
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2806 AATTTAGAACTTCTTCAGGAAGCAAGGACCTACACAAAAGGGCTCTGATGTTTCAAACCACTTCTTCCCTGATA 2879
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2880 AGCCTGGAAGTAAAGCCACTGAAGACAAAATAATGCATTCTATGAGGGACGACTAAGCTCTTCAACAAAAATTC 2953
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2954 CAGAAGCAAATTTGTATATGCTCACACTTGTGTGCCCATGTTCACAAAGAGAGGCATGATATGAACCATCTCTG 3027
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3028 TAGGCTCCTGTTCGGGGTGGAGGGGGAGGCATCAGTGTGCGAAGGTCCCAGCACCACAGTGGGCAGACTCTCTG 3101
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3102 GCCAAGGCTGCTAACCTATGCCTAGGTGATTCCGTGCAGTCTCAGGGCCTGCAATCTCATCAATCTGATTTACA 3175
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3176 GACGTAATATTTAAAGACAACAACAACAAACGCCATCTTTGAAGGACCGTGCTTCCTTCGAAGAATCAGGATGC 3249
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3250 CCATGAGAGACCAAAGCAGTCTCTTGGCCCCTAGACATGCCCTCCAGGAACAACCTGGCTGTGAGCGGAGAGTC 3323
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3324 TAACAGGCAAGAAGGAAGGGAGAAGACAGAAGGAAGATGCTCGCCCATACAGAGACAGAGGGAGGGGGGGCTCC 3397
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3398 AAAGCCGAAAGAGGAGGTCCCCAAGTACTGTGGACACTAGCCAGGTATATATGCAGAGGCTGCAGGAGGCAATG 3471
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3472 TCTGATTTGCCTAGGGCTCAGGGGAGAGATGAAAACACAAATCATATGGAAGATGGGAACCCTCAGGCCTACCT 3545
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3546 CAACTTAAAAATGGGTGTAATAACAGTACCGGCCTTCTAGCATTGTTAGGGAGATTAAATGTGATCATGCATTC 3619
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3620 AAGGGCTTAGCACGGGGCCAGGCTGCTGGGAAAGGCTTGATGATAGTATCGGCAATAAAACCTGTACAATTACT 3693
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3694 ATTGTTGGCATTAGTATCCACTCATTTGCAAACAGATTCAGCCCACATTGGACAGCTAGGACGCCCACTCCATG 3767
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3768 CTCAGTATCTCTGAATAAGGAGGAGGCTGCCAGCAATGAACCCAGTGGAAGCCAGTAGACTCCTGGCTTTCATC 3841
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3842 CCAGTCCACCGCAAGCCAGCTGGGTGACCTCTGAACCCATCCCTAACCAGCTGTGTAACCTCTGTGTATGTCGC 3915
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3916 TTTCTCATCTGCAAAGAGGGCATAACAACAGTAACCGCACAGTTCTTAGAACAGCATCTGGCATGTGAGCCCGT 3989
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 3990 GACTTATGGACCACTGACGTGGATGTGGGGCTTCTGAAATTTCGGGAGGTTCTCAGGGGTGTTTCTTGTCTTTA 4063
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4064 ATGCTGCTATGATCTGAATATTGATGTCCCCCTAACTCCAGGTATTGAAATCCTAACCCCCAAGGTGATGGTAC 4137
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4138 TTGGAGGTGGGGCCTTTGGAGGGGATTAGATCATGAGGGCAGAGTCCTCATAAATGGGATTAGTGCCCTTATAA 4211
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4212 AAGAGGCCTCAGAGAGCTGCCCTGCCCTTTCCACCATGTGAGGACCCAGCAGGAAGGCGCCATCATGAGAAAGG 4285
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4286 GGGCTCTCACAGGACACCAACTCTTGATCTTGGACTTCTCATCCTCCAGAACTGTGAGAAATAAGTTTCTATTA 4359
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4360 TTTATAAGCCACCCAGTTTATGGTGTTTATAAAGAGCTGAGACAAACACCACTAAATCTTGCCCTTATAATCCT 4433
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4434 GTTGATAATTACGCAAGAGTAAATTTTGTTCTGGTCTCAACCAAATGATTAAAACTCCGAATCAGTGGAATCTG 4507
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4508 AACTCTGAGGTAAGCCGGTGATCTCCGTCTGGCCTGTACGAGTTTCCCTCCTACAACAGAGTCACTCCCTTGCC 4581
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4582 TGCTCTCAGAGAACCTTTATGTTCTGGGCCAGCCACCGACTAGGAAGGGGTTCAAAGGCCTGTCTGCTCACAAA 4655
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4656 CAAGAAACAAAAAATACCAGACAGGAGAGAAGGCAGGGAGCTGGTGGGCAGAGTGCCTAGAAGGAACCAACATG 4729
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4730 TGAAGCCTCACACCCGAGCCCTCTCCTCACCTCCCTTTTCTAGAAATGTTTCCTGGATTATTATTCCCATCCCT 4803
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4804 GTTGTAGAGTGAGGGAACTGAGGCACAGAGGGGCTGAGTAACTTGCTCCAGGAACAGCTCACCAGTGGCAGAAC 4877
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4878 CAGGAATTGAAGCCAGATTTGCCTAACTGCACAATTGGTGCCACAAACCCCTCGGCTATGCCATCCCCGCTTTA 4951
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 4952 CCACCCGCCCTCCCTCCCTCCTTCTGGTTCCACCTATAGCCCAGGAGCCCTCCTGACCCTCCAGAAACCCTGGC 5025
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 5026 TTAGCTCAGGCTGTAAGCAATGTCCTAAGCTAAATTCCCCACACCAGTGGGAGGGGTGGGTGTGAAGGGGTCAA 5099
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 5100 TGCTGGTGCCACCACCTACGATCTTGTTGGGGTCTTGCCTTATTTCTCTGCAAGGTGATCTTCTCATGGTGGCG 5173
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 5174 GGTAATTGCAGTTAAGCTACTTCAGTTTCTAAAGGGAAAGATGAATGGGAGGCACCTTTTAATCGGAGCTTCAG 5247
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 5248 CAATCTCAGCTTGTTTAATAGTTTTATAAATATTTGTGAAACAGCATTCTATTACTACCTAAAGGCACTATTGT 5321
Query 1705 ----------------------------------------------------------- 1704
Sbjct 5322 CTTTAACAAAAACACTTTTTTATGGGCAATAAATGTTCTTTTTAAAAACATAACCAAAA 5380
