Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11953
- Subject:
- XR_001748737.2
- Aligned Length:
- 2637
- Identities:
- 1657
- Gaps:
- 968
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGACAGAGCCCGCTCCTCCAGGCTGGTGGGGCGGTGCGATGAGGCGGCTTCTGGGCCATACGTCAGCACGTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCGCCGCACCCCTGAGGATCCCGGTCCACGCGGAGGAGTGGGGCTTTTCACCGCCGCCGCCGCCGCCCTCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACCTCTCCCGGGATACTTCACATTTCCCTAGGGACGGGAGCCCGAGGGGTCCGTTCGGCCCTCTTCCTCTCGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGGCCGACACCCCGCTGTAGGACCGTAACCCTTAGTCCCAATGCCTCCGTAAGCGGAGTTGAGTGGGTGCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTTGGAGCTGTGGAGGTGTCCCCGGTGGCGAGCGCGGCCAGAACTGCGGTCACTTAAGTTTTCCGTGTGCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTGCAAGGAGCGTGCGTGCGTCTGGTATAGGGAGGACACCTCTGGATTGAGGATCTTATGACCTACTTTAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAAGGTATAATTTGGCTTCCTGAGATTCTGCCTTAGCAAGAAAGGAGTGGGAAATACCCTTGGAAAGAAAACTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAACAGTAAGAAAGCCAAAACTTATTTTTACATGGTTGTCAGCACATTTACCGATATGGACACTTTTCCCAATA 592
Query 1 --------------------------------------------------------ATGTTAATTGATGAAAGG 18
||||||||||||||||||
Sbjct 593 ATTTTCCTCCTGGTGGAGACAGTGGATTGACAGGTTCTCAGTCGGAGTTCCAGAAAATGTTAATTGATGAAAGG 666
Query 19 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTACGATGTGAGCATCATAAAGCTAATTATCAGACACTGAAGGCTGAACACACAAGGTTGCAGAATGAACATGT 740
Query 93 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGTTACAAAATGAACTCAAGCACCTGTTTAATGAAAAGCAAACTCAGCAGGAAAAACTTCAGCTCCTGCTTG 814
Query 167 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAACTAAGAGGAGAATTAGTAGAGAAAACTAAAGATTTAGAAGAAATGAAACTGCAGATATTAACTCCACAA 888
Query 241 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAATTGGAATTGCTAAGAGCCCAAATACAACAAGAATTAGAAACTCCAATGAGAGAACGTTTTAGGAATCTAGA 962
Query 315 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAAGAGGTAGAAAAGTATAGAGCTGTATATAATAAGCTTCGCTATGAACATACATTTCTCAAGTCAGAATTTG 1036
Query 389 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AACACCAGAAGGAAGAGTATGCACGTATTTTAGATGAAGGAAAAATAAAATATGAATCAGAGATTGCAAGACTG 1110
Query 463 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAGGAAGATAAAGAAGAACTACGTAACCAGCTGCTTAATGTTGATCTCACAAAAGACAGCAAACGAGTGGAACA 1184
Query 537 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACTTGCTCGAGAAAAAGTCTATTTGTGTCAAAAATTAAAAGGTTTAGAGGCTGAAGTAGCGGAATTAAAGGCTG 1258
Query 611 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAAGGAGAATTCTGAGGCTCAGGTGGAAAATGCCCAAAGAATACAGGTGCGGCAGTTGGCTGAGATGCAGGCT 1332
Query 685 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGCTTGGAAAAAGAGCTACAATC 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1333 ACAGTCAGATCCCTGGAGGCTGAAAAACAATCAGCTAATTTACGGGCAGAACGTTTGGAAAAAGAGCTACAATC 1406
Query 759 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AAGCAGTGAACAAAATACCTTTTTAATTAATAAATTGCATAAAGCTGAACGAGAAATAAATACATTGTCCAGTA 1480
Query 833 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTAAAAGAACTTAAACATTCAAACAAACTGGAAATAACAGACATCAAACTGGAGACAGCAAGAGCTAAGAGT 1554
Query 907 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGCTAGAAAGAGAAAGGAATAAGATTCAAAGTGAACTGGATGGATTACAGTCAGACAATGAAATTCTCAAAGC 1628
Query 981 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGCTGTTGAACATCACAAAGTGCTCTTAGTAGAAAAGGATCGTGAATTAATACGTAAAGTACAAGCTGCCAAAG 1702
Query 1055 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AAGAAGGTTATCAAAAACTTGTGGTATTACAAGATGAAAAGTTAGAACTCGAGAACAGATTAGCAGATTTGGAG 1776
Query 1129 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AAAATGAAAGTGGAACATGATGTCTGGAGGCAATCTGAAAAGGATCAGTATGAAGAGAAATTGCGGGCTTCACA 1850
Query 1203 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTG 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GATGGCAGAAGAGATCACCAGGAAGGAGCTTCAGAGTGTTAGGTTAAAACTTCAGCAACAAATTGTGACTATTG 1924
Query 1277 AAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AAAATGCAGAGAAGGAAAAAAATGAAAATTCTGACCTAAAACAGCAAATCAGTAGTTTGCAGATCCAAGTGACT 1998
Query 1351 TCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TCACTTGCACAGTCAGAGAATGACTTGCTGAATTCAAACCAAATGCTGAAGGAAATGGTGGAGAGATTAAAACA 2072
Query 1425 AGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGAATGCCGAAATTTTAGAAGCCAAGCTGAAAAAGCGCAACTAGAAGCTGAAAAGACATTGGAAGAGAAACAGA 2146
Query 1499 TACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAG 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TACAGTGGTTGGAAGAAAAGCATAAGCTTCATGAGCGTATCACAGACAGAGAAGAAAAGTACAATCAAGCTAAG 2220
Query 1573 GAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAGCTTGAACAGGATCTTGAGTTGGGATGCCCTTCTGTGAC 1646
|||||||||||||||||||||||||||||||||||| |.|..|||| |||| .|||
Sbjct 2221 GAGAAACTGCAGCGAGCTGCAATTGCCCAGAAAAAG-----AGAAAATCT--------------CTTC-ATGA- 2273
Query 1647 TGATACA------------TAC-AGAGAGAGT-GTATTCCCCCCACCCCCATTG------AAGAGAG------- 1693
|.||| ||| |||||.||| |.|.|| ||| ||||.||
Sbjct 2274 --AAACAAATTGAAAAGACTACAAGAGAAAGTAGAAGTC------------TTGGAGGCAAAGAAAGAAGAATT 2333
Query 1694 -----------ATC---TCTTGAAG------------------------------------------------- 1704
||| ||||.||.
Sbjct 2334 GGAAACAGAAAATCAGGTCTTAAATAGGTCTCTGTCACATACCAGGTGTTTGCCTTATGATTGGGACTAACAGA 2407
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2408 AAATGTCACTGGCTTTGGTAGCAAGGAGTGGTGTTAGTTGTTGCTGCTGTACAAGACAGTTGTAGCTATTGCAT 2481
Query 1705 -------------------------------------------------------------------------- 1704
Sbjct 2482 AGTTCTGAAAATTGTGCCTACAACTTTGAATCAAAGACAAAATGTTCCTTTTGAAGACTATACAAGGCTTCAAA 2555
Query 1705 ----------------------------------------------- 1704
Sbjct 2556 AAAGACTAAAAGATATACAGAGAAGACATAATGAATTTCGAAGTCTA 2602
